Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C20orf117 Gene 0 45.85 107.30 109.46 91.51 81.54 247.31 97.79 153.03 185.57 195.10 111.62 39.78 53.44 110.01 68.37 102.11 118.91 389.09 192.96 183.70 138.20 93.54 121.60 2 237536 Transcript 0 39.21 90.35 87.15 76.98 70.31 219.44 85.40 134.29 164.35 170.64 103.61 38.56 48.97 95.46 54.32 90.44 103.46 342.18 175.01 155.66 119.99 86.98 107.63 3 456801 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 357779 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 489902 Transcript 0 0.00 2.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.76 0.00 0.00 0.00 7.00 6 279034 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 463491 Transcript 0 5.66 20.86 25.21 24.70 12.07 14.42 11.88 20.34 15.83 15.95 8.37 3.50 3.11 3.84 11.24 13.08 10.15 33.32 8.25 17.85 8.54 3.02 8.53 8 465671 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 ER1a ExonRegion 0 0.00 0.00 0.69 0.00 0.00 0.63 0.59 1.41 5.75 4.26 17.82 0.00 0.00 4.50 2.44 8.03 13.26 24.46 14.98 6.71 12.83 1.14 7.10 10 E1_Ab KnownBoundary 0 0.00 0.00 7.84 0.00 0.00 8.01 0.00 4.60 22.97 14.75 32.75 0.00 0.00 9.48 0.00 19.65 26.65 84.77 47.62 5.62 25.45 4.96 19.38 11 ER1b ExonRegion 0 0.61 1.82 4.93 1.15 0.99 11.00 4.01 7.13 12.68 15.60 26.38 3.69 3.24 23.62 8.50 15.55 24.84 80.53 32.29 31.92 36.52 4.76 19.52 12 E1a_E3a KnownJunction 0 0.00 9.01 30.22 3.43 4.16 50.65 19.03 21.73 57.81 48.62 71.33 11.85 13.47 90.88 26.82 64.34 80.22 246.65 89.13 99.20 76.97 28.96 39.95 13 I1 Intron 0 4.82 6.56 8.96 9.83 5.71 9.70 11.42 12.77 8.56 12.28 14.40 5.26 4.09 8.84 12.91 16.64 12.21 40.15 14.96 51.52 13.58 2.08 22.43 14 I1_SR1 SilentIntronRegion 0 3.72 5.37 9.34 9.69 4.44 9.26 8.82 13.45 9.34 12.55 13.98 4.17 3.43 8.12 12.30 14.47 12.61 44.25 14.01 49.99 12.50 2.06 20.68 15 I1_AR1 ActiveIntronRegion 0 8.20 6.10 6.13 1.36 5.02 10.54 12.41 8.86 8.34 13.48 10.39 2.16 0.00 9.54 19.22 11.89 6.60 19.63 25.48 51.60 24.24 4.17 17.25 16 I1_AR2 ActiveIntronRegion 0 7.02 8.09 9.11 11.86 6.54 7.81 15.47 11.80 8.75 13.92 18.84 4.41 4.67 11.61 14.53 21.80 12.22 40.03 13.34 57.53 17.87 2.43 31.09 17 I1_SR2 SilentIntronRegion 0 6.19 5.10 9.92 10.19 6.71 9.97 9.41 15.07 5.39 8.56 12.12 15.54 1.61 7.31 13.98 18.64 12.42 36.49 14.65 53.37 14.72 2.61 23.32 18 I1_SR3 SilentIntronRegion 0 8.44 14.95 4.57 6.99 14.63 19.29 26.69 10.93 4.31 8.88 15.19 12.59 12.49 9.51 19.56 19.45 9.26 16.15 43.64 58.61 14.42 0.00 22.54 19 I1_AR4 ActiveIntronRegion 0 5.87 12.16 8.66 8.29 12.09 18.82 20.61 11.45 7.22 12.00 7.29 7.48 8.14 9.58 10.60 22.21 13.41 25.73 16.68 52.69 9.26 1.93 12.84 20 E2_Aa NovelBoundary 0 0.00 6.12 26.05 26.50 44.48 25.38 36.70 30.48 6.08 10.48 19.95 5.55 13.64 11.83 13.35 32.73 4.77 