Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RPRD1B Gene 0 107.89 141.77 89.02 164.68 143.66 143.53 114.42 116.78 102.74 136.81 189.37 159.87 134.40 185.49 111.40 152.79 160.01 99.00 70.41 107.61 69.75 89.90 68.41 2 373433 Transcript 0 67.00 87.29 58.90 110.71 94.38 101.92 81.41 96.89 76.18 109.10 148.76 125.40 96.64 153.42 82.20 137.70 142.45 86.22 55.07 89.43 71.79 65.52 63.31 3 462548 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 1.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 495457 Transcript 0 10.74 2.76 1.51 17.85 8.49 0.00 6.14 7.64 4.05 4.97 14.85 6.30 6.66 0.00 4.45 0.00 9.16 6.34 0.00 5.56 0.00 3.00 0.00 5 449186 Transcript 0 0.00 0.85 0.00 0.00 1.12 0.77 1.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.86 3.73 1.38 0.02 0.00 1.78 0.00 0.00 0.00 6 471511 Transcript 0 0.17 0.11 0.08 0.00 0.22 0.07 0.00 0.21 0.02 0.05 0.13 0.00 0.00 0.02 2.71 0.00 0.00 1.59 0.00 0.14 0.06 0.00 0.16 7 484683 Transcript 0 2.78 4.21 3.78 8.60 12.08 11.22 8.09 10.42 13.15 9.16 6.73 6.06 7.55 6.09 5.78 16.49 8.08 17.55 8.09 17.22 8.30 5.29 4.97 8 ER1a ExonRegion 1 3.00 10.82 4.23 4.38 5.31 38.08 9.75 9.76 5.46 20.85 51.08 10.66 5.68 27.47 18.28 53.43 49.51 38.21 41.37 28.66 30.73 12.96 53.54 9 E1_Ab KnownBoundary 0 0.00 3.09 9.85 4.93 0.00 7.50 0.00 18.77 3.36 32.80 71.49 12.30 20.29 46.21 29.30 56.82 90.70 27.94 4.42 53.43 58.38 2.51 12.98 10 ER1b ExonRegion 0 1.38 7.11 4.47 8.98 8.15 24.88 10.94 13.59 11.45 37.25 45.63 7.04 9.47 63.07 32.84 93.27 51.15 52.20 73.05 43.73 33.53 35.52 84.81 11 E1_Ac KnownBoundary 1 3.78 12.17 5.80 24.54 18.93 44.86 12.37 19.84 27.89 70.35 27.53 0.00 21.75 119.84 23.61 89.98 72.46 67.82 49.79 40.46 30.27 48.44 61.63 12 ER1c ExonRegion 1 9.76 25.62 16.47 25.15 18.56 46.11 23.06 27.54 31.23 62.49 115.04 22.93 39.60 132.00 41.71 84.43 102.48 74.15 34.93 66.94 72.95 39.82 42.85 13 E1_Da NovelBoundary 0 14.15 2.83 8.90 3.83 11.88 8.35 0.00 9.90 7.32 24.07 9.90 0.00 13.31 10.12 4.45 4.27 13.28 33.83 4.80 20.45 14.15 3.12 0.00 14 E1a_E2a KnownJunction 1 9.41 52.29 29.06 30.90 51.19 121.80 24.64 36.97 54.86 85.21 158.62 50.87 61.52 195.95 38.07 71.35 159.79 91.74 22.21 99.46 99.40 61.48 40.72 15 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.79 1.