Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C20orf196 Gene 0 39.19 14.81 19.04 35.30 23.73 28.03 15.95 20.31 11.80 23.55 59.26 21.20 15.77 48.87 69.00 52.29 49.07 15.28 20.72 10.39 5.87 6.74 10.56 2 378979 Transcript 0 16.62 1.31 4.25 5.51 13.16 1.38 4.36 5.93 3.25 6.13 55.03 27.85 17.84 33.96 43.17 26.84 33.44 4.41 3.97 4.93 1.11 3.01 0.94 3 303142 Transcript 0 35.46 16.39 27.03 49.51 23.19 30.53 12.03 21.15 15.37 32.31 42.70 9.24 12.53 55.02 65.69 38.82 35.92 18.44 19.83 9.40 5.11 6.74 8.86 4 378971 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 445603 Transcript 0 13.20 12.28 0.03 1.19 6.84 5.44 18.81 0.00 0.85 0.61 4.66 4.20 7.49 3.09 4.44 15.83 12.14 3.16 17.92 13.57 5.59 2.64 16.37 6 442185 Transcript 0 3.38 0.76 0.45 6.81 2.82 0.46 1.13 4.59 1.23 0.42 5.79 1.33 1.48 5.34 13.92 5.75 12.33 0.00 3.15 0.79 0.26 0.00 0.36 7 ER1a ExonRegion 0 0.00 0.00 0.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.93 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 0.00 0.00 0.00 0.00 8 ER1b ExonRegion 0 0.00 0.00 1.23 0.00 0.00 0.92 0.33 0.00 0.00 0.29 2.42 0.00 0.00 0.00 2.18 0.00 3.30 0.00 0.00 0.00 0.00 0.00 0.00 9 ER1c ExonRegion 1 141.28 30.39 11.47 22.94 39.54 82.67 34.28 11.23 9.09 16.31 88.32 1.56 3.78 44.26 158.76 94.70 103.52 3.95 24.78 9.34 6.61 10.30 12.32 10 E1_Ad KnownBoundary 1 474.31 94.39 27.08 65.89 177.00 220.84 93.14 29.24 23.90 39.25 242.54 6.30 6.82 105.66 345.51 299.49 257.13 27.53 69.27 24.67 18.10 26.70 32.78 11 ER1d ExonRegion 1 241.15 48.81 20.75 40.89 82.61 158.85 60.74 22.47 14.82 27.24 149.32 4.33 14.07 81.51 212.88 174.61 170.20 9.24 44.60 14.89 11.02 16.67 23.49 12 E1a_E2a KnownJunction 0 0.00 0.00 0.00 4.59 3.74 0.00 2.08 5.38 0.00 0.00 2.00 0.00 0.00 2.47 13.60 0.00 7.48 0.00 0.00 0.00 0.00 0.00 0.00 13 E1a_E3a KnownJunction 0 0.00 0.00 0.00 1.66 0.00 2.10 0.00 0.00 1.50 0.00 5.26 0.00 6.33 0.00 0.00 0.00 0.00 1.58 0.00 0.00 0.00 0.00 0.00 14 E1a_E4a KnownJunction 0 66.68 9.34 23.51 53.81 36.76 44.58 20.58 23.95 13.14 24.85 26.38 7.65 19.48 29.37 59.95 35.03 32.82 7.42 15.72 8.76 5.99 0.00 7.68 15 ER1e ExonRegion 1 151.25 28.55 23.05 44.87 66.69 106.92 50.11 29.12 15.58 30.04 94.79 7.33 23.63 52.72 63.72 119.91 104.87 12.37 34.79 13.99 10.68 9.78 23.72 16 E2_Aa NovelBoundary 1 396.74 230.49 81.69 79.58 235.99 142.19 266.04 92.66 73.81 64.79 21.22 53.72 30.03 35.96 65.39 137.74 135.76 78.02 131.11 