Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 GZF1 Gene 0 33.23 42.46 33.41 39.72 42.63 51.99 34.64 37.27 28.95 41.11 52.65 66.76 53.75 50.20 29.51 54.30 44.22 37.18 25.54 36.17 26.00 37.83 31.61 2 338121 Transcript 0 11.41 11.19 4.31 4.78 6.92 22.09 15.90 9.07 7.62 10.75 25.66 5.00 5.44 4.38 5.54 18.40 20.52 11.32 12.60 8.52 8.16 11.58 9.27 3 424216 Transcript 0 0.01 0.15 0.03 1.23 0.42 1.30 0.91 0.00 0.60 0.00 2.58 0.40 1.12 1.35 0.28 0.83 0.16 2.56 2.40 1.51 3.67 0.48 0.22 4 377051 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 461789 Transcript 0 6.82 0.00 4.11 4.99 0.00 0.00 3.71 0.00 4.46 2.77 7.90 0.00 6.33 7.42 0.00 4.36 8.51 10.53 13.18 5.88 4.94 8.82 0.00 6 477239 Transcript 0 0.00 3.16 12.57 1.60 0.00 0.00 12.63 2.55 1.77 2.93 7.26 30.76 6.82 0.00 10.63 0.00 0.00 3.81 0.00 3.26 0.00 2.45 0.00 7 ER1a ExonRegion 0 8.54 15.11 3.35 2.07 1.29 18.21 13.67 6.33 5.03 8.52 23.40 1.47 7.62 6.21 10.05 12.84 24.23 6.10 13.71 5.32 7.75 11.91 12.95 8 E1a_E4a KnownJunction 0 24.15 16.64 9.11 11.12 11.88 47.13 34.05 16.76 16.32 23.61 53.59 6.30 5.84 5.30 4.94 39.22 34.22 27.86 24.09 19.18 16.74 22.84 14.85 9 ER2a ExonRegion 0 0.00 0.59 0.00 0.59 0.26 0.35 0.13 0.00 0.54 0.00 0.57 0.00 0.00 0.93 0.00 1.71 0.63 3.11 0.61 1.02 2.86 0.80 0.85 10 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.50 0.00 0.00 11 E3_Aa NovelBoundary 0 7.56 0.00 2.93 2.03 4.33 13.74 0.00 2.55 8.65 0.00 2.32 0.00 0.00 0.00 8.90 4.10 8.88 4.81 0.00 5.75 2.35 9.00 13.06 12 ER3a ExonRegion 0 0.02 0.02 0.13 0.67 1.41 4.84 3.52 0.00 1.87 0.00 7.11 1.61 4.50 2.34 1.14 1.62 0.00 4.72 4.20 2.15 6.34 1.12 0.03 13 E3_Da NovelBoundary 0 0.00 0.00 2.69 0.00 3.90 0.00 0.00 0.00 1.68 0.00 0.00 0.00 0.00 2.35 0.00 0.00 8.42 4.23 4.71 0.00 0.00 2.57 12.80 14 E3a_E4a KnownJunction 0 0.00 0.00 0.00 3.66 0.00 0.00 0.00 0.00 0.00 0.00 2.63 0.00 0.00 2.12 0.00 0.00 0.00 2.40 4.80 2.88 0.00 0.00 0.00 15 E4_Ab NovelBoundary 0 31.64 32.49 6.12 9.66 23.34 95.97 37.05 10.27 11.86 15.66 49.33 0.00 0.00 28.25 10.75 49.22 18.14 25.54 36.61 38.54 30.64 11.88 52.33 16 ER4a ExonRegion 1 24.82 25.97 7.35 9.35 12.89 69.60 34.24 12.96 12.52 19.65 58.25 5.31 6.61 23.55 11.21 45.93 28.81 26.54 29.25 28.72 25.04 18.37 37.24 17 ER4b ExonRegion 0 4.09 7.36 10.60 11.35 6.31 29.73 8.95 15.08 16.21 19.62 54.85 23.29 12.06 25.59 13.33 29.48 42.02 32.38 22.34 31.55 29.10 17.52 27.08 18 E4_Da KnownBoundary 0 0.00 9.14 21.97 22.67 8.06 2.90 1.90 30.68 21.56 30.09 45.70 23.71 34.09 48.62 28.80 78.10 72.09 47.84 25.13 66.41 47.57 32.09 26.72 19 ER4c ExonRegion 1 8.32 20.29 13.53 23.81 19.44 45.41 20.97 19.87 29.41 37.99 61.52 49.36 51.30 78.10 18.58 67.65 58.96 58.28 28.63 38.53 55.19 32.99 41.84 20 E4_Ac KnownBoundary 0 9.71 11.84 21.44 22.51 14.52 16.98 19.87 19.63 28.47 37.88 35.54 20.26 40.09 51.68 29.54 63.74 44.51 68.61 27.39 24.16 48.06 26.02 19.46 21 ER4d ExonRegion 0 5.34 