Order	SeqName	SeqType	IsAE	NBL01_MYCN	NBL05_MYCN	NBL09_MYCN	NBL10_MYCN	NBL02	NBL03	NBL04	NBL06	NBL07	NBL08	NBL11_Rel2	NBL11_Rem1	NBL11_Rel1	NBL12_Rel_Left	NBL12_Rel_Right	NBL13_Rel_Left	NBL13_Rel_Right	NBL14_MYCN_Met	NBL14_MYCN_Pri	NBL15_MYCN_Rel1	SKP01	SKP02	SKP03
1	POLR3F	Gene	0	54.22	144.45	63.26	114.94	92.40	140.31	71.95	84.98	63.67	59.88	38.58	70.98	47.07	46.79	41.03	27.54	33.46	24.08	40.12	45.81	15.08	45.98	23.32
2	377603	Transcript	0	0.00	2.32	0.71	0.93	1.04	1.69	1.57	0.04	5.23	1.51	1.12	0.00	0.00	0.73	0.72	0.58	0.64	5.00	1.96	1.50	0.24	0.77	4.86
3	461589	Transcript	0	3.26	1.93	0.00	3.76	4.67	2.74	6.08	3.55	1.47	3.06	6.21	12.18	8.48	5.26	1.87	6.42	10.42	5.27	4.43	5.72	1.46	3.24	2.93
4	462997	Transcript	0	0.00	0.00	0.46	2.02	0.00	0.01	0.20	0.64	4.00	1.23	0.55	0.00	0.00	1.52	0.03	1.47	1.62	2.79	4.16	3.10	1.07	0.00	2.33
5	497333	Transcript	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
6	475192	Transcript	0	1.06	22.05	5.78	20.55	18.78	51.74	15.32	27.38	21.99	11.15	2.03	9.08	5.61	5.89	3.50	1.84	1.46	2.90	4.78	11.74	0.00	11.28	0.00
7	489753	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
8	ER1a	ExonRegion	0	0.00	2.32	0.71	0.93	1.04	1.69	1.57	0.04	5.23	1.51	1.12	0.00	0.00	0.73	0.72	0.58	0.64	5.00	1.96	1.50	0.24	0.77	4.86
9	E1_Ab	KnownBoundary	0	0.00	0.00	1.66	1.33	0.00	4.43	0.00	0.00	4.75	1.67	0.00	0.00	0.00	0.00	5.19	0.00	0.00	0.00	0.00	5.94	3.15	2.27	7.51
10	E1_Ac	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	1.85	2.14	2.86	0.00	0.00	0.00	0.00	2.35	0.00	4.19	0.00	0.00	4.71	3.00	0.00	0.00	0.00
11	ER1b	ExonRegion	0	0.00	2.03	0.00	3.63	0.00	8.25	1.32	1.73	3.71	2.29	0.00	0.00	0.00	2.44	2.90	0.00	0.00	5.54	9.56	6.38	2.20	3.82	5.87
12	ER1c	ExonRegion	0	13.58	29.49	6.50	13.33	19.18	119.35	31.48	11.76	10.09	8.32	10.90	0.00	0.00	16.56	7.41	22.54	16.32	25.66	41.06	25.89	18.12	24.42	34.75
13	E1_Ad	KnownBoundary	0	44.82	73.21	1.71	3.63	46.52	253.38	66.46	2.46	1.68	3.04	29.17	6.60	0.00	25.55	11.74	38.37	38.15	9.20	95.34	48.07	31.44	49.29	73.16
14	E1_Ae	KnownBoundary	0	35.49	60.98	27.38	41.05	69.35	255.08	81.88	42.39	34.90	19.77	9.21	6.45	0.00	32.02	19.41	59.73	38.80	71.76	34.26	21.73	36.88	26.45	53.44
15	ER1d	ExonRegion	0	32.12	74.05	18.24	26.70	56.66	292.98	81.07	26.74	25.79	15.04	20.47	0.00	0.00	45.38	28.33	61.54	49.51	60.87	70.64	42.18	43.94	50.86	77.56
