Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CSRP2BP Gene 0 51.95 87.31 51.70 58.44 49.65 69.75 42.05 45.85 42.07 65.92 52.80 57.34 39.84 83.55 67.27 69.53 79.42 81.36 81.60 68.58 38.17 33.93 36.91 2 278816 Transcript 0 24.23 14.81 7.37 4.03 12.29 38.83 18.95 0.91 6.78 11.83 20.22 0.00 2.66 21.86 33.68 31.69 43.94 9.09 23.72 13.94 18.11 13.15 20.56 3 377681 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 464792 Transcript 0 2.13 1.76 5.24 1.78 2.59 12.93 0.96 0.00 0.62 1.15 3.50 3.23 3.41 7.65 17.68 1.70 7.38 0.38 5.00 4.44 4.23 0.60 0.00 5 489422 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 484001 Transcript 0 0.00 0.00 0.00 1.40 0.00 0.00 0.00 0.00 0.00 3.01 0.00 0.00 0.00 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 492286 Transcript 0 0.25 3.88 2.76 2.15 0.60 0.05 3.99 0.09 1.88 1.22 3.57 0.00 0.00 2.31 3.24 1.29 2.31 3.27 3.34 0.00 0.04 0.02 1.22 8 435364 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 416635 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 434922 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 489634 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 ER1a ExonRegion 0 24.23 14.81 7.37 4.03 12.29 38.83 18.95 0.91 6.78 11.83 20.22 0.00 2.66 21.86 33.68 31.69 43.94 9.09 23.72 13.94 18.11 13.15 20.56 13 E1_Ab KnownBoundary 0 65.27 45.12 22.71 18.51 15.03 77.17 38.38 6.98 15.77 20.25 33.64 0.00 0.00 30.14 67.12 86.73 120.06 32.13 61.93 35.86 50.97 17.64 51.56 14 ER1b ExonRegion 0 30.27 30.78 13.73 13.35 6.09 20.69 16.17 10.12 11.46 19.23 24.78 4.12 4.58 16.41 19.70 27.64 49.51 18.93 35.71 18.34 29.38 8.89 21.46 15 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 ER2a ExonRegion 0 1.21 3.52 0.10 0.00 1.53 5.25 0.15 0.00 0.00 0.98 2.37 0.00 0.00 0.77 2.35 3.41 2.41 0.77 5.48 0.00 0.00 1.19 0.00 17 E2_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 1.77 0.00 0.00 2.71 2.32 0.00 0.00 0.00 0.00 0.00 0.00 1.91 0.00 0.00 0.00 0.00 0.00 18 E2_Ac KnownBoundary 0 0.00 0.00 3.67 0.00 0.00 0.00 1.85 3.86 2.84 0.00 2.68 6.30 0.00 2.47 4.45 0.00 4.77 6.38 0.00 0.00 2.35 0.00 0.00 19 ER2b ExonRegion 0 0.00 0.00 2.45 0.00 0.00 0.35 1.84 1.45 0.00 0.00 3.99 4.33 0.00 1.78 1.12 0.00 6.60 1.91 0.00 0.00 0.57 0.00 0.00 20 ER2c ExonRegion 0 1.36 1.66 4.43 2.39 0.46 1.35 2.34 2.22 0.93 3.70 6.53 0.49 0.53 15.00 7.19 2.15 7.01 8.50 7.64 1.35 4.43 1.25 1.11 21 E2_Da KnownBoundary 0 3.04 6.05 3.73 1.56 3.82 2.90 2.21 0.00 1.19 4.62 9.74 0.00 6.82 24.25 10.26 4.10 4.77 15.09 23.72 2.68 8.40 6.18 3.50 22 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 ER2d ExonRegion 0 1.36 7.21 3.20 4.11 3.93 5.62 1.53 0.68 0.00 5.04 9.12 2.91 4.69 15.33 10.93 4.27 17.33 12.33 10.40 2.29 4.72 1.86 0.64 24 E2_Db KnownBoundary 0 0.00 0.00 5.03 3.00 0.00 5.28 1.99 2.22 0.00 1.40 4.42 18.91 6.49 17.60 13.35 0.00 4.21 4.64 4.33 5.62 2.66 2.76 0.00 25 E2b_E3a KnownJunction 0 0.00 0.00 0.00 1.40 0.00 0.00 0.00 0.00 0.00 3.01 0.00 0.00 0.00 4.