17.30 14.51 16.47 10.83 33.38 15.39 12.41 13.04 27.30 42.11 22.24 40.94 62.47 23.07 54.82 44.39 55.59 22.13 35.37 37.73 18.37 36.84 22 E4b_E5a KnownJunction 0 6.89 59.79 22.53 21.08 10.36 20.10 22.30 25.18 16.03 29.04 56.91 50.42 95.77 70.52 23.36 75.28 47.50 32.33 21.65 39.88 16.74 29.21 33.63 23 E4b_E6a KnownJunction 0 6.82 0.00 4.11 4.99 0.00 0.00 3.71 0.00 4.46 2.77 7.90 0.00 6.33 7.42 0.00 4.36 8.51 10.53 13.18 5.88 4.94 8.82 0.00 24 I4_SR2 SilentIntronRegion 0 1.21 4.23 0.47 2.64 2.48 1.65 2.57 4.27 6.67 5.22 4.31 17.09 9.46 1.55 3.13 2.65 8.31 2.92 0.00 5.43 1.00 9.54 0.79 25 I4_AR2 ActiveIntronRegion 0 1.22 1.98 1.20 3.50 3.92 1.41 3.73 2.89 3.05 4.02 6.01 13.35 8.43 4.95 2.03 5.05 6.71 2.79 1.55 5.18 3.48 7.34 2.50 26 ER5a ExonRegion 0 14.21 43.78 26.43 32.90 34.08 39.69 24.00 28.75 18.46 56.71 70.99 47.53 83.98 62.08 26.02 78.15 49.58 55.94 45.67 37.47 27.44 42.44 36.20 27 E5a_E6a KnownJunction 1 3.41 44.27 32.64 33.50 32.77 40.43 30.34 34.17 15.65 62.37 48.49 59.87 38.31 44.50 20.15 75.96 25.81 57.99 25.60 21.09 31.69 44.15 46.86 28 I5 Intron 0 4.15 7.65 3.58 4.07 4.70 4.95 7.63 6.42 5.57 5.80 7.42 14.51 9.46 5.98 1.86 5.34 6.34 2.07 2.08 7.30 0.99 7.49 4.08 29 I5_SR1 SilentIntronRegion 0 3.79 5.00 1.91 2.81 2.23 4.77 5.46 4.85 4.31 5.43 6.89 15.72 9.06 5.74 1.40 5.94 6.18 2.13 2.31 7.11 1.04 6.94 3.84 30 I5_AR2 ActiveIntronRegion 0 5.05 11.57 5.67 6.06 7.46 5.59 11.08 8.93 7.28 6.39 8.38 14.07 11.03 6.37 2.45 5.13 6.87 1.89 1.63 7.60 1.01 8.86 4.04 31 E6_Aa NovelBoundary 0 2.82 36.84 6.92 1.93 24.45 13.23 13.20 21.81 9.64 6.04 9.53 37.21 6.82 2.35 4.45 0.00 8.51 8.66 0.00 5.69 2.47 21.13 4.01 32 ER6a ExonRegion 0 21.82 46.22 40.18 52.26 45.37 64.27 44.61 49.43 32.78 62.14 94.62 96.31 57.52 78.64 32.92 105.29 79.49 75.57 36.23 50.54 38.10 70.10 66.85 33 E6_Ab KnownBoundary 0 23.63 61.17 41.93 50.38 48.30 67.69 59.62 46.62 48.73 69.63 80.23 118.24 65.90 96.77 44.50 102.02 112.58 80.05 72.38 39.56 49.73 69.81 65.39 34 ER6b ExonRegion 0 11.99 52.48 42.75 56.67 30.47 50.84 57.48 54.01 39.76 63.62 64.38 96.45 93.41 83.69 38.93 100.39 85.46 88.54 64.50 33.57 59.93 75.18 48.13 35 E6_Da NovelBoundary 1 7.26 43.81 24.45 38.22 23.09 31.00 54.01 41.32 15.34 31.40 39.75 119.89 152.91 76.05 29.17 83.23 62.27 53.39 50.26 23.59 52.20 61.36 47.38 36 E6b_E7a KnownJunction 0 7.26 37.10 37.91 49.11 30.73 34.24 29.46 39.31 23.29 48.86 33.27 60.62 33.76 65.98 21.51 88.01 47.78 78.06 44.33 36.56 43.12 51.74 51.73 37 E6b_E8a KnownJunction 0 0.00 3.16 12.57 1.60 0.00 0.00 12.63 2.55 1.77 2.93 7.26 30.76 6.82 0.00 10.63 0.00 0.00 3.81 0.00 3.26 0.00 2.45 0.00 38 ER6c ExonRegion 1 9.81 39.47 39.99 55.01 27.61 31.51 47.06 48.24 32.79 50.41 44.72 94.46 101.26 80.32 34.95 97.40 69.17 83.82 49.08 35.78 54.99 63.74 51.66 39 I6 Intron 0 3.18 4.83 4.78 4.18 7.84 7.70 5.66 8.36 6.12 3.38 11.02 10.31 7.36 6.70 3.14 8.00 8.63 3.93 3.53 6.57 1.75 7.09 