16	ER1e	ExonRegion	0	5.77	30.42	12.98	20.98	23.99	81.08	27.53	28.32	28.18	15.62	17.30	23.45	1.68	18.91	9.82	16.10	23.41	35.31	16.91	23.12	23.40	15.19	18.55
17	E1_Da	KnownBoundary	0	0.00	0.00	0.00	0.00	0.00	0.00	2.21	0.00	4.72	1.02	0.00	0.00	0.00	3.00	0.00	0.00	0.00	4.31	3.95	6.52	0.00	0.00	0.00
18	E1a_E2a	KnownJunction	1	0.00	15.98	13.22	21.01	7.30	22.37	3.84	38.86	39.76	28.55	60.07	6.30	0.00	19.90	13.23	0.00	61.62	10.94	26.73	32.73	54.24	11.82	10.93
19	E1a_E3a	KnownJunction	0	0.00	0.00	0.00	1.60	0.00	0.00	0.00	0.00	1.10	1.05	0.00	6.15	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.45	0.00
20	ER1f	ExonRegion	0	0.00	0.00	0.92	4.05	0.00	0.02	0.40	1.28	3.51	2.46	1.11	0.00	0.00	3.04	0.06	2.94	3.24	5.58	3.53	2.93	2.14	0.00	1.17
21	E1b_E2a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.48	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.80	3.26	0.00	0.00	3.50
22	ER2a	ExonRegion	1	4.57	44.26	32.25	51.92	17.03	46.42	22.48	63.54	46.47	36.37	47.93	36.14	49.05	60.64	23.06	34.96	42.27	42.33	54.07	54.22	32.61	55.65	52.44
23	E2_Da	KnownBoundary	0	3.41	3.03	0.00	7.52	7.47	0.00	1.99	5.67	1.33	4.00	9.32	13.05	0.00	5.47	0.00	0.00	0.00	1.82	7.91	12.46	0.00	3.06	0.00
24	E2a_E3a	KnownJunction	0	5.63	65.19	37.25	56.94	30.65	98.75	21.42	46.50	46.99	51.06	48.12	30.61	21.10	26.08	10.01	16.41	17.77	37.64	17.13	49.86	31.26	28.66	24.33
25	ER2b	ExonRegion	0	3.26	1.93	0.00	3.76	4.67	2.74	6.08	3.55	1.47	3.06	6.21	12.18	8.48	5.26	1.87	6.42	10.42	5.27	4.43	5.72	1.46	3.24	2.93
26	E2_Db	NovelBoundary	0	3.56	0.00	1.69	1.90	12.14	2.56	19.03	4.15	6.22	1.67	4.63	5.40	12.34	9.24	0.00	8.72	13.93	7.67	0.00	11.63	2.78	0.00	3.67
27	I2	Intron	0	2.79	4.39	2.79	6.33	5.54	6.71	7.78	4.01	3.59	3.95	6.66	13.81	19.74	9.53	2.58	9.00	7.72	7.69	8.12	9.31	3.50	4.31	3.26
28	I2_SR1	SilentIntronRegion	0	2.93	3.89	3.83	7.29	6.47	7.15	8.79	4.30	5.75	5.80	8.75	16.76	23.13	11.72	2.83	12.23	9.60	9.52	12.07	11.14	4.15	5.28	2.72
29	I2_AR1	ActiveIntronRegion	0	4.73	8.57	2.08	9.09	5.58	6.72	9.46	4.17	3.51	4.32	7.64	17.14	32.61	10.99	2.92	13.05	10.29	12.62	7.22	14.36	5.50	4.75	7.26
30	E3_Aa	NovelBoundary	0	32.67	3.35	4.20	10.69	0.00	11.36	17.58	18.69	8.25	1.67	2.16	28.96	0.00	4.94	6.06	7.60	9.35	6.26	4.52	9.01	0.00	12.12	4.10
