Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SNTA1 Gene 0 19.68 17.27 77.35 39.71 13.63 42.57 26.44 43.81 41.25 55.72 10.02 5.45 1.75 5.40 9.07 8.28 5.39 42.85 35.79 19.32 88.99 39.48 49.75 2 443021 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 217381 Transcript 0 7.96 8.28 62.78 32.59 6.85 28.88 24.91 40.98 34.43 48.61 4.47 4.11 0.42 5.18 5.82 6.43 5.28 38.41 24.11 14.59 91.37 47.01 43.79 4 ER1a ExonRegion 0 1.01 1.47 6.67 2.43 1.51 8.70 3.40 4.94 6.24 10.62 2.65 0.68 0.00 1.05 0.72 2.14 0.75 7.68 8.72 3.70 26.96 2.53 11.75 5 E1a_E2a KnownJunction 0 3.56 11.58 52.72 25.64 15.11 41.57 37.19 34.26 37.99 53.27 11.58 5.70 0.00 0.00 0.00 8.63 8.60 59.65 43.30 18.28 101.25 14.33 24.67 6 E2_Aa NovelBoundary 0 0.00 8.75 9.79 27.14 0.00 9.48 3.97 9.20 11.05 10.15 0.00 0.00 0.00 4.65 5.07 4.36 4.39 8.37 4.80 2.56 3.15 0.00 3.84 7 ER2a ExonRegion 0 6.28 15.19 99.26 48.25 17.05 40.27 21.20 45.02 52.41 80.23 15.04 8.36 4.24 3.69 7.78 6.90 3.94 53.68 49.78 28.09 110.48 34.47 50.21 8 E2_Da NovelBoundary 0 3.56 2.57 14.69 20.14 0.00 28.00 2.21 14.70 7.87 11.39 2.68 6.30 0.00 2.47 0.00 0.00 0.00 12.81 4.80 18.02 0.00 0.00 0.00 9 E2a_E3a KnownJunction 0 20.52 14.87 124.27 42.52 29.03 37.88 36.92 56.19 68.20 88.99 11.63 7.65 0.00 2.47 8.90 18.80 9.26 73.54 58.17 24.22 179.90 62.46 68.97 10 I2 Intron 0 4.49 8.57 14.84 18.01 6.51 15.17 4.99 8.61 8.07 9.68 1.76 3.73 1.22 3.31 4.69 2.85 2.06 11.89 9.27 9.01 4.06 2.90 7.32 11 I2_SR1 SilentIntronRegion 0 3.76 7.93 15.21 17.33 6.77 14.37 5.00 7.52 6.97 8.39 1.31 3.22 0.99 2.54 4.00 2.28 2.20 10.76 8.98 7.58 3.24 2.41 6.06 12 I2_AR1 ActiveIntronRegion 0 2.48 9.06 14.74 20.17 4.64 12.75 4.96 13.22 10.73 11.04 1.59 4.18 0.82 6.27 6.32 2.54 2.11 15.10 8.84 11.07 7.79 4.64 9.38 13 I2_SR2 SilentIntronRegion 0 6.83 9.95 14.01 19.04 6.44 17.80 4.99 9.93 9.96 12.39 2.87 4.83 1.86 4.32 5.90 4.30 1.69 13.71 10.09 11.89 4.98 3.59 9.75 14 E3_Aa NovelBoundary 0 5.93 12.37 13.60 31.96 12.14 27.20 6.40 8.30 15.54 14.45 2.68 6.30 0.00 2.47 8.90 21.53 0.00 4.10 7.81 11.31 3.03 3.12 4.01 15 ER3a ExonRegion 0 18.90 25.12 123.71 51.90 26.20 67.48 37.29 55.79 60.56 89.70 9.58 14.83 1.97 5.71 13.57 10.86 5.89 76.25 63.65 29.35 142.66 53.44 71.60 16 E3_Da NovelBoundary 0 0.00 12.30 7.48 11.65 0.00 7.55 2.12 2.09 11.92 21.27 2.68 6.30 0.00 4.83 0.00 7.78 0.00 11.57 14.12 2.81 11.18 0.00 7.94 17 E3a_E4a KnownJunction 0 15.34 21.31 99.64 29.77 19.35 61.44 49.82 49.04 47.05 56.46 9.74 0.00 0.00 0.00 6.30 7.35 0.00 42.53 26.07 8.50 112.13 57.74 62.14 18 I3 