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 I1_SR1 SilentIntronRegion 0 8.32 12.41 9.79 10.85 13.30 3.24 12.66 18.42 13.35 16.52 4.10 10.16 14.98 3.22 6.60 9.05 10.32 6.88 7.38 22.46 3.52 1.52 4.84 17 I1_AR2 ActiveIntronRegion 0 6.88 22.00 8.52 11.95 11.01 9.28 17.92 24.50 24.78 24.98 3.53 11.45 22.14 2.65 14.28 6.99 8.09 4.91 8.46 19.91 3.22 2.24 5.29 18 I1_SR2 SilentIntronRegion 0 7.15 15.09 7.89 12.63 16.64 4.17 12.88 25.06 12.74 16.30 1.64 6.15 10.27 1.25 9.68 7.78 5.88 4.68 7.32 17.09 1.26 0.87 2.96 19 E2_Aa NovelBoundary 0 3.11 11.97 18.42 19.84 70.03 2.16 28.79 57.67 25.32 34.41 0.00 12.60 31.98 2.47 10.75 8.72 0.00 0.00 4.80 8.69 0.00 0.00 3.24 20 ER2a ExonRegion 0 16.90 65.12 40.19 67.92 79.98 120.64 87.46 79.55 79.49 112.86 232.75 139.04 136.12 226.05 68.83 153.73 217.00 102.62 52.04 129.16 106.76 78.60 54.03 21 E2a_E3a KnownJunction 1 10.00 33.02 32.17 59.63 59.93 76.09 75.96 117.76 83.42 132.54 180.78 159.20 119.64 227.97 62.18 193.11 208.70 120.80 43.39 110.90 123.31 68.46 67.86 22 E2a_E5a KnownJunction 0 10.74 2.76 1.51 17.85 8.49 0.00 6.14 7.64 4.05 4.97 14.85 6.30 6.66 0.00 4.45 0.00 9.16 6.34 0.00 5.56 0.00 3.00 0.00 23 ER3a ExonRegion 0 17.55 59.41 42.71 68.64 72.64 100.74 78.18 101.99 86.11 140.19 259.31 205.00 141.68 242.21 71.34 191.17 267.13 124.06 52.37 120.26 110.78 89.64 72.50 24 E3a_E5a KnownJunction 1 25.41 55.91 42.16 72.55 95.16 120.61 68.05 86.05 65.97 134.42 228.11 95.73 93.66 256.17 54.89 128.34 225.25 92.65 73.41 110.45 98.72 101.83 85.88 25 ER4a ExonRegion 0 0.00 1.70 0.00 0.00 2.24 1.53 2.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.71 7.45 2.76 0.03 0.00 3.56 0.00 0.00 0.00 26 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27 ER5a ExonRegion 0 18.40 69.67 48.49 81.71 103.81 118.61 91.61 93.73 96.37 157.63 311.83 181.99 229.97 273.17 80.64 217.10 264.18 147.97 105.01 112.45 150.88 99.75 101.98 28 E5_Da NovelBoundary 1 28.23 84.92 46.54 48.45 143.55 103.29 102.28 74.84 100.35 126.90 297.65 202.42 172.88 247.69 63.66 200.12 247.87 151.51 68.99 103.55 115.03 88.30 85.79 29 E5b_E6a KnownJunction 1 19.41 84.13 40.57 65.46 136.25 144.63 105.81 90.69 88.71 141.70 293.92 271.29 195.28 278.89 36.59 241.65 219.26 168.05 112.47 126.17 129.92 117.75 123.78 30 ER5b ExonRegion 1 18.79 77.28 43.28 55.01 133.25 111.05 87.43 86.63 91.45 139.05 308.49 210.41 195.11 275.65 48.74 217.08 233.18 170.51 80.40 116.77 129.05 102.01 106.66 31 ER6a ExonRegion 1 25.86 70.03 53.11 53.75 93.82 142.86 88.75 105.06 87.38 146.95 302.62 218.23 179.83 300.97 82.05 231.55 236.32 169.47 84.81 135.97 127.33 103.79 134.44 32 E6_Da KnownBoundary 0 53.49 82.09 78.97 55.84 