Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 UBOX5 Gene 0 21.62 23.36 26.08 31.68 22.32 28.23 23.00 25.70 24.01 53.79 20.78 17.00 14.21 28.96 32.94 39.06 30.59 43.32 36.69 27.55 30.90 18.12 20.48 2 217173 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 348031 Transcript 0 13.63 11.58 1.21 3.90 7.89 8.12 5.87 15.85 1.42 23.58 4.79 6.00 11.69 12.89 20.15 12.30 22.25 10.78 21.74 5.88 14.33 2.76 0.00 4 449731 Transcript 0 0.00 0.66 1.40 1.27 1.28 0.00 0.21 0.80 0.29 0.00 0.61 2.21 1.74 0.00 1.76 2.33 0.52 1.17 2.53 1.70 0.00 0.00 3.25 5 440298 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 ER1a ExonRegion 0 0.67 3.90 1.18 0.77 4.24 0.65 4.03 0.76 2.42 1.49 2.15 4.94 3.68 3.11 9.52 4.91 3.47 2.36 6.58 3.57 1.89 2.32 6.63 7 E1_Ab KnownBoundary 0 0.00 5.39 0.00 1.76 0.00 2.33 4.50 2.34 5.76 0.00 0.00 0.00 0.00 2.59 0.00 3.76 8.32 4.35 7.72 2.94 3.15 0.00 3.76 8 ER1b ExonRegion 0 31.28 37.50 3.62 9.04 4.44 42.13 37.07 10.50 11.33 17.29 5.33 0.00 0.00 10.30 21.79 28.71 34.14 5.41 10.95 36.95 21.50 13.31 4.66 9 E1_Ac KnownBoundary 1 198.92 282.52 12.68 50.81 51.36 375.81 190.56 47.36 42.48 86.31 192.84 6.15 21.75 156.51 146.24 179.18 235.34 108.57 51.39 123.36 86.92 75.19 43.88 10 ER1c ExonRegion 0 25.49 45.80 4.83 11.18 7.25 49.30 39.34 8.17 10.85 30.37 7.98 9.79 0.07 20.31 14.80 44.93 39.61 7.52 13.30 31.64 16.26 16.73 18.94 11 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 E1a_E3a KnownJunction 0 6.52 6.12 3.52 7.16 0.00 5.22 8.66 7.56 8.51 25.36 2.16 12.15 0.00 2.47 0.00 7.95 11.97 7.25 4.80 9.78 2.66 0.00 7.85 13 Ix_AR2 ActiveIntronRegion 0 2.19 4.12 8.67 8.42 5.27 2.74 10.25 5.82 6.19 9.50 2.01 1.46 8.86 2.23 5.97 10.22 12.43 20.42 9.68 9.45 3.58 0.80 7.80 14 E2_Aa NovelBoundary 0 12.67 3.35 5.06 15.65 16.21 2.90 4.50 4.39 12.88 9.40 2.58 6.00 6.66 2.12 13.97 12.56 4.77 9.20 8.38 8.25 0.00 0.00 4.27 15 ER2a ExonRegion 0 0.00 1.98 4.20 3.80 3.83 0.00 0.63 2.41 0.88 0.00 1.84 6.64 5.22 0.00 5.29 7.00 1.57 3.52 7.59 5.11 0.00 0.00 9.74 16 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 Ix_SR2 SilentIntronRegion 0 6.07 2.12 2.24 3.53 5.29 5.58 5.73 6.91 3.36 6.98 0.00 0.00 16.62 1.41 2.90 2.00 5.24 1.29 1.66 7.17 2.01 1.68 2.81 18 