31	ER3a	ExonRegion	0	18.71	82.84	35.16	77.54	78.86	224.32	64.52	53.43	55.85	45.94	44.14	50.55	43.59	43.56	24.53	14.21	22.09	19.46	16.63	43.43	18.80	37.93	12.09
32	E3_Da	KnownBoundary	0	0.00	30.72	5.38	48.05	37.61	99.77	41.69	38.40	37.88	17.11	0.00	0.00	14.93	4.59	0.00	3.67	8.42	6.09	0.00	12.59	0.00	16.29	0.00
33	E3a_E4a	KnownJunction	0	35.34	151.75	31.43	48.11	51.95	180.80	65.71	30.64	26.76	29.71	32.96	85.23	82.79	83.82	51.05	19.48	22.07	6.14	17.13	46.92	8.90	52.91	4.35
34	E3a_E7a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
35	ER3b	ExonRegion	0	1.06	22.05	5.78	20.55	18.78	51.74	15.32	27.38	21.99	11.15	2.03	9.08	5.61	5.89	3.50	1.84	1.46	2.90	4.78	11.74	0.00	11.28	0.00
36	E3_Db	NovelBoundary	1	9.33	18.09	10.70	28.57	11.88	59.91	8.92	46.58	39.87	21.01	0.00	69.17	6.17	0.00	0.00	4.19	4.21	3.56	4.42	12.85	2.41	8.70	0.00
37	I3	Intron	1	7.47	51.86	4.30	18.33	14.70	37.41	14.02	16.17	18.05	10.06	0.76	8.69	17.32	2.55	2.41	1.17	2.59	3.98	3.75	16.69	0.86	4.90	2.30
38	I3_AR1	ActiveIntronRegion	0	0.00	1.02	1.84	10.90	10.70	27.51	9.27	6.05	18.53	6.88	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.26	0.00	0.00	0.00
39	I3_SR1	SilentIntronRegion	0	7.65	53.05	4.37	18.59	14.87	37.85	14.21	16.45	18.19	10.19	0.78	8.90	17.69	2.61	2.47	1.19	2.65	4.06	3.81	17.02	0.87	5.02	2.36
40	E4_Aa	NovelBoundary	0	14.30	99.00	5.71	31.00	31.07	99.89	35.82	45.22	50.20	17.30	4.74	18.91	11.69	9.48	4.45	0.00	4.02	7.75	4.71	22.95	0.00	17.33	3.84
41	ER4a	ExonRegion	1	43.20	255.45	38.31	71.53	83.11	159.57	67.76	49.59	54.82	46.74	46.16	87.03	95.25	64.73	22.27	28.15	41.89	13.99	31.71	55.85	11.41	63.55	14.47
42	E4a_E5a	KnownJunction	1	75.72	278.77	49.58	98.76	136.33	207.10	82.45	74.30	76.91	66.70	52.17	116.74	141.22	62.81	15.20	34.61	44.23	17.99	53.46	74.85	13.47	69.56	28.60
43	E5_Aa	NovelBoundary	0	3.41	8.49	7.75	4.43	0.00	5.11	4.02	5.91	1.13	8.62	2.63	14.70	13.64	0.00	0.00	0.00	15.99	2.07	0.00	6.52	0.00	8.33	0.00
44	ER5a	ExonRegion	0	42.29	204.58	57.04	99.83	89.08	161.24	98.63	83.18	77.06	64.76	50.68	105.02	88.32	79.01	52.25	40.06	42.01	30.72	49.22	74.83	15.68	61.73	37.99
45	E5_Da	NovelBoundary	0	30.97	37.23	2.90	19.81	22.92	37.31	20.80	30.52	30.21	17.33	20.22	37.51	20.45	19.19	6.30	12.65	18.23	11.44	3.76	35.79	3.15	13.66	3.84