71.73 170.64 118.80 130.37 86.11 154.46 323.19 175.26 157.78 348.11 115.09 263.61 275.74 171.82 94.87 155.00 131.71 98.34 163.98 33 ER6b ExonRegion 1 31.64 82.52 60.51 70.90 76.16 115.70 101.08 103.02 99.33 150.47 284.95 161.10 133.54 273.69 74.91 174.14 232.49 125.01 109.48 116.80 144.12 91.26 102.97 34 E6b_E7a KnownJunction 0 9.71 107.09 50.56 70.12 82.26 128.56 127.10 78.57 68.66 113.14 224.32 120.94 122.07 271.18 88.76 179.01 173.07 94.43 96.19 91.34 94.89 82.79 43.79 35 I6_AR1 ActiveIntronRegion 0 19.19 14.22 7.83 9.96 6.66 6.52 24.28 15.61 14.40 13.86 5.67 15.49 27.75 7.52 7.50 24.70 14.90 6.08 7.15 15.81 8.44 10.34 11.77 36 I6_AR4 ActiveIntronRegion 1 4.50 11.18 1.23 5.45 16.72 1.38 21.68 25.06 13.59 5.02 0.00 11.36 41.62 3.25 0.00 17.83 9.90 4.85 0.00 10.37 7.16 1.30 8.44 37 E7_Aa NovelBoundary 0 23.19 24.01 4.76 10.32 32.85 19.59 62.93 22.10 4.54 11.15 2.26 13.65 27.60 14.66 14.59 23.58 24.78 12.81 4.05 0.00 2.66 5.57 7.68 38 ER7a ExonRegion 1 39.60 89.40 48.40 58.49 105.75 119.61 108.31 79.27 83.74 117.82 193.16 171.92 199.46 256.81 69.35 157.56 230.56 98.97 71.67 115.96 94.30 82.04 81.79 39 E7a_E10a KnownJunction 1 26.82 139.98 37.46 75.22 127.25 141.34 78.92 89.75 78.62 128.56 253.70 145.70 117.04 255.75 55.63 166.62 266.76 105.08 57.88 106.49 131.46 108.63 78.79 40 I7 Intron 0 8.03 8.86 6.80 16.45 10.56 8.24 25.85 16.93 17.39 13.17 7.65 20.56 30.10 5.67 7.93 18.02 23.19 16.19 11.89 37.69 7.75 4.16 11.72 41 I7_SR1 SilentIntronRegion 0 9.80 8.64 5.41 11.77 13.78 9.21 28.46 8.64 11.14 4.40 3.98 19.58 28.00 2.99 10.09 13.78 14.03 7.81 8.20 30.14 4.25 2.95 6.43 42 I7_AR1 ActiveIntronRegion 0 8.19 8.33 8.91 12.80 12.03 9.88 20.76 8.10 8.90 7.44 6.26 9.25 17.28 6.15 7.33 17.25 17.74 19.96 7.93 27.47 6.65 0.80 13.81 43 I7_SR2 SilentIntronRegion 0 5.33 6.80 4.79 15.07 7.02 6.70 23.93 9.61 10.85 7.47 4.96 16.56 22.88 4.66 5.60 14.41 22.42 14.94 7.67 33.43 6.92 2.54 9.89 44 I7_AR2 ActiveIntronRegion 0 8.68 8.08 0.00 7.05 1.47 6.51 23.77 1.64 10.62 3.41 6.86 15.69 11.61 2.84 4.28 14.12 15.76 11.23 7.33 21.91 2.20 0.83 4.11 45 I7_AR3 ActiveIntronRegion 0 3.79 11.81 4.02 12.21 8.42 4.82 20.50 10.85 14.75 12.96 8.62 15.88 11.95 7.18 9.92 17.24 39.86 21.47 11.20 44.44 8.23 4.01 14.57 46 I7_SR3 SilentIntronRegion 0 5.99 5.73 6.67 10.47 9.24 4.74 22.85 14.97 17.91 11.93 6.78 20.66 22.89 5.02 4.64 20.74 22.45 17.28 12.10 41.33 8.13 3.12 10.77 47 I7_AR4 ActiveIntronRegion 0 9.47 7.43 4.56 14.59 