49.70 21.65 97.28 5.75 9.37 20.23 21 ER2a ExonRegion 0 5.79 15.90 16.17 14.51 11.37 13.69 21.62 19.26 7.50 12.75 15.79 9.01 12.32 14.09 20.36 23.72 18.56 37.17 19.05 58.65 12.05 1.06 23.96 22 E2_Da NovelBoundary 0 13.34 15.00 13.57 26.84 13.84 20.56 27.12 26.21 16.41 10.21 10.37 6.00 26.30 3.00 5.19 32.81 8.60 57.79 17.13 64.43 4.94 2.94 53.86 23 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 I2 Intron 0 7.37 13.92 14.57 16.26 7.62 14.23 14.52 22.95 15.03 16.27 12.36 7.80 10.47 8.86 19.62 18.21 14.45 42.12 19.85 47.07 15.34 3.59 26.50 25 I2_SR1 SilentIntronRegion 0 6.70 7.19 9.54 13.88 9.25 11.70 14.24 15.28 11.95 9.67 13.06 8.07 8.05 9.13 17.15 18.62 15.08 34.82 18.04 50.18 13.98 2.19 25.86 26 I2_AR2 ActiveIntronRegion 1 17.59 18.25 37.84 22.79 10.96 25.51 23.72 55.98 31.72 31.26 32.98 31.69 42.00 18.52 45.40 39.20 35.15 89.12 43.54 133.35 36.32 6.91 42.21 27 I2_SR2 SilentIntronRegion 0 6.94 14.43 13.98 16.20 7.28 13.96 14.10 22.17 14.55 16.26 11.28 6.60 9.20 8.36 18.63 17.14 13.37 40.62 18.89 42.53 14.46 3.58 25.80 28 E3_Aa NovelBoundary 0 6.67 11.91 12.33 21.94 3.31 10.39 6.05 13.43 30.24 16.92 10.11 12.45 13.64 19.01 4.45 15.12 4.77 29.31 12.33 27.55 36.20 3.12 51.90 29 ER3a ExonRegion 0 12.91 15.96 31.25 10.90 2.41 34.84 14.30 25.37 64.07 66.61 77.07 12.56 18.88 78.00 49.47 61.82 70.64 276.24 127.65 124.31 100.27 26.67 57.48 30 E3_Ab KnownBoundary 0 31.26 24.54 45.44 20.81 7.64 51.67 14.00 32.00 77.17 87.36 77.44 12.60 28.89 82.82 60.20 71.69 70.13 306.42 149.46 160.11 121.52 31.41 77.94 31 ER3b ExonRegion 0 6.58 16.66 35.83 23.18 10.18 42.24 27.75 35.80 65.50 68.19 63.79 11.94 16.91 74.60 51.94 38.96 83.74 217.03 107.48 137.32 100.38 32.22 56.61 32 E3a_E4a KnownJunction 0 13.71 32.10 47.54 44.15 15.70 84.21 35.46 69.05 104.69 119.19 106.71 19.36 53.41 129.20 105.69 67.16 102.57 369.72 200.38 188.56 123.99 49.05 61.29 33 ER4a ExonRegion 0 9.80 27.43 64.72 42.67 28.71 78.66 38.60 80.77 117.68 108.42 86.66 25.27 38.05 109.13 60.94 75.20 97.95 334.44 186.49 177.21 124.72 42.69 85.62 34 E4_Da KnownBoundary 0 0.00 20.92 20.87 22.97 20.12 13.00 10.64 5.63 7.12 8.25 2.37 6.30 0.00 7.77 9.64 4.36 4.49 44.69 8.09 5.82 5.68 0.00 0.00 35 E4a_E5a KnownJunction 0 13.63 38.35 60.79 30.53 7.56 78.99 47.43 87.98 124.56 112.55 89.13 18.76 48.37 135.91 74.29 59.22 99.39 329.43 233.23 206.52 116.82 38.94 100.22 36 ER4b ExonRegion 0 5.66 20.86 25.21 24.70 12.07 14.42 11.88 20.34 15.83 15.95 8.37 3.50 3.11 3.84 11.24 13.08 10.15 33.32 8.25 17.85 8.54 3.02 8.53 37 E4_Db NovelBoundary 0 6.37 21.51 30.42 42.79 0.00 2.38 16.74 32.04 26.59 24.69 10.21 0.00 0.00 2.24 16.19 23.07 18.05 30.05 8.47 15.40 20.14 2.76 0.00 38 I4_AR1 ActiveIntronRegion 0 7.04 10.77 19.60 20.47 