111.41 65.85 92.65 103.03 17 ER2a ExonRegion 0 10.15 2.27 1.34 7.58 4.73 1.37 1.32 6.09 2.25 1.27 10.12 3.98 4.45 6.20 13.57 5.53 12.02 0.00 1.93 2.38 0.79 0.00 1.09 18 E2a_E4a KnownJunction 0 0.00 0.00 0.00 8.26 0.00 0.00 0.00 2.30 1.45 0.00 5.26 0.00 0.00 7.36 14.59 11.71 17.48 0.00 7.53 0.00 0.00 0.00 0.00 19 E3_Aa NovelBoundary 0 31.64 42.95 129.62 40.62 33.28 101.02 70.62 54.63 47.60 60.04 4.26 7.65 0.00 7.24 15.33 3.59 8.23 54.22 35.30 45.89 8.53 23.76 11.44 20 ER3a ExonRegion 0 39.59 36.85 0.09 1.92 20.52 14.23 56.42 0.00 1.03 1.83 8.71 12.61 16.13 9.28 13.33 47.49 36.42 7.90 53.77 40.71 16.76 7.92 49.12 21 E3_Da NovelBoundary 0 16.74 8.42 3.90 7.89 3.57 4.71 9.49 6.16 4.92 5.80 1.95 12.90 6.66 2.35 12.98 8.03 11.50 8.87 20.14 5.69 5.81 0.00 10.67 22 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 ER4a ExonRegion 0 32.59 12.51 33.35 52.58 29.55 13.85 15.48 37.51 23.56 38.92 149.51 24.34 18.84 90.75 139.15 147.56 125.76 31.48 42.07 13.69 11.72 15.63 15.64 24 E4_Da NovelBoundary 1 0.00 0.00 1.51 12.82 15.70 0.00 1.81 10.43 4.46 13.59 4.42 7.05 27.43 0.00 15.20 19.91 12.44 19.11 4.80 15.02 5.00 0.00 4.35 25 E4a_E5a KnownJunction 0 0.00 0.00 5.35 3.26 20.20 0.00 2.25 7.06 4.02 8.46 80.70 25.21 20.45 55.68 52.41 36.83 45.91 7.92 4.33 8.50 2.53 5.88 0.00 26 E4a_E6a KnownJunction 0 3.63 14.27 31.08 52.57 16.47 15.62 16.78 40.42 31.60 35.35 25.59 18.01 6.33 58.63 45.61 104.84 43.95 43.15 50.26 6.52 18.78 16.66 14.68 27 I4 Intron 0 2.45 0.00 0.00 3.53 18.61 14.88 12.28 1.49 1.07 1.98 2.24 6.20 6.40 2.99 5.24 18.95 9.57 1.60 1.85 4.93 0.00 0.00 1.70 28 I4_SR1 SilentIntronRegion 0 2.54 0.00 0.00 3.61 19.17 15.40 12.69 1.55 1.10 2.05 2.32 6.42 6.62 3.10 5.43 19.62 9.90 1.63 1.91 5.08 0.00 0.00 1.76 29 E5_Aa NovelBoundary 0 3.78 3.35 1.36 15.78 20.03 5.79 14.13 11.38 2.81 16.65 7.00 17.71 6.82 4.41 4.45 16.75 3.83 0.00 0.00 12.02 0.00 0.00 0.00 30 ER5a ExonRegion 0 49.85 3.93 7.14 13.26 19.29 4.14 10.82 10.73 5.72 9.93 82.44 58.34 33.07 46.21 77.09 43.70 53.75 5.31 7.57 6.28 0.79 3.14 2.83 31 E5_Da NovelBoundary 0 14.37 5.85 8.93 13.62 6.96 0.00 5.74 6.78 1.22 4.67 4.84 7.35 14.61 4.41 9.64 0.00 17.48 1.99 4.80 5.94 0.00 2.88 4.27 32 I5_SR2 SilentIntronRegion 0 8.27 4.63 3.34 11.50 10.27 2.87 6.49 7.59 3.31 6.65 2.90 7.47 13.04 3.73 11.96 15.91 9.49 4.92 3.60 7.17 0.94 0.32 3.95 33 I5_AR3 ActiveIntronRegion 1 10.97 5.50 5.03 13.27 11.41 3.57 8.72 6.54 