9.67 9.00 28.71 21.56 20.20 16.55 7.06 30.14 40.02 4.71 3.52 12.38 20.60 8.01 9.23 35.43 3.16 4.91 9.35 48 I7_SR4 SilentIntronRegion 0 15.68 19.94 11.74 31.11 14.13 13.20 40.77 34.08 31.61 26.01 12.37 38.06 74.47 6.84 12.85 24.97 31.65 20.13 19.82 48.26 9.38 10.43 18.46 49 I7_AR5 ActiveIntronRegion 0 22.40 20.93 17.01 36.89 19.51 9.76 35.74 43.97 41.81 35.67 17.19 32.89 71.71 7.64 20.45 34.74 43.55 28.06 24.56 61.72 17.93 6.53 27.54 50 I7_SR5 SilentIntronRegion 0 7.92 9.37 7.24 18.93 12.75 11.22 25.71 19.45 17.85 14.32 9.18 17.93 28.56 7.13 10.80 17.94 20.22 16.69 14.36 35.36 8.52 5.51 11.17 51 E8_Aa NovelBoundary 0 3.78 0.00 4.91 14.38 20.88 12.55 7.68 15.65 20.20 18.62 7.84 24.91 12.50 2.47 4.45 12.65 9.16 34.24 3.76 31.70 16.62 2.82 12.21 52 ER8a ExonRegion 0 0.34 0.22 0.17 0.00 0.43 0.15 0.00 0.42 0.03 0.09 0.26 0.00 0.00 0.04 5.41 0.00 0.00 1.10 0.00 0.29 0.12 0.00 0.32 53 E8_Da NovelBoundary 0 3.04 15.52 12.06 15.12 4.33 16.47 30.30 9.57 11.26 16.28 2.37 12.60 29.22 14.83 5.32 29.65 8.98 15.05 9.22 34.39 5.62 0.00 24.67 54 E8a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.07 0.00 0.00 0.00 0.00 0.00 55 I8 Intron 0 4.88 9.16 8.42 23.50 11.07 19.87 22.44 16.13 23.79 18.27 13.30 12.84 20.28 13.60 9.56 34.40 22.72 36.23 14.34 37.55 11.22 9.76 15.27 56 I8_SR1 SilentIntronRegion 0 7.69 12.45 5.30 11.13 5.69 21.16 22.78 9.07 16.68 12.22 8.57 8.82 12.84 12.61 8.12 19.76 15.60 21.73 3.42 25.95 9.89 2.98 11.04 57 I8_AR1 ActiveIntronRegion 0 3.46 10.96 6.45 25.81 10.69 21.83 24.02 13.96 25.60 20.43 17.08 8.59 20.84 12.54 6.47 34.14 29.82 35.96 8.59 43.66 12.14 8.33 14.19 58 I8_SR2 SilentIntronRegion 0 6.37 9.36 11.65 33.46 14.76 23.32 27.14 25.39 31.63 24.76 17.17 20.42 35.51 16.67 10.31 45.37 26.87 47.83 25.42 49.48 14.99 16.07 20.79 59 I8_AR2 ActiveIntronRegion 0 3.37 6.37 8.17 17.91 10.21 14.86 16.95 12.10 18.33 13.36 9.10 10.56 8.99 11.98 11.68 30.67 16.95 31.91 12.78 27.21 7.69 7.81 12.75 60 E9_Aa NovelBoundary 0 8.89 25.13 9.17 41.55 26.83 22.09 22.30 32.69 35.30 17.27 29.48 12.30 13.31 19.54 29.17 47.85 19.54 54.14 17.32 72.23 9.08 25.29 6.74 61 ER9a ExonRegion 0 5.57 8.43 7.56 17.19 24.16 22.43 16.18 20.83 26.30 18.32 13.47 12.13 15.09 12.17 11.56 32.98 16.16 35.10 16.19 34.44 16.60 10.57 9.95 62 E9_Da NovelBoundary 0 10.37 11.64 18.42 25.34 11.29 29.41 22.79 18.24 36.28 36.83 11.90 0.00 13.64 18.60 14.09 45.80 20.48 46.80 12.80 35.73 25.64 11.51 28.34 63 E9a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 