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 26 ER2e ExonRegion 0 2.21 5.51 10.29 3.00 7.85 8.44 4.30 1.73 1.15 1.17 11.12 13.18 8.44 29.78 19.92 6.08 12.54 5.50 8.99 6.71 3.28 1.81 0.07 27 E2_Dc KnownBoundary 0 3.33 11.18 4.82 1.70 7.56 0.00 5.96 0.00 1.62 0.00 2.68 0.00 0.00 2.12 4.45 0.00 8.51 4.68 7.72 0.00 0.00 0.00 0.00 28 E2c_E3a KnownJunction 0 3.04 0.00 10.38 3.56 3.65 20.61 1.77 0.00 1.24 1.32 4.63 6.45 6.82 14.54 33.01 0.00 12.34 0.00 4.52 8.88 8.46 0.00 0.00 29 ER2f ExonRegion 0 0.49 4.47 3.74 2.23 1.20 0.09 7.99 0.17 2.02 0.76 4.93 0.00 0.00 2.14 6.48 2.58 4.62 4.10 6.69 0.00 0.07 0.03 2.45 30 E2d_E3a KnownJunction 0 0.00 3.29 1.77 2.06 0.00 0.00 0.00 0.00 1.74 1.67 2.21 0.00 0.00 2.47 0.00 0.00 0.00 2.45 0.00 0.00 0.00 0.00 0.00 31 ER3a ExonRegion 0 43.98 77.83 90.28 103.08 45.65 93.42 53.13 55.35 56.51 76.30 109.04 106.15 47.32 99.91 96.39 59.03 134.07 47.08 68.77 82.82 28.62 81.53 55.74 32 E3_Da KnownBoundary 0 82.68 160.76 104.82 155.42 62.31 126.23 96.98 75.82 61.60 117.12 163.46 216.37 99.99 104.48 136.47 73.66 138.38 49.74 87.16 103.03 22.55 163.62 79.64 33 ER3b ExonRegion 1 87.13 116.37 99.02 146.62 43.63 74.47 68.51 82.15 75.14 113.48 162.69 185.08 60.97 104.39 76.32 93.70 134.60 48.55 65.30 83.33 12.43 123.62 63.38 34 E3_Db KnownBoundary 0 89.79 99.06 68.39 103.08 38.79 71.32 69.03 58.28 66.12 80.02 121.72 140.90 47.40 79.93 93.83 109.12 139.78 38.55 43.86 68.52 13.90 71.03 22.37 35 ER3c ExonRegion 0 97.98 88.84 118.86 157.42 66.35 122.00 75.12 77.45 67.79 94.11 112.67 162.72 57.70 162.34 101.74 100.65 133.41 60.73 79.42 98.04 44.20 98.37 55.20 36 E3_Dc KnownBoundary 1 119.06 98.40 165.16 256.41 108.32 208.74 110.23 117.76 100.14 124.40 116.29 206.77 34.41 136.62 86.66 64.43 115.75 112.13 124.99 93.89 57.45 93.20 64.11 37 ER3d ExonRegion 0 79.40 101.36 103.77 143.53 84.44 104.53 77.89 71.50 65.34 92.92 112.46 149.23 52.53 127.99 126.02 112.81 136.17 96.68 119.99 88.31 65.13 78.54 90.96 38 E3_Ab KnownBoundary 0 70.75 128.40 90.59 123.03 68.08 91.08 95.57 71.43 77.29 92.32 125.45 97.53 46.59 150.86 122.50 115.70 114.63 132.98 128.66 93.06 79.69 79.36 103.20 39 ER3e ExonRegion 1 51.62 98.20 89.15 114.82 53.77 96.91 66.17 75.07 73.47 95.70 132.38 77.21 32.75 160.23 131.21 114.98 126.99 131.16 151.34 104.47 74.47 78.42 86.54 40 E3_Dd KnownBoundary 1 37.86 89.72 117.32 139.51 81.66 102.16 71.01 102.32 75.49 90.07 