Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RP4-777D9.1 Gene 0 2.86 2.96 0.84 2.82 2.85 2.09 2.92 0.55 1.57 1.03 0.89 2.61 5.40 2.08 2.59 0.95 1.53 1.77 1.47 3.78 2.11 1.26 2.61 2 443753 Transcript 0 0.53 1.01 0.19 0.69 0.21 0.51 0.51 0.22 0.19 0.41 0.14 0.56 1.27 0.83 0.62 0.42 0.18 0.34 0.24 1.17 0.49 0.08 1.11 3 433213 Transcript 0 0.26 0.13 0.11 1.64 0.50 0.80 0.59 0.00 0.80 0.43 0.00 0.00 0.72 0.00 0.15 0.00 0.21 0.12 0.00 0.93 0.14 0.00 0.73 4 ER1a ExonRegion 0 0.00 1.95 0.00 0.71 0.00 0.00 0.00 0.00 0.00 0.00 0.93 0.00 0.00 0.97 0.00 0.00 0.00 1.77 0.00 0.51 0.00 0.00 2.94 5 ER1b ExonRegion 0 0.00 2.22 0.78 1.61 2.45 0.98 1.72 1.11 0.00 0.00 1.57 1.54 6.68 0.50 0.12 1.31 1.43 3.66 1.38 1.79 0.00 0.00 1.92 6 E1_Da NovelBoundary 0 0.00 3.03 0.00 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.82 2.35 0.00 4.36 4.77 4.35 0.00 3.26 8.46 0.00 4.18 7 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 Ix Intron 0 12.73 19.65 9.61 19.41 14.65 20.28 7.53 4.42 7.71 7.52 4.15 5.33 6.34 3.90 1.69 2.87 2.13 3.66 2.74 11.42 3.31 16.33 8.83 9 Ix_AR1 ActiveIntronRegion 0 12.78 19.73 9.65 19.49 14.71 20.37 7.57 4.44 7.74 7.56 4.17 5.35 6.37 3.91 1.69 2.88 2.14 3.67 2.75 11.47 3.33 16.40 8.86 10 E2_Aa NovelBoundary 0 17.41 23.09 5.53 19.98 20.88 2.38 0.00 2.26 6.31 1.61 4.74 7.65 21.91 9.71 10.75 0.00 0.00 9.04 4.80 11.44 0.00 11.57 16.82 11 ER2a ExonRegion 0 11.57 13.94 4.11 4.60 18.13 3.98 4.22 1.17 6.66 3.11 6.06 13.92 7.41 2.96 4.38 2.68 6.01 10.81 2.90 12.54 13.01 11.38 8.02 12 E2_Da NovelBoundary 0 13.19 21.90 22.86 15.78 0.00 14.99 17.58 8.26 6.05 4.30 5.05 6.15 6.66 0.00 0.00 18.11 7.67 12.35 4.80 5.75 14.15 14.57 19.72 13 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 E2a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 Ix Intron 0 6.49 10.92 8.04 11.29 12.31 16.52 6.09 4.94 6.35 4.59 3.71 3.71 7.88 4.30 4.32 2.28 5.06 6.69 1.83 7.75 16.04 11.19 10.70 16 Ix_AR1 ActiveIntronRegion 0 6.35 10.34 6.06 11.66 9.93 19.25 6.85 4.73 6.71 4.39 2.40 3.44 6.43 3.75 5.53 1.78 4.23 7.31 0.96 7.73 17.40 11.25 10.97 17 Ix_SR1 SilentIntronRegion 0 6.87 12.16 11.80 10.86 16.88 11.92 4.86 5.42 5.83 5.05 6.15 4.28 10.68 5.41 2.22 3.23 6.67 5.70 3.46 7.92 13.90 11.28 10.43 18 E3_Aa NovelBoundary 0 10.37 24.07 21.50 20.41 6.79 25.50 17.89 6.94 15.28 8.76 7.84 6.30 27.27 0.00 0.00 4.36 16.46 15.92 0.00 22.75 9.27 14.63 7.17 19 ER3a ExonRegion 0 1.89 3.53 0.11 0.05 0.00 3.28 0.09 0.00 0.09 0.00 0.00 0.00 3.46 4.79 0.00 2.66 0.00 0.03 0.00 5.82 2.01 0.00 7.68 20 E3_Da NovelBoundary 0 23.56 21.05 19.04 59.87 15.37 35.32 6.36 12.53 9.66 16.39 15.48 12.30 13.47 2.47 0.00 7.69 13.74 12.85 4.24 9.40 22.61 6.00 12.72 21 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 Ix Intron 0 6.85 13.16 7.52 17.47 10.05 10.25 9.57 3.66 6.76 6.64 3.98 9.79 14.19 4.70 3.39 5.61 5.71 14.89 4.90 15.33 11.50 12.14 