64 I9 Intron 0 16.21 19.74 12.44 34.24 27.60 34.27 29.80 27.22 26.46 21.91 17.78 14.33 16.11 12.88 12.61 30.15 23.55 36.16 13.47 35.51 14.05 11.87 16.54 65 I9_SR1 SilentIntronRegion 0 12.34 14.12 12.68 28.95 23.04 18.33 27.45 27.89 28.62 21.20 17.89 14.39 17.42 9.67 12.65 31.91 30.86 24.08 13.27 37.62 14.47 13.50 13.05 66 I9_AR1 ActiveIntronRegion 0 14.71 14.77 8.14 23.70 25.47 33.23 26.97 25.20 22.47 17.65 18.23 17.20 24.51 17.46 16.57 41.74 27.26 45.34 17.04 33.38 11.93 10.38 31.92 67 I9_AR2 ActiveIntronRegion 0 13.61 22.52 16.15 45.24 23.69 38.86 39.22 32.47 38.76 21.07 16.63 12.41 13.63 10.95 11.15 23.05 29.27 43.52 15.25 48.14 8.77 14.20 13.95 68 I9_SR2 SilentIntronRegion 0 10.88 20.65 11.55 32.01 25.02 37.72 30.76 23.12 26.77 21.03 24.00 10.49 10.50 13.56 13.23 32.46 24.48 35.71 14.08 39.37 14.15 11.99 19.52 69 I9_AR3 ActiveIntronRegion 0 20.59 22.82 13.07 37.75 32.10 39.20 28.98 27.40 23.52 24.17 16.19 14.97 14.99 13.04 11.51 26.84 17.45 36.36 11.71 30.91 16.02 11.05 12.71 70 E10_Aa NovelBoundary 0 64.90 52.69 14.52 47.11 75.38 76.15 68.10 33.56 33.33 30.38 30.90 0.00 33.11 17.13 6.30 44.43 21.79 70.51 17.79 28.32 11.68 11.57 11.01 71 ER10a ExonRegion 0 35.72 122.71 71.01 126.04 100.13 176.48 119.30 129.39 112.09 171.08 242.15 181.42 172.71 278.09 107.37 260.03 212.99 202.09 96.59 122.36 112.56 136.36 104.84 72 E10_Da KnownBoundary 1 31.34 95.64 85.45 112.14 116.98 186.77 148.21 154.15 131.45 179.71 259.38 151.70 210.86 199.42 70.21 118.77 243.85 168.09 82.92 95.11 122.69 95.65 43.36 73 ER10b ExonRegion 0 62.16 121.51 85.67 147.59 127.83 154.60 109.65 155.28 129.48 193.45 266.72 177.05 148.47 259.49 116.31 279.34 236.30 209.69 98.16 120.67 113.85 121.46 129.11 74 E10_Db KnownBoundary 1 92.31 172.86 55.65 78.25 117.66 151.90 101.57 83.79 96.21 149.54 191.79 114.19 92.04 189.59 51.80 112.36 163.44 78.43 45.65 90.89 94.27 32.76 73.50 75 ER10c ExonRegion 0 99.08 180.80 78.20 143.63 169.34 207.69 168.14 131.62 118.42 167.30 238.25 245.12 185.70 223.95 82.23 188.25 194.62 110.98 87.48 128.44 87.62 92.60 89.27 76 E10_Dc KnownBoundary 0 70.09 115.77 102.45 140.87 188.29 222.54 175.72 110.74 130.55 124.67 250.33 346.76 185.05 252.69 116.57 150.99 181.21 96.21 85.46 128.35 100.64 107.77 88.01 77 ER10d ExonRegion 0 187.99 218.03 140.29 268.11 217.91 191.58 158.51 163.15 139.67 173.92 214.41 206.34 164.62 204.82 166.13 166.56 169.14 99.67 80.44 128.73 61.34 115.13 68.54