10.44 12.92 14.98 15.55 12.60 9.92 5.83 0.44 3.05 4.70 13.55 10.11 8.22 30.45 11.77 12.61 6.23 3.02 6.80 39 ER5a ExonRegion 0 11.86 32.21 62.30 39.29 21.49 79.90 49.18 77.23 132.12 124.32 105.45 36.42 36.85 137.04 65.12 68.93 125.01 406.53 213.57 216.95 167.03 53.77 99.52 40 E5a_E6a KnownJunction 0 3.41 24.93 69.39 42.92 12.56 84.84 39.35 76.97 142.62 140.65 113.92 50.27 26.30 106.36 56.00 78.87 126.60 408.94 197.37 223.07 151.48 44.52 102.69 41 E6_Ab NovelBoundary 0 14.15 33.09 60.67 47.28 8.40 69.39 41.47 91.88 125.81 121.20 112.87 31.06 47.40 79.93 72.81 104.16 95.37 371.38 184.19 189.96 127.94 45.68 115.92 42 ER6a ExonRegion 0 8.70 28.09 61.18 43.51 11.10 74.51 33.64 80.41 123.33 129.30 118.48 39.45 41.86 87.10 59.53 84.54 111.37 424.98 184.52 195.59 144.79 49.93 107.35 43 ER6b ExonRegion 1 9.46 22.45 49.81 31.73 13.11 61.29 37.03 58.09 100.58 106.72 75.61 13.00 12.62 89.26 60.49 70.92 92.69 321.44 115.36 167.01 116.12 38.16 74.09 44 E6a_E7a KnownJunction 1 6.52 30.59 46.48 27.37 23.85 80.81 46.68 61.94 74.77 104.55 95.23 18.61 12.50 86.23 41.78 82.71 102.95 338.30 91.58 178.07 164.57 62.15 108.58 45 ER7a ExonRegion 0 10.76 33.17 38.65 23.69 26.97 90.04 53.61 69.40 122.35 121.06 88.60 28.71 20.62 112.09 62.04 70.07 121.74 337.76 155.56 169.23 148.24 55.68 84.29 46 E7a_E8a KnownJunction 1 13.93 51.90 42.67 28.13 61.21 97.33 58.60 62.76 127.37 104.47 106.97 18.16 13.64 128.32 67.62 44.52 106.22 270.52 156.05 159.79 163.34 62.52 74.61 47 ER8a ExonRegion 0 11.81 60.09 48.48 29.16 25.82 84.30 48.78 59.19 113.91 106.87 86.41 16.25 27.84 102.16 62.79 75.18 118.70 268.04 149.00 160.11 121.08 57.76 78.87 48 E8a_E9a KnownJunction 1 28.52 55.65 50.65 43.12 47.88 139.12 109.57 89.54 119.12 144.38 144.40 24.46 19.48 149.10 114.96 81.94 135.86 300.83 192.01 232.15 172.11 76.30 158.78 49 ER9a ExonRegion 0 11.45 32.59 62.11 41.87 23.41 118.28 60.13 85.47 139.38 126.61 123.09 32.48 74.98 135.23 82.16 103.19 145.47 376.49 202.18 198.07 136.75 65.86 131.16 50 E9a_E10a KnownJunction 0 25.49 20.65 66.47 44.58 23.43 115.67 47.30 82.15 141.64 134.20 134.40 70.82 75.00 129.32 44.87 157.91 160.26 397.08 210.17 257.91 158.83 69.13 166.63 51 ER10a ExonRegion 0 20.60 50.76 85.65 53.44 31.29 133.08 62.54 120.88 164.86 175.66 147.66 36.49 75.26 157.14 94.58 160.52 196.83 596.81 303.94 271.89 173.06 82.29 178.58 52 E10a_E11a KnownJunction 0 27.41 68.61 82.85 37.02 52.38 162.18 91.68 122.69 133.85 174.55 132.72 36.46 101.62 145.98 100.13 147.31 196.07 573.26 268.53 255.73 203.06 32.09 148.19 53 ER11a ExonRegion 0 21.35 40.57 55.62 36.36 23.80 106.69 59.72 79.81 109.88 126.97 87.91 34.46 61.89 114.97 64.74 98.49 139.21 426.67 145.33 207.32 143.67 53.69 97.03 54 E11a_E12a KnownJunction 0 