Ix_AR1 ActiveIntronRegion 0 2.63 5.69 6.01 7.87 2.77 2.17 4.49 16.45 6.24 7.99 0.89 14.11 3.65 0.06 6.39 3.91 5.62 2.46 4.19 8.90 0.37 0.54 4.35 19 Ix_AR3 ActiveIntronRegion 0 11.03 9.43 9.89 16.10 7.88 3.98 9.94 10.40 13.29 12.03 3.26 14.58 3.43 2.71 13.39 12.65 7.87 19.89 10.08 9.60 5.70 4.89 6.07 20 Ix_AR1 ActiveIntronRegion 0 14.29 8.30 1.91 2.04 0.15 0.61 4.74 1.73 1.96 7.07 0.00 0.00 4.69 0.99 4.11 0.91 2.57 1.69 0.00 6.97 0.86 0.98 2.20 21 Ix Intron 0 11.64 7.87 5.93 10.25 13.17 7.36 8.65 7.19 5.98 9.12 0.64 4.98 5.80 1.43 5.34 6.45 3.96 6.14 6.85 8.71 2.32 1.94 5.22 22 Ix_SR1 SilentIntronRegion 0 11.65 7.87 5.93 10.26 13.18 7.36 8.66 7.20 5.98 9.13 0.64 4.99 5.80 1.43 5.34 6.46 3.96 6.14 6.86 8.72 2.33 1.94 5.23 23 Ix_AR2 ActiveIntronRegion 0 36.33 11.46 6.87 7.30 13.09 2.86 11.73 8.17 8.13 10.47 0.63 3.78 5.02 2.49 3.58 0.53 6.29 2.98 3.47 9.69 3.75 0.00 3.93 24 Ix_AR1 ActiveIntronRegion 0 17.27 12.54 3.08 8.58 11.16 2.21 8.91 9.69 5.63 11.63 0.78 10.19 5.81 1.61 4.34 6.53 4.46 2.83 4.11 7.30 0.81 0.84 3.08 25 ER3a ExonRegion 0 16.11 10.25 10.85 24.68 7.46 4.23 7.48 23.43 22.53 59.71 39.51 23.88 10.12 20.17 25.29 28.06 56.05 16.77 30.01 31.09 44.77 18.93 16.41 26 E3a_E4a KnownJunction 0 17.48 13.16 24.36 64.53 11.12 14.08 3.36 31.67 35.99 98.07 37.90 43.51 20.13 62.10 76.15 62.97 57.60 49.04 90.26 57.65 23.10 43.05 24.67 27 ER4a ExonRegion 1 20.24 39.43 27.10 53.68 46.72 57.96 35.99 33.15 37.70 92.62 40.38 69.05 30.14 49.51 45.75 73.71 51.20 69.20 53.41 46.93 32.11 29.77 32.30 28 E4_Da KnownBoundary 1 84.09 61.50 45.27 57.14 24.62 7.50 31.53 29.04 61.46 113.28 64.02 112.69 27.11 81.17 47.59 94.33 75.74 90.74 76.61 54.07 56.77 28.60 36.62 29 ER4b ExonRegion 0 25.59 31.48 35.72 43.80 26.13 38.05 23.55 40.60 38.12 93.70 45.48 28.77 26.04 60.73 55.51 73.24 57.07 77.79 62.54 39.93 54.22 29.30 26.74 30 E4_Db NovelBoundary 0 2.96 9.14 19.04 10.85 0.00 8.12 14.22 0.00 4.72 16.98 0.00 6.00 0.00 0.00 15.20 3.76 9.44 33.37 0.00 13.49 5.13 6.25 7.85 31 E4b_E5a KnownJunction 0 3.04 42.10 24.25 30.63 44.23 17.26 16.52 19.06 24.94 70.22 25.85 6.30 20.29 33.85 24.11 44.18 37.96 51.57 47.72 18.34 33.42 12.55 20.74 32 E4b_E6a KnownJunction 0 13.63 11.58 1.21 3.90 7.89 8.12 