Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SNAP25 Gene 0 50.48 332.45 161.92 404.06 270.64 1070.40 324.84 261.94 676.40 369.23 0.12 0.05 0.00 0.03 0.15 0.00 0.40 300.89 194.22 428.23 42.03 41.02 88.41 2 254976 Transcript 0 6.93 23.55 16.87 45.12 19.99 54.27 38.71 10.80 81.80 10.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 59.88 28.97 58.77 2.00 2.60 1.88 3 304886 Transcript 0 27.17 282.80 110.95 211.12 234.29 1924.44 286.14 327.37 704.11 489.65 0.00 0.00 0.00 0.00 0.01 0.00 0.48 412.01 164.33 437.98 40.24 24.68 47.68 4 430336 Transcript 0 0.36 4.37 1.92 3.75 0.46 14.15 4.44 2.22 15.49 5.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.16 2.20 7.98 0.00 0.36 3.50 5 492814 Transcript 0 0.00 2.12 1.65 1.51 0.40 2.45 8.74 1.15 3.34 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.07 4.96 20.90 6.19 3.12 7.23 6 495883 Transcript 0 18.59 105.72 42.05 131.61 69.78 120.63 112.81 34.31 95.20 63.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 81.90 71.81 91.12 35.14 23.87 75.99 7 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 5.35 9.17 2.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 9.56 0.00 1.10 0.00 0.00 8 ER1b ExonRegion 0 17.67 149.88 20.76 42.03 83.84 1361.81 254.49 36.57 139.43 93.32 0.00 0.00 0.00 0.00 0.00 0.00 1.83 223.01 112.86 191.43 37.66 6.97 52.86 9 E1a_E3a KnownJunction 0 43.86 279.82 46.63 74.08 295.08 1893.46 414.16 103.26 367.33 149.67 0.00 0.00 0.00 0.00 0.00 0.00 4.77 403.30 206.22 355.64 42.81 11.88 83.66 10 ER2a ExonRegion 0 0.73 6.11 2.33 4.11 0.92 13.65 6.62 4.44 17.38 6.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.77 4.39 12.71 0.00 0.72 7.00 11 E2a_E3a KnownJunction 0 0.00 2.63 1.51 3.40 0.00 14.65 2.25 0.00 13.60 4.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.55 0.00 3.26 0.00 0.00 0.00 12 ER3a ExonRegion 0 8.77 80.11 54.29 74.87 73.42 504.07 114.28 86.63 326.41 184.77 0.00 0.00 0.00 0.00 0.00 0.00 0.80 278.32 125.94 292.56 51.46 13.67 48.83 13 E3_Ab KnownBoundary 0 7.56 59.53 90.00 158.12 65.03 377.57 81.61 133.90 405.55 268.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 455.66 227.77 596.54 36.14 8.57 71.71 14 ER3b ExonRegion 0 9.72 67.06 93.91 161.10 53.15 323.92 55.16 152.06 476.84 289.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 503.64 192.86 560.10 42.52 6.91 85.10 15 E3a_E4a KnownJunction 0 16.82 112.35 108.30 184.36 49.75 399.71 47.34 165.53 519.90 295.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 521.69 187.02 607.34 56.90 6.25 103.29 16 ER4a ExonRegion 0 10.43 96.69 105.56 186.78 88.87 557.17 93.47 210.30 618.53 349.01 0.00 0.00 0.00 0.00 1.59 0.00 0.00 577.29 186.12 542.35 53.36 14.98 88.38 17 E4_Da KnownBoundary 0 0.00 0.00 4.79 0.00 0.00 0.00 10.07 0.00 4.43 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14.47 8.56 30.04 5.13 0.00 8.02 18 E4a_E5a KnownJunction 0 13.48 125.37 86.51 169.91 194.74 861.89 159.21 211.08 582.55 322.93 0.00 0.00 0.00 0.00 4.45 0.00 0.00 438.33 203.21 544.19 44.42 20.39 87.16 19 E4a_E10a NovelJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21.84 0.00 8.96 5.45 23.30 20 ER4b ExonRegion 0 0.00 2.12 1.65 1.51 0.40 2.45 8.74 1.15 3.34 1.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.07 4.96 20.90 6.19 3.12 7.23 21 ER5a ExonRegion 0 19.01 154.88 123.36 233.28 220.78 1890.42 272.52 289.99 715.28 402.84 0.00 0.00 0.00 0.00 0.77 0.00 0.00 562.24 208.35 500.17 28.56 23.22 66.76 22 E5a_E6a KnownJunction 0 22.00 151.49 106.68 197.14 202.55 2088.80 305.43 298.40 574.50 362.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 407.61 127.63 379.16 9.02 30.19 32.61 23 E5a_E7a KnownJunction 0 0.00 24.73 26.14 55.80 38.37 243.61 71.72 19.14 116.17 21.