46	E5a_E6a	KnownJunction	0	38.67	210.16	60.91	130.45	88.88	207.66	101.57	75.37	75.49	58.75	53.65	104.58	40.26	82.05	30.41	34.78	83.40	30.30	54.68	49.15	26.56	48.86	12.89
47	I5	Intron	0	7.98	16.51	4.87	13.20	15.06	15.42	14.60	16.14	9.82	15.37	7.74	24.43	22.90	11.34	6.76	11.56	7.47	9.61	6.65	15.92	4.09	13.30	7.50
48	I5_SR1	SilentIntronRegion	0	8.05	16.61	4.91	13.30	15.18	15.54	14.70	16.27	9.90	15.49	7.78	24.60	23.07	11.43	6.81	11.65	7.51	9.69	6.71	16.03	4.11	13.40	7.54
49	E6_Aa	NovelBoundary	0	29.04	48.68	7.98	49.11	48.64	56.39	34.71	27.36	29.20	14.67	9.84	31.36	6.17	14.36	14.71	3.93	8.13	17.00	12.24	19.69	5.50	12.49	19.89
50	ER6a	ExonRegion	0	43.14	288.73	68.93	119.65	106.97	147.39	80.71	80.23	73.13	63.84	59.29	120.62	76.34	83.19	55.35	42.74	64.30	32.96	60.83	62.19	30.91	52.85	45.89
51	E6_Da	NovelBoundary	0	13.85	62.55	13.60	44.95	36.16	23.57	16.74	25.18	13.69	24.52	7.74	0.00	13.64	7.06	6.30	4.10	0.00	13.85	18.92	31.26	8.03	7.29	10.33
52	E6a_E7a	KnownJunction	0	80.09	385.06	80.16	123.53	98.39	151.73	109.08	65.68	86.57	56.49	34.54	75.17	86.52	67.99	61.07	48.79	75.64	25.41	70.40	77.66	17.11	56.09	43.71
53	I6	Intron	0	21.10	38.66	7.62	16.48	29.18	22.53	14.12	24.50	8.11	18.62	6.72	13.99	6.52	7.53	6.01	4.13	3.06	4.69	5.17	11.34	1.02	14.98	6.13
54	I6_SR1	SilentIntronRegion	0	24.33	36.02	8.22	19.35	34.25	25.67	17.15	27.43	8.86	20.66	8.17	16.42	6.98	8.77	6.05	5.02	2.98	4.36	5.67	12.14	1.37	15.63	6.57
55	I6_SR2	SilentIntronRegion	0	11.08	44.74	5.68	7.57	12.52	13.15	5.04	15.70	6.10	12.93	2.34	7.28	5.19	3.32	5.80	1.20	2.88	5.58	3.73	9.05	0.00	12.55	4.50
56	E7_Aa	NovelBoundary	0	38.23	90.18	19.96	27.10	45.84	47.64	39.44	19.67	17.59	24.87	5.11	12.60	0.00	2.47	5.19	3.50	4.77	3.56	3.48	27.04	0.00	14.45	8.28
57	ER7a	ExonRegion	0	82.94	301.87	94.22	164.39	97.86	178.10	104.21	93.58	91.35	75.45	70.14	93.24	86.81	84.89	79.87	58.45	74.33	44.57	69.46	81.23	26.30	71.44	39.75
58	E7a_E8a	KnownJunction	0	103.13	300.60	113.04	168.01	122.50	225.95	158.99	110.20	92.48	90.63	98.13	95.13	78.40	89.88	51.30	55.63	61.06	45.56	48.57	116.14	22.05	64.60	39.35
59	E7a_E9a	KnownJunction	0	0.00	0.00	0.00	1.86	0.00	0.00	0.00	6.90	0.00	2.31	0.00	11.70	0.00	0.00	0.00	0.00	0.00	0.00	0.00	2.81	0.00	0.00	0.00
60	I7	Intron	0	11.47	29.74	3.46	9.78	6.90	7.41	4.67	7.97	2.22	6.76	4.65	8.19	8.78	8.22	5.06	7.16	4.26	3.24	6.03	6.40	2.08	5.38	7.32