21.71 21.44 39.77 37.22 11.88 155.08 75.25 45.47 72.19 91.87 70.39 25.36 14.61 131.73 49.20 102.37 111.55 392.11 150.69 231.51 149.32 32.33 91.51 55 ER12a ExonRegion 0 14.87 30.63 47.88 33.84 18.08 81.88 48.90 51.36 98.27 113.28 65.47 12.49 16.40 91.50 65.31 67.44 103.47 285.04 116.39 187.79 101.81 43.66 80.62 56 E12a_E13a KnownJunction 0 16.52 24.01 88.52 59.13 11.80 82.11 28.57 69.58 140.65 152.87 71.49 6.30 12.34 93.65 75.90 66.48 145.77 359.53 117.09 212.14 101.25 52.48 87.24 57 ER13a ExonRegion 1 17.73 42.99 60.13 51.18 21.59 100.20 50.79 81.07 159.86 155.45 114.28 15.09 26.45 117.93 87.16 97.25 89.54 442.92 170.55 206.12 123.41 54.98 100.82 58 E13a_E14a KnownJunction 0 17.78 58.41 52.04 53.01 49.24 115.39 87.88 106.14 171.44 194.35 150.14 25.21 46.10 138.03 105.94 104.59 134.17 505.03 213.65 238.41 139.49 102.50 156.47 59 ER14a ExonRegion 0 21.08 36.55 63.44 39.79 32.34 161.43 86.41 86.35 155.28 157.32 142.79 29.94 42.61 147.09 76.58 95.69 152.59 385.24 182.69 205.24 133.40 81.90 138.73 60 E14a_E15a KnownJunction 1 9.48 45.98 54.70 38.22 65.96 187.34 102.19 78.57 150.40 160.88 175.68 13.80 57.79 103.18 76.64 107.15 193.55 324.50 143.53 190.86 145.55 84.50 99.36 61 I14_AR1 ActiveIntronRegion 0 2.72 7.54 15.96 9.96 6.61 7.13 10.57 8.81 9.91 10.47 5.08 1.00 1.13 3.50 4.63 14.67 4.34 39.31 17.77 10.32 30.40 5.44 19.05 62 E15_Aa NovelBoundary 0 22.74 29.86 24.33 21.94 15.20 22.03 19.03 24.89 11.55 18.91 7.05 12.60 0.00 7.42 13.35 0.00 16.83 30.80 4.24 28.32 57.45 18.98 21.34 63 ER15a ExonRegion 0 19.40 40.13 55.54 50.00 35.74 113.90 57.53 88.51 155.45 142.76 122.46 37.37 57.61 136.07 79.15 101.26 137.24 469.13 169.79 183.60 143.61 68.66 114.01 64 E15_Da KnownBoundary 0 3.41 18.29 20.34 26.07 3.31 52.70 16.08 39.39 49.65 46.15 24.48 6.30 6.66 36.08 19.66 26.57 59.37 186.33 62.40 50.62 44.54 14.08 43.02 65 E15a_E16c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 66 E15_Db KnownBoundary 0 3.78 17.89 22.32 22.24 15.11 64.96 21.90 52.86 52.52 55.09 48.54 11.85 6.82 25.02 18.67 26.40 35.06 268.08 38.02 87.06 61.28 21.31 30.56 67 E15b_E16d KnownJunction 0 0.00 2.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.76 0.00 0.00 0.00 7.00 68 ER15b ExonRegion 0 6.77 31.32 36.03 44.70 20.34 100.49 35.22 64.30 110.42 113.77 69.20 34.64 15.95 103.94 62.09 60.04 118.17 379.16 72.63 139.15 125.17 42.92 78.11 69 ER15c ExonRegion 0 10.86 26.40 55.84 43.57 19.74 104.33 45.19 78.35 136.10 128.87 99.39 30.08 36.31 111.88 58.14 90.79 113.21 414.03 156.76 173.57 139.77 52.40 98.00 70 E15c_E16a KnownJunction 1 10.89 27.56 52.48 36.79 30.48 77.80 49.33 122.89 203.15 180.19 161.51 13.05 26.30 119.08 76.64 118.26 171.39 484.55 267.87 232.91 179.77 72.50 112.59 71 E16_Aa NovelBoundary 