Intron 0 6.34 9.22 16.22 19.03 11.33 15.74 5.80 7.72 9.17 11.08 4.20 8.79 3.50 8.30 10.64 5.01 4.33 19.48 18.98 15.95 4.71 3.83 6.93 19 I3_SR1 SilentIntronRegion 0 6.36 9.25 16.26 19.08 11.36 15.78 5.82 7.74 9.20 11.11 4.21 8.82 3.51 8.33 10.67 5.03 4.34 19.54 19.03 15.99 4.72 3.84 6.95 20 E4_Aa NovelBoundary 0 6.45 12.56 34.45 28.37 7.81 42.99 10.42 5.38 7.78 26.43 7.26 18.01 0.00 2.47 19.41 7.52 0.00 29.39 12.52 13.55 12.05 2.76 10.59 21 ER4a ExonRegion 0 14.02 18.00 94.90 34.92 11.71 58.62 41.63 54.46 40.15 62.40 12.23 6.88 3.08 9.56 14.60 12.28 3.25 71.73 28.72 22.88 111.38 43.21 59.60 22 E4_Da KnownBoundary 0 10.67 23.09 107.21 43.88 24.11 57.98 64.17 72.29 56.71 72.98 14.27 6.15 0.00 24.02 23.98 11.88 4.30 104.96 32.66 17.96 111.76 42.80 69.66 23 E4a_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 ER4b ExonRegion 0 12.92 13.09 98.61 56.75 11.87 40.27 34.54 61.93 50.98 80.99 10.68 8.10 1.34 10.79 13.89 16.68 7.34 67.19 45.92 23.49 133.93 60.12 75.19 25 E4_Db NovelBoundary 0 0.00 9.60 20.46 11.65 0.00 11.47 0.00 6.49 5.76 15.42 0.00 11.40 0.00 7.00 4.45 11.19 3.46 26.61 13.46 26.33 3.03 2.88 26.12 26 E4b_E5a KnownJunction 0 3.48 5.33 69.31 27.34 4.33 21.29 36.57 44.40 42.62 42.95 2.68 0.00 0.00 0.00 0.00 4.36 9.44 26.94 8.56 11.89 109.90 69.07 33.12 27 I4 Intron 0 4.38 4.20 1.26 4.90 0.92 8.85 3.19 6.21 2.54 6.48 1.33 1.23 1.14 5.46 2.82 7.17 2.27 20.25 5.49 11.73 2.28 0.00 4.05 28 I4_SR1 SilentIntronRegion 0 4.56 4.38 1.31 5.06 0.96 9.22 3.31 6.48 2.64 6.75 1.39 1.28 1.19 5.65 2.94 7.47 2.37 21.11 5.70 12.23 2.37 0.00 4.22 29 E5_Aa NovelBoundary 0 3.78 11.77 16.94 13.98 3.48 5.51 10.11 1.77 4.28 8.68 0.00 0.00 0.00 4.94 4.45 4.36 4.77 14.84 0.00 2.62 8.83 3.12 0.00 30 ER5a ExonRegion 0 15.46 13.69 81.96 46.27 11.21 53.95 28.52 57.59 42.89 70.51 4.53 8.33 0.36 9.91 9.40 4.67 4.35 57.65 41.97 22.97 121.65 58.84 66.84 31 E5_Ab KnownBoundary 0 13.34 36.84 142.93 80.78 12.31 85.75 40.36 91.43 58.39 87.25 6.21 17.86 0.00 7.06 14.09 12.30 4.21 97.00 73.04 15.79 136.59 65.70 98.42 32 ER5b ExonRegion 0 16.69 27.41 85.54 44.06 14.05 62.28 33.18 62.49 40.69 59.24 9.00 4.33 7.04 6.03 7.31 12.75 6.41 54.62 37.73 28.85 122.64 48.92 75.51 33 E5_Da NovelBoundary 0 11.34 9.41 6.39 21.44 3.74 31.46 10.02 4.76 21.70 11.28 0.00 0.00 6.82 0.00 4.45 0.00 3.65 20.06 18.64 8.63 32.99 8.21 16.13 34 E5a_E6a KnownJunction 0 32.75 21.38 68.42 39.32 3.82 36.68 34.36 45.35 39.73 44.81 9.84 0.00 0.00 2.30 5.19 7.78 4.11 33.66 13.27 23.59 98.60 37.41 54.97 35 I5 Intron 0 9.81 12.36 10.72 11.51 