5.87 15.85 1.42 23.58 4.79 6.00 11.69 12.89 20.15 12.30 22.25 10.78 21.74 5.88 14.33 2.76 0.00 33 Ix_AR1 ActiveIntronRegion 0 4.74 1.50 4.16 9.03 1.00 1.99 2.83 9.80 6.67 17.51 2.22 4.11 0.00 2.69 5.34 11.06 4.92 4.79 6.72 8.71 3.43 2.17 3.02 34 E5_Aa NovelBoundary 0 13.34 18.68 13.13 23.21 10.95 10.39 7.33 11.42 11.31 32.10 12.69 0.00 0.00 8.89 9.27 13.67 21.88 18.86 6.96 12.85 20.70 12.31 3.33 35 ER5a ExonRegion 0 16.31 19.51 22.21 33.01 20.98 24.07 12.56 28.44 25.59 59.67 29.90 8.47 20.24 33.88 28.85 47.83 39.04 52.15 38.19 24.68 40.44 14.52 20.85 36 E5_Da NovelBoundary 0 7.11 5.99 3.19 10.65 11.88 5.79 0.00 5.87 4.11 11.20 0.00 0.00 0.00 2.47 14.09 8.72 8.04 17.99 12.71 10.87 11.49 2.57 11.44 37 E5a_E6a KnownJunction 0 9.11 6.64 16.47 5.66 11.04 10.05 7.91 18.81 15.57 46.28 27.27 0.00 6.82 22.07 35.48 15.12 25.15 40.17 53.18 6.46 22.43 2.76 12.72 38 Ix Intron 0 9.35 10.44 8.30 13.95 7.62 4.68 10.44 8.26 8.31 13.14 1.39 2.57 5.47 2.79 4.87 7.78 5.62 9.26 10.21 11.83 8.43 5.25 7.40 39 Ix_AR1 ActiveIntronRegion 0 3.98 3.33 8.71 6.51 4.48 4.61 6.21 5.28 8.35 9.86 1.77 0.00 1.77 2.29 4.97 3.95 10.32 14.53 2.91 10.83 8.06 3.51 6.37 40 Ix_SR1 SilentIntronRegion 0 10.25 11.64 8.24 15.20 8.15 4.69 11.15 8.76 8.31 13.70 1.33 3.01 6.09 2.87 4.86 8.42 4.83 8.39 11.44 12.01 8.50 5.54 7.57 41 Ix Intron 0 6.02 5.08 7.73 13.95 5.20 6.62 7.62 7.69 6.51 15.89 1.07 0.74 5.13 2.77 5.39 6.39 5.73 12.43 8.18 9.30 7.80 3.76 8.35 42 Ix_SR1 SilentIntronRegion 0 6.03 5.09 7.74 13.97 5.21 6.63 7.64 7.70 6.52 15.91 1.07 0.74 5.14 2.77 5.40 6.40 5.73 12.45 8.19 9.31 7.81 3.76 8.37 43 E6_Aa NovelBoundary 0 24.23 3.35 8.10 2.06 15.70 2.44 3.71 9.41 8.07 11.90 0.00 0.00 0.00 4.59 5.19 8.72 0.00 5.84 8.94 3.00 5.99 14.33 0.00 44 ER6a ExonRegion 0 16.73 13.52 34.64 26.78 11.89 19.41 13.51 23.46 21.29 59.24 19.44 7.67 10.23 37.14 40.71 36.96 22.66 44.93 38.04 19.02 34.96 16.99 23.16 45 E6_Da KnownBoundary 0 16.82 5.59 31.70 28.13 7.64 2.90 16.83 8.21 15.48 35.27 5.00 0.00 6.82 16.25 19.66 16.32 7.57 24.17 11.48 21.67 21.13 3.12 3.41 46 ER6b ExonRegion 0 26.32 25.20 25.60 32.91 27.03 29.71 29.54 24.40 21.94 40.36 10.31 12.51 10.81 14.88 24.62 26.49 21.90 34.39 29.70 27.18 23.53 15.71 18.57