133.35 31.51 48.54 141.92 172.08 110.14 128.10 115.74 128.29 101.63 94.89 75.07 81.01 41 ER3f ExonRegion 0 56.58 94.40 75.93 93.09 58.42 100.27 65.45 63.95 56.87 86.85 125.12 49.69 48.36 133.61 119.50 112.94 119.79 104.13 147.09 97.49 79.21 71.65 65.94 42 E3_De NovelBoundary 1 26.75 15.33 50.89 57.83 19.52 19.48 31.89 30.03 26.74 46.42 47.49 12.00 6.82 40.38 47.10 4.27 43.20 5.72 4.24 11.06 19.40 60.56 15.96 43 E3e_E4b KnownJunction 0 28.89 74.99 15.61 31.63 52.89 23.23 36.61 35.04 42.56 74.49 58.75 32.71 38.15 111.43 61.19 89.12 87.33 98.29 74.73 84.75 50.84 28.84 28.85 44 I3_AR1 ActiveIntronRegion 1 24.27 19.45 32.01 48.63 15.35 19.55 17.90 21.96 16.19 20.30 13.46 20.40 13.79 17.45 37.49 8.52 11.49 3.78 15.01 9.78 6.77 37.13 6.62 45 ER4a ExonRegion 0 0.17 1.94 0.90 3.16 2.32 0.56 3.27 0.78 2.08 0.98 0.47 0.19 1.74 1.44 0.49 0.64 2.49 0.55 1.82 2.98 1.26 0.28 0.15 46 E4_Ab KnownBoundary 0 0.00 0.00 3.28 1.86 0.00 2.56 0.00 2.55 1.79 1.61 0.00 0.00 0.00 0.00 0.00 0.00 4.77 0.00 0.00 0.00 0.00 0.00 0.00 47 ER4b ExonRegion 0 24.88 85.91 32.73 37.61 30.20 56.68 33.35 39.43 42.99 64.07 71.30 50.60 34.06 91.02 60.39 88.31 101.77 95.07 104.01 101.39 48.61 24.17 34.29 48 E4a_E5a KnownJunction 1 15.48 68.47 30.78 35.29 48.30 53.32 35.86 35.53 32.87 64.76 31.64 76.07 67.04 57.63 40.05 74.00 90.88 91.82 99.67 69.22 31.07 40.05 45.24 49 ER5a ExonRegion 0 22.87 80.89 33.81 46.96 47.77 84.66 48.76 34.02 50.64 91.74 61.81 59.19 41.36 108.27 48.25 89.75 109.47 93.60 94.57 98.87 43.71 36.97 36.71 50 E5a_E6a KnownJunction 0 25.41 104.52 50.97 73.05 50.34 111.64 48.00 35.69 73.96 96.89 53.91 87.33 19.97 116.19 50.93 87.84 108.74 112.42 160.38 102.59 53.31 27.25 36.02 51 ER6a ExonRegion 0 31.24 110.10 42.67 50.10 41.37 83.02 32.63 41.27 42.43 74.04 49.57 56.28 35.38 99.27 48.33 83.38 108.17 107.70 96.63 72.38 45.07 35.15 41.48 52 E6a_E7a KnownJunction 0 37.93 68.74 42.16 38.69 51.61 62.46 29.46 38.73 19.36 15.96 24.69 42.01 25.32 66.98 29.67 49.05 96.03 26.70 4.52 28.44 26.63 14.14 24.16 53 E6a_E7b KnownJunction 0 3.04 36.70 17.92 14.42 7.47 22.71 9.98 23.49 18.72 51.44 21.53 23.56 0.00 47.56 29.30 28.62 27.49 54.43 118.87 48.07 13.84 13.96 7.68 54 ER7a ExonRegion 0 28.57 84.90 40.44 41.23 40.81 77.94 23.50 43.21 26.86 30.68 37.69 53.04 34.00 87.70 44.24 53.50 94.08 40.65 39.82 38.30 36.91 23.44 33.77 55 ER7b ExonRegion 0 33.25 105.10 57.37 58.26 53.85 110.30 42.70 51.26 51.15 74.96 52.39 79.72 50.18 103.90 55.95 108.85 121.47 150.72 123.28 83.19 67.74 39.83 58.03 56 E7a_E8a KnownJunction 1 32.30 59.33 41.19 40.99 59.68 87.56 38.82 45.43 37.27 59.96 19.58 87.33 47.07 99.18 49.08 75.45 62.74 100.77 95.72 71.78 37.44 14.82 44.22 57 