0 14.37 23.94 20.34 35.79 11.63 5.34 15.06 35.90 38.80 21.27 14.32 0.00 0.00 11.89 13.47 19.82 25.81 56.71 17.41 10.93 21.87 11.63 19.29 72 ER16a ExonRegion 1 15.00 37.89 34.78 34.31 27.23 105.68 54.60 69.09 129.90 140.12 101.79 19.41 18.33 88.71 64.70 87.18 131.28 346.12 147.15 161.94 141.12 61.38 106.83 73 E16_Da KnownBoundary 1 53.49 60.71 41.04 30.47 52.04 231.40 102.24 81.12 137.79 122.33 135.67 6.30 38.96 64.75 73.68 118.09 169.61 431.24 308.43 159.22 113.05 74.89 110.20 74 ER16b ExonRegion 1 11.46 46.83 25.59 26.15 33.89 124.80 67.70 45.06 88.19 115.96 91.70 22.05 16.32 83.72 64.99 82.66 92.82 283.67 135.23 159.23 123.91 55.67 90.06 75 E16_Db KnownBoundary 0 9.33 31.84 36.31 45.12 27.84 115.62 59.35 68.27 110.10 133.72 72.18 13.05 25.16 89.88 47.72 64.17 98.46 375.36 148.62 200.12 123.37 42.19 105.25 76 E16b_E16b KnownJunction 0 0.00 3.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.24 2.58 6.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 77 ER16c ExonRegion 0 28.79 69.88 68.00 68.20 51.55 203.24 89.61 141.04 210.65 211.70 154.83 55.60 63.99 156.20 75.04 131.23 159.16 534.91 251.06 242.86 184.56 114.98 149.83 78 E16_Ab KnownBoundary 0 30.38 72.82 93.23 69.39 58.83 315.95 101.62 149.39 165.57 164.37 101.45 18.91 74.83 186.47 93.21 123.22 166.43 489.52 260.81 173.79 175.94 113.40 172.01 79 ER16d ExonRegion 0 31.13 119.60 81.08 75.54 71.43 225.53 112.56 148.65 214.64 246.59 145.33 33.67 60.23 148.38 74.70 124.77 163.62 448.19 222.15 211.14 171.02 104.75 148.78 80 E16_Dc KnownBoundary 1 81.50 233.97 107.92 155.72 173.94 303.86 201.51 230.88 299.10 365.59 193.84 35.71 40.42 205.19 24.11 197.73 158.30 467.93 573.10 264.87 91.68 255.83 260.10 81 ER16e ExonRegion 0 88.85 201.17 192.77 162.73 159.38 454.47 166.01 260.42 276.65 295.98 138.17 60.07 82.92 125.68 85.47 132.05 137.97 467.16 259.00 217.42 162.57 144.82 165.95 82 E16_Ac KnownBoundary 0 162.55 280.81 213.77 193.81 187.27 366.61 92.08 219.01 170.57 186.66 55.70 7.35 6.49 18.78 66.14 64.34 43.29 271.98 154.55 81.69 53.25 137.22 111.48 83 E16_Ad KnownBoundary 0 151.36 307.25 120.69 96.03 134.80 293.24 63.51 122.07 120.40 154.56 45.85 0.00 19.80 29.37 45.24 80.15 60.03 217.26 131.49 114.35 73.52 65.70 60.10 84 ER16f ExonRegion 1 242.98 463.66 326.44 276.94 273.46 603.32 144.31 306.28 278.64 345.68 98.19 8.66 31.89 88.03 139.84 145.04 108.93 397.27 248.46 179.15 141.92 174.18 159.17 85 ER16g ExonRegion 1 76.90 174.16 190.59 137.56 102.43 207.48 65.96 168.72 161.11 168.97 71.88 6.27 12.24 62.75 80.91 75.74 90.65 174.74 119.36 107.95 113.45 83.30 69.94 86 ER16h ExonRegion 0 12.40 16.27 7.88 14.80 6.50 8.38 11.16 8.89 9.53 12.12 5.25 0.00 8.04 8.12 6.63 1.70 3.30 12.67 4.10 4.26 6.30 2.38 6.71