61	I7_SR1	SilentIntronRegion	0	11.51	29.84	3.47	9.81	6.93	7.43	4.68	8.00	2.22	6.79	4.67	8.22	8.81	8.24	5.08	7.18	4.27	3.25	6.04	6.42	2.09	5.40	7.34
62	E8_Aa	NovelBoundary	0	20.89	17.63	6.56	26.60	4.33	45.88	12.72	13.60	4.11	19.64	11.63	0.00	0.00	9.89	14.59	0.00	13.28	14.05	9.60	12.46	3.15	14.63	0.00
63	ER8a	ExonRegion	0	68.79	279.70	83.77	162.45	121.09	208.20	102.68	98.93	91.83	88.64	63.65	91.69	49.86	72.54	61.26	50.06	55.96	63.27	70.29	96.71	35.83	68.11	44.78
64	E8_Da	NovelBoundary	0	7.41	18.94	18.69	23.64	3.99	7.72	3.89	12.73	9.84	15.69	2.68	0.00	6.82	4.77	8.90	4.10	4.77	9.20	9.04	8.56	8.77	14.02	3.41
65	E8a_E9a	KnownJunction	0	50.38	282.98	62.98	123.13	98.64	133.62	62.00	75.62	68.40	55.20	24.69	98.43	46.43	66.46	35.85	40.16	64.80	38.51	60.14	66.60	33.85	27.49	23.22
66	I8	Intron	0	6.02	11.84	9.89	20.77	14.68	18.75	9.59	10.64	6.48	12.73	7.07	4.50	5.49	9.57	7.10	11.27	5.37	13.19	9.06	7.93	3.43	8.33	7.36
67	I8_AR1	ActiveIntronRegion	0	7.56	12.49	14.34	29.01	15.67	20.43	11.14	15.82	10.78	18.80	11.05	6.44	8.28	12.65	9.93	12.31	6.13	19.67	10.47	9.42	4.41	9.52	8.39
68	ER9a	ExonRegion	0	54.32	247.21	66.64	122.53	106.39	144.67	93.04	68.49	65.77	70.68	53.45	43.24	17.29	65.40	53.83	38.85	44.98	43.37	64.55	64.37	29.29	63.94	22.18
69	E9_Da	KnownBoundary	0	73.42	242.72	69.34	146.43	153.65	243.67	123.70	92.54	72.37	62.83	50.07	43.81	26.95	59.45	59.34	28.28	39.46	46.80	80.57	40.91	24.96	66.25	15.88
70	ER9b	ExonRegion	0	104.69	264.26	94.14	193.92	184.35	268.55	143.04	138.22	86.19	87.25	47.87	113.39	70.31	67.24	63.85	35.51	36.71	21.49	58.84	65.33	6.99	77.53	31.01
71	E9_Db	KnownBoundary	0	140.91	296.72	122.76	185.82	209.17	362.63	212.51	165.73	101.10	99.52	66.49	147.65	152.91	75.23	76.27	30.76	73.68	24.42	61.55	48.19	16.74	86.95	33.80
72	ER9c	ExonRegion	0	105.25	176.57	123.05	213.31	162.51	210.94	110.45	163.91	110.06	109.02	54.77	117.99	72.68	59.96	68.12	34.35	42.10	22.99	54.04	55.80	16.02	66.27	23.72
73	IG47	Intergenic	0	4.10	9.14	5.15	13.06	12.02	21.97	8.16	6.35	6.81	4.37	3.75	6.35	2.60	2.47	0.69	1.57	4.65	1.87	1.12	5.25	0.38	0.92	0.26
74	IG47_SR1	SilentIntergenicRegion	0	4.04	9.50	5.70	13.73	12.98	23.83	9.02	6.49	6.78	4.53	3.83	7.84	2.74	2.78	0.75	1.64	4.97	1.55	1.01	6.07	0.24	0.81	0.04