13.96 23 Ix_SR5 SilentIntronRegion 0 7.15 19.91 9.98 20.49 9.04 10.03 5.66 3.84 6.22 7.05 4.52 3.91 6.21 5.18 2.14 6.65 5.74 21.69 6.02 16.92 17.85 15.74 14.30 24 Ix_AR8 ActiveIntronRegion 0 6.55 18.74 10.20 26.51 14.58 15.18 11.58 4.33 10.77 8.74 4.68 11.94 21.12 5.81 5.96 7.60 6.44 16.82 6.86 18.18 11.27 16.12 14.03 25 Ix_SR4 SilentIntronRegion 0 4.28 12.31 10.83 19.84 11.64 10.26 14.59 4.77 6.82 5.23 5.59 20.15 22.74 6.99 4.54 4.69 4.89 6.67 1.26 19.33 5.10 8.89 11.58 26 Ix_AR7 ActiveIntronRegion 0 6.35 0.00 1.23 4.09 8.03 5.50 6.62 1.73 2.26 1.15 0.00 5.77 17.98 8.12 5.80 0.00 3.30 5.54 0.00 4.61 11.02 4.17 0.00 27 Ix_AR6 ActiveIntronRegion 0 6.35 0.34 1.23 10.45 10.41 5.50 8.39 2.11 2.47 1.15 1.61 14.43 20.32 9.47 5.80 2.97 6.60 6.98 0.00 7.80 11.39 5.09 1.96 28 Ix_AR5 ActiveIntronRegion 0 9.27 9.04 4.91 16.76 8.71 11.15 12.54 1.21 5.58 9.60 4.74 15.53 19.06 7.52 3.86 7.85 6.80 13.25 7.47 10.86 13.81 13.01 16.64 29 Ix_SR3 SilentIntronRegion 0 6.68 8.61 13.91 18.12 7.47 7.41 12.05 4.31 8.02 9.61 10.52 20.30 14.68 6.18 4.33 8.84 1.89 23.30 9.56 16.99 21.78 11.20 15.75 30 Ix_AR4 ActiveIntronRegion 0 13.40 12.87 5.76 16.12 13.33 11.29 13.07 3.92 11.35 8.79 3.09 14.07 23.75 5.25 2.35 7.93 2.30 12.77 7.41 13.24 16.39 13.80 17.80 31 Ix_AR3 ActiveIntronRegion 0 7.04 7.85 5.48 8.45 9.55 5.28 8.02 4.07 3.18 1.35 1.75 4.41 15.10 3.20 2.11 6.28 3.44 8.31 4.60 9.63 10.39 8.46 11.68 32 Ix_SR2 SilentIntronRegion 0 6.20 9.23 5.36 13.54 8.59 9.27 9.37 3.25 5.16 5.48 3.08 9.02 11.72 2.82 2.95 3.74 5.90 13.58 3.08 14.55 8.18 8.88 14.26 33 Ix_AR2 ActiveIntronRegion 0 2.12 4.07 2.45 10.90 7.69 5.50 5.96 8.64 7.41 12.90 2.42 6.49 22.86 1.02 2.90 0.00 9.90 10.86 1.19 13.83 7.71 14.06 9.91 34 Ix_SR1 SilentIntronRegion 0 6.53 5.52 2.98 9.31 7.34 4.25 7.60 5.61 7.80 7.23 3.51 6.02 13.01 4.40 2.88 2.01 10.25 11.50 7.53 10.91 6.95 15.41 9.90 35 ER4a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 5.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.50 0.00 0.00 0.20 36 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 E4a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 ER5a ExonRegion 0 0.79 0.38 0.34 4.93 1.50 2.40 1.77 0.00 2.41 1.28 0.00 0.00 2.16 0.00 0.45 0.00 0.62 0.35 0.00 2.80 0.41 0.00 2.19 39 ER6a ExonRegion 0 0.00 0.00 0.00 0.29 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41 ER7a ExonRegion 0 0.00 0.88 1.55 3.40 0.00 0.00 0.56 2.19 0.78 2.22 0.00 1.52 0.00 0.00 0.73 1.26 0.00 1.17 0.00 2.77 1.87 0.00 0.00 42 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 ER8a ExonRegion 0 0.00 2.54 0.00 1.26 0.00 0.00 0.83 0.00 0.00 2.10 0.00 2.24 2.43 0.00 1.50 0.00 0.00 0.00 0.00 1.26 0.00 0.00 0.00 44 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45 ER9a ExonRegion 0 4.50 3.19 0.67 2.63 2.47 2.88 4.65 0.48 1.36 0.63 0.71 2.96 9.30 4.15 5.22 1.10 2.13 1.10 2.94 3.73 2.04 0.96 2.71