ER8a ExonRegion 0 52.49 152.93 56.80 59.84 66.11 83.31 49.19 51.83 53.44 80.15 48.81 71.83 49.86 101.74 80.50 92.64 88.02 120.69 101.89 89.34 54.59 33.71 43.24 58 E8_Da NovelBoundary 0 0.00 9.08 1.83 2.06 0.00 12.95 0.00 7.52 0.00 3.25 4.84 0.00 19.97 0.00 9.02 3.85 0.00 6.22 4.71 3.26 0.00 0.00 0.00 59 E8a_E9a KnownJunction 0 165.51 298.30 86.28 104.15 83.28 90.35 66.20 77.30 86.28 118.17 86.86 60.62 106.97 94.24 49.69 136.29 116.41 162.41 205.28 127.90 73.89 51.56 35.00 60 ER9a ExonRegion 0 74.85 182.03 76.04 78.31 65.57 65.43 55.24 67.57 62.38 105.81 56.15 64.63 77.16 87.24 97.27 90.42 94.62 118.32 132.86 85.01 58.34 33.44 42.98 61 E9_Da NovelBoundary 0 7.33 2.89 2.93 3.33 3.65 0.00 3.58 15.69 8.25 4.08 2.47 0.00 13.31 9.89 4.45 8.12 12.81 6.72 4.80 5.69 3.15 0.00 0.00 62 E9a_E10a KnownJunction 1 229.00 452.22 92.37 115.17 136.93 187.79 95.70 87.61 52.92 122.33 82.28 95.58 140.58 143.15 214.85 152.78 121.55 206.98 318.03 137.42 83.21 41.76 67.78 63 E10_Aa NovelBoundary 0 24.45 3.35 5.77 2.06 7.81 36.34 6.45 9.82 6.16 8.03 5.05 0.00 6.01 15.25 13.72 8.46 13.56 11.28 9.41 8.82 8.90 2.94 12.89 64 ER10a ExonRegion 1 92.80 148.73 63.34 63.92 62.86 105.02 61.43 58.42 45.83 71.96 51.65 50.92 84.85 102.93 90.43 87.05 81.70 109.68 116.37 85.36 47.73 23.52 28.40 65 E10a_E11a KnownJunction 0 103.87 112.41 64.66 79.48 60.87 63.77 62.62 48.39 46.09 55.47 36.43 49.82 32.47 101.48 95.43 63.15 50.02 92.81 48.75 90.06 38.30 27.80 16.56 66 ER11a ExonRegion 0 84.10 92.21 74.93 83.59 82.67 79.92 61.25 56.15 51.19 89.05 54.49 45.09 55.15 109.22 88.18 78.19 85.96 110.43 89.52 97.06 32.88 29.68 37.58 67 E11a_E12a KnownJunction 1 74.24 116.49 123.83 138.48 62.73 85.06 47.08 42.84 49.13 117.84 43.64 12.15 73.53 109.19 80.60 71.35 92.38 146.83 89.04 104.06 37.87 33.13 21.26 68 I11 Intron 0 12.59 4.45 4.04 5.92 11.26 5.09 5.17 6.60 4.02 7.07 3.73 5.26 8.20 5.09 4.78 3.63 4.89 7.07 4.72 6.70 1.24 2.06 1.10 69 I11_AR1 ActiveIntronRegion 0 21.06 8.62 7.12 7.58 20.48 5.15 6.62 11.00 4.31 8.32 3.07 5.81 10.06 4.36 6.28 1.63 4.11 4.02 3.05 11.04 0.00 2.53 0.43 70 I11_SR2 SilentIntronRegion 0 21.50 5.55 6.99 7.37 8.23 5.84 6.80 7.63 5.69 8.69 4.81 5.34 12.34 5.70 6.48 5.99 3.16 9.79 9.54 7.43 1.90 1.68 3.17 71 E12_Aa NovelBoundary 0 28.82 3.09 21.02 14.68 15.53 0.00 12.41 13.92 4.89 3.33 2.37 6.15 0.00 4.94 4.45 0.00 9.44 21.35 0.00 3.13 0.00 0.00 0.00 72 ER12a ExonRegion 0 76.38 70.35 46.89 51.18 58.70 58.98 40.39 51.75 38.36 66.49 37.11 46.88 37.90 70.00 68.49 52.77 52.93 61.10 65.01 61.50 22.80 23.08 24.47 73 ER12b ExonRegion 0 0.00 1.76 2.12 0.00 0.00 0.12 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 1.11 0.00 0.00 0.00 0.00 0.00