3.24 7.76 0.96 13.75 33.73 3.03 10.58 9.79 6.86 2.10 3.45 6.53 0.08 0.00 2.41 34 I5_SR3 SilentIntronRegion 0 10.21 5.29 4.08 13.04 11.25 2.62 6.92 5.82 3.29 5.41 2.37 8.48 16.02 2.80 8.30 11.79 8.32 3.51 2.71 5.75 0.47 0.68 3.47 35 I5_AR4 ActiveIntronRegion 0 10.20 3.73 4.90 19.85 4.99 4.12 6.69 3.97 5.96 6.38 5.09 12.50 21.91 4.90 13.29 17.03 15.13 11.28 3.11 5.37 0.92 1.81 5.30 36 I5_SR4 SilentIntronRegion 0 12.29 5.17 3.45 12.64 11.08 4.07 6.81 7.90 3.67 5.83 3.38 8.25 15.28 4.96 9.88 10.22 7.79 3.24 2.69 5.82 0.42 0.72 2.07 37 I5_AR5 ActiveIntronRegion 0 18.01 5.17 1.61 8.58 5.09 1.70 2.75 5.27 2.75 3.79 2.79 4.21 12.32 1.30 3.69 9.79 7.85 0.44 2.56 5.12 0.59 0.00 1.42 38 I5_AR6 ActiveIntronRegion 0 6.96 1.04 0.75 5.52 5.90 0.55 7.44 0.98 2.44 3.02 1.19 11.56 26.31 0.67 9.15 11.13 4.70 2.56 2.88 2.96 0.24 0.00 3.30 39 E6_Aa NovelBoundary 0 25.04 12.89 4.73 14.32 16.04 2.33 0.00 2.09 3.59 7.98 2.68 0.00 0.00 7.30 6.18 0.00 4.21 0.00 0.00 3.07 0.00 0.00 0.00 40 ER6a ExonRegion 0 39.36 26.59 26.92 53.47 47.34 90.08 26.48 37.96 14.88 35.45 45.80 21.58 12.35 54.98 54.61 46.45 31.39 24.17 24.67 12.69 10.11 7.69 12.81 41 E6_Da KnownBoundary 0 64.46 40.78 41.04 74.68 18.76 37.14 11.53 36.51 12.50 67.61 59.17 5.55 13.31 91.18 64.28 52.89 42.26 22.05 9.41 24.54 5.62 11.08 7.60 42 ER6b ExonRegion 0 41.82 26.41 35.37 51.56 16.70 28.42 16.25 39.62 11.08 43.76 52.10 17.45 7.04 72.25 59.26 47.10 32.41 17.19 20.56 11.80 6.31 7.20 8.63 43 E6_Db KnownBoundary 0 49.27 23.35 27.67 33.06 21.99 11.36 32.19 34.71 10.24 22.00 48.38 43.06 14.77 60.69 65.39 69.30 44.41 10.74 39.06 6.39 8.59 12.49 12.04 44 E6_Dc KnownBoundary 0 47.19 20.79 15.97 40.12 15.70 55.03 17.62 16.18 10.21 30.97 16.53 12.00 36.20 77.70 76.27 20.42 40.11 11.69 18.07 11.57 0.00 6.12 11.01 45 ER6c ExonRegion 0 31.25 16.74 23.40 40.21 15.25 26.96 24.05 26.68 13.79 31.12 34.79 28.00 28.14 77.42 75.05 44.88 44.89 12.20 21.87 8.94 5.73 9.24 11.26 46 ER6d ExonRegion 0 52.72 22.12 32.70 56.61 31.34 44.14 18.24 25.78 17.94 40.60 49.17 10.16 16.40 70.31 75.52 47.96 41.30 18.44 23.66 12.19 6.15 7.83 10.73 47 ER6e ExonRegion 1 38.10 19.40 22.01 53.10 26.65 48.53 13.29 27.06 22.71 44.60 61.33 5.16 9.56 63.40 96.30 45.04 37.83 21.39 24.75 10.07 7.03 10.42 12.54 48 ER6f ExonRegion 0 18.20 10.66 21.36 42.41 15.03 16.93 5.83 16.51 12.81 24.02 36.23 8.33 8.67 39.72 55.87 29.69 30.54 18.45 16.00 6.61 4.08 5.66 6.99