8.27 16.44 7.37 5.86 9.29 12.68 4.18 5.12 7.25 8.88 11.13 3.37 6.12 13.72 16.41 17.10 11.58 6.23 12.71 36 I5_SR2 SilentIntronRegion 0 9.37 16.44 10.19 8.99 10.81 16.23 7.64 7.97 9.21 11.51 4.09 8.19 8.34 9.76 13.30 4.00 3.81 11.32 15.94 17.61 11.45 6.42 13.56 37 I5_AR3 ActiveIntronRegion 0 12.45 10.64 15.52 21.25 7.87 20.98 9.96 5.04 13.84 20.11 6.32 2.33 8.84 9.84 10.71 1.94 10.77 23.71 21.87 22.95 14.41 6.81 15.36 38 E6_Aa NovelBoundary 0 3.26 3.35 18.89 12.45 0.00 30.32 16.52 13.02 15.89 20.20 4.32 0.00 6.82 2.12 4.45 8.03 11.87 30.84 8.38 17.90 11.61 2.69 16.82 39 ER6a ExonRegion 0 21.67 27.24 78.70 39.97 11.72 49.82 38.12 38.81 36.26 50.15 12.74 0.92 2.67 7.84 16.80 9.72 12.42 50.97 29.83 29.21 99.73 36.74 51.23 40 E6_Da NovelBoundary 0 6.82 15.66 13.01 14.98 3.99 21.24 1.90 12.94 10.21 11.34 17.90 6.00 0.00 0.00 15.20 4.19 13.65 11.69 17.69 17.90 13.90 0.00 3.59 41 E6a_E7a KnownJunction 0 27.26 21.31 77.79 42.65 11.38 32.08 28.75 59.68 44.65 38.33 24.01 0.00 8.28 0.00 8.90 8.03 8.98 54.80 12.99 20.58 114.23 34.78 51.22 42 I6 Intron 0 10.68 14.74 6.36 7.27 4.42 12.78 4.61 6.85 6.75 5.33 1.95 1.71 1.49 1.79 5.28 3.00 2.73 5.56 7.30 8.39 5.85 2.29 6.46 43 I6_AR1 ActiveIntronRegion 0 12.18 5.12 1.75 4.56 12.42 13.40 6.67 7.28 3.84 2.08 1.22 2.62 0.00 3.55 5.37 1.10 6.24 5.73 4.01 11.40 5.55 0.72 7.40 44 I6_SR1 SilentIntronRegion 0 10.47 16.44 7.18 7.76 3.07 12.72 4.28 6.81 7.28 5.91 2.08 1.56 1.76 1.49 5.28 3.34 2.14 5.56 7.90 7.91 5.93 2.57 6.33 45 E7_Aa NovelBoundary 0 11.85 8.55 2.99 18.51 6.79 36.63 4.50 12.40 13.14 15.04 0.00 0.00 0.00 0.00 15.95 8.29 0.00 14.18 14.02 14.89 8.71 6.25 0.00 46 ER7a ExonRegion 0 31.31 26.47 136.82 75.18 15.54 61.88 44.82 65.11 71.52 67.15 16.38 5.32 0.57 7.21 12.16 11.26 6.94 67.58 65.10 35.25 116.14 60.22 60.76 47 E7_Da NovelBoundary 0 0.00 2.63 4.46 1.53 4.24 0.00 0.00 11.75 5.50 9.24 2.26 0.00 0.00 7.24 0.00 8.46 0.00 15.30 4.05 7.67 0.00 0.00 0.00 48 E7a_E8a KnownJunction 0 63.34 18.62 157.95 102.75 19.52 47.53 44.83 93.90 112.85 93.29 18.32 29.56 0.00 4.71 8.90 8.72 0.00 77.68 67.30 38.80 101.62 62.89 70.42 49 E8_Aa NovelBoundary 0 7.11 8.81 12.36 5.06 4.33 10.11 3.97 6.28 1.65 2.39 2.63 0.00 6.01 0.00 6.18 7.69 4.58 28.44 3.76 5.75 0.00 0.00 0.00 50 ER8a ExonRegion 0 39.60 24.50 94.88 52.18 20.54 54.23 32.39 61.90 54.06 68.63 13.11 6.38 2.34 6.26 10.79 9.92 7.07 40.24 38.17 17.59 91.74 56.60 62.61 51 ER8b ExonRegion 0 0.00 1.02 1.23 0.00 0.00 0.00 0.00 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 0.00 0.00 0.00 0.00