3.95 40 I6_AR1 ActiveIntronRegion 0 3.68 5.35 5.49 4.81 8.81 8.48 6.15 9.53 6.99 3.84 12.40 11.97 8.42 7.52 3.64 9.25 9.47 4.46 4.11 7.55 1.90 8.25 4.60 41 E7_Aa NovelBoundary 0 3.33 5.13 4.44 4.99 4.07 16.30 4.50 13.60 8.10 10.91 9.42 5.25 0.00 9.71 0.00 11.45 4.58 7.92 13.08 5.75 6.18 6.06 0.00 42 ER7a ExonRegion 0 22.09 42.15 28.66 34.79 34.29 44.95 23.14 24.44 26.37 39.17 47.37 58.37 45.15 62.50 22.62 82.09 53.23 60.06 28.67 45.38 48.04 49.03 33.94 43 E7_Da NovelBoundary 0 11.19 6.45 9.61 5.96 4.33 4.60 5.83 3.94 6.66 5.48 6.69 6.30 0.00 7.59 0.00 11.88 12.44 7.34 9.60 2.81 9.39 0.00 0.00 44 E7a_E8a KnownJunction 0 6.52 45.72 34.30 47.88 45.16 51.45 37.89 22.26 27.34 24.85 36.43 41.41 39.61 52.39 22.25 60.75 30.11 43.07 37.65 29.85 49.67 17.33 19.29 45 I7 Intron 0 8.04 2.97 2.94 2.08 6.65 5.90 3.48 6.02 6.19 3.25 9.04 6.36 5.24 11.88 5.34 13.46 10.61 5.37 7.91 5.60 5.47 4.57 5.58 46 I7_SR1 SilentIntronRegion 0 1.51 0.00 0.00 1.03 0.00 6.21 1.30 3.92 0.43 1.40 7.46 1.06 4.12 13.03 6.45 12.07 7.48 3.85 5.07 4.21 4.99 0.00 1.86 47 I7_AR1 ActiveIntronRegion 0 9.15 3.48 3.44 2.26 7.78 5.88 3.87 6.40 7.17 3.57 9.36 7.28 5.46 11.77 5.19 13.77 11.20 5.65 8.42 5.86 5.59 5.35 6.23 48 E8_Aa NovelBoundary 0 17.41 0.00 7.69 6.96 3.23 20.44 3.97 14.46 11.34 1.21 12.74 0.00 6.82 7.06 0.00 23.67 9.26 8.21 4.14 2.81 6.30 10.84 35.00 49 ER8a ExonRegion 0 30.14 57.18 45.96 59.36 33.64 68.49 40.38 38.69 45.65 52.24 67.83 63.33 47.10 81.73 40.41 108.02 49.13 91.86 48.23 64.28 56.88 64.82 65.72 50 E8_Da KnownBoundary 0 48.45 75.51 55.56 65.99 57.30 71.21 58.38 56.64 41.67 50.47 83.23 47.72 25.16 96.36 26.95 132.61 103.60 78.10 33.98 72.93 52.94 47.70 57.96 51 ER8b ExonRegion 0 58.49 64.19 51.26 58.01 70.74 70.27 51.87 58.15 38.41 53.78 61.37 100.69 72.87 47.94 41.20 53.51 48.11 25.63 26.87 40.58 15.28 47.64 29.59 52 ER8c ExonRegion 0 1.53 1.81 0.48 1.14 7.58 0.92 0.00 4.13 1.51 0.13 0.00 7.22 2.87 1.62 1.61 3.14 3.12 0.00 0.00 1.06 0.00 0.00 0.00 53 IG8 Intergenic 0 8.13 3.69 3.41 4.63 10.41 10.94 6.25 9.22 8.98 4.17 7.32 14.06 6.54 7.91 4.52 10.95 8.22 8.29 5.46 7.29 0.80 2.27 2.29 54 IG8_SR1 SilentIntergenicRegion 0 7.49 4.53 6.13 4.96 10.11 9.51 6.21 9.21 8.49 5.35 8.66 15.02 5.63 8.02 4.92 10.49 5.98 6.73 3.28 7.16 1.08 1.80 0.85 55 IG8_AR1 ActiveIntergenicRegion 0 8.57 1.98 4.90 2.21 18.73 8.94 2.48 10.11 10.62 2.61 9.71 0.32 2.58 5.36 2.25 9.44 8.99 9.61 11.63 2.34 1.65 0.00 0.00 56 IG8_SR2 SilentIntergenicRegion 0 10.58 2.03 3.27 4.09 12.04 1.83 2.65 12.96 10.09 2.29 3.87 4.33 0.00 4.87 4.84 8.42 3.30 9.24 6.90 5.32 0.00 0.00 0.00 57 IG8_AR2 ActiveIntergenicRegion 0 6.14 2.03 1.84 4.09 11.24 7.98 2.65 13.57 9.57 1.95 2.13 5.20 0.00 7.31 11.61 3.27 1.49 7.76 6.05 7.34 0.00 0.52 0.00 58 IG8_AR4 ActiveIntergenicRegion 0 8.83 3.95 2.02 5.06 10.94 12.79 7.05 8.69 10.12 4.09 6.89 16.70 9.41 8.58 4.34 12.97 11.30 10.54 7.70 7.50 0.76 3.20 3.41