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 85.77 52.61 78.62 8.90 5.39 7.77 24 Ix Intron 0 2.00 18.94 6.23 28.99 12.95 23.44 55.44 9.84 30.64 13.68 0.00 0.13 0.07 0.03 0.00 0.00 0.20 29.57 21.75 59.94 13.25 13.78 31.72 25 Ix_AR2 ActiveIntronRegion 0 1.97 16.45 3.55 28.15 11.90 14.92 58.13 4.82 25.50 10.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.27 14.02 49.49 4.36 12.57 14.13 26 Ix_SR2 SilentIntronRegion 0 1.31 13.17 6.04 20.64 13.57 10.00 42.54 5.34 17.11 7.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.63 12.33 42.26 4.98 6.82 28.13 27 Ix_AR3 ActiveIntronRegion 0 2.20 20.46 6.69 32.63 13.24 27.87 61.57 11.99 33.10 15.93 0.00 0.28 0.15 0.00 0.00 0.00 0.13 37.54 24.98 65.81 14.96 15.32 37.58 28 Ix_SR3 SilentIntronRegion 0 5.99 31.85 12.76 54.87 22.47 55.12 77.85 20.31 45.43 27.08 0.00 0.00 0.00 0.00 0.00 0.00 1.67 30.84 20.63 73.22 13.94 15.97 38.38 29 Ix_AR4 ActiveIntronRegion 0 3.45 33.39 6.38 43.04 18.66 24.66 51.88 18.19 56.72 17.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37.00 30.26 51.68 22.85 16.83 35.78 30 Ix_AR5 ActiveIntronRegion 0 3.72 35.44 8.78 47.88 27.91 45.83 76.37 20.13 57.52 24.02 0.00 0.00 0.00 0.21 0.00 0.00 0.21 56.52 46.00 83.93 28.08 22.88 59.38 31 E6_Aa NovelBoundary 0 6.15 15.92 17.12 34.39 32.43 47.76 72.96 23.78 51.68 27.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39.71 40.66 66.92 27.80 20.21 46.95 32 ER6a ExonRegion 0 14.46 293.42 111.45 220.46 245.40 2118.26 343.71 323.48 720.53 519.42 0.00 0.00 0.00 0.00 0.02 0.00 1.43 461.23 192.66 487.30 58.45 32.75 74.06 33 E6_Da NovelBoundary 0 10.59 45.65 7.16 44.08 35.06 65.02 54.36 24.56 47.08 39.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 40.13 35.11 90.38 32.74 16.66 37.56 34 E6a_E8b KnownJunction 0 45.05 403.48 114.72 215.76 254.92 1566.26 209.29 360.22 817.29 587.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 367.19 172.71 447.48 53.25 11.08 36.36 35 E7_Aa NovelBoundary 0 0.00 60.32 15.61 63.23 67.74 87.11 104.80 23.95 58.77 33.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 71.38 43.30 82.90 36.39 16.59 56.85 36 ER7a ExonRegion 0 21.49 67.47 35.77 96.33 65.85 268.29 148.93 36.58 162.43 39.95 0.00 0.00 0.00 0.00 0.00 0.00 0.00 153.80 93.62 173.15 21.22 12.62 61.57 37 E7_Da NovelBoundary 0 7.48 52.49 17.98 60.00 34.55 72.63 85.98 31.63 84.08 28.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 137.67 46.97 98.24 47.20 27.37 51.82 38 E7a_E8b KnownJunction 0 13.85 47.10 33.74 90.23 34.63 99.37 74.77 21.60 163.60 20.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 116.07 48.38 117.54 2.90 5.20 3.76 39 Ix Intron 0 7.52 78.16 17.65 69.69 54.87 90.24 90.53 25.22 66.76 34.65 0.00 0.00 0.00 0.00 0.04 0.00 0.06 67.14 45.85 80.20 25.68 20.77 64.40 40 Ix_AR1 ActiveIntronRegion 0 7.53 78.22 17.66 69.74 54.91 90.30 90.60 25.24 66.80 34.68 0.00 0.00 0.00 0.00 0.04 0.00 0.06 67.19 45.88 80.25 25.70 20.79 64.44 41 E8_Aa NovelBoundary 0 10.59 56.31 52.27 99.52 85.14 160.93 117.96 32.82 70.83 60.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 59.98 37.46 94.66 34.60 11.57 61.72 42 ER8a ExonRegion 0 18.59 105.72 42.05 131.61 69.78 120.63 112.81 34.31 95.20 63.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 81.90 71.81 91.12 35.14 23.87 75.99 43 E8_Ab KnownBoundary 0 35.27 84.98 47.01 99.15 80.31 128.51 85.15 28.96 74.51 58.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 79.30 90.73 57.53 40.40 15.25 74.78 44 ER8b ExonRegion 0 57.65 377.06 173.00 323.93 188.29 1325.98 287.21 310.35 740.27 482.55 0.00 0.00 0.00 0.00 0.79 0.00 0.00 504.66 283.62 546.77 87.73 39.39 103.84 45 E8a_E9a KnownJunction 0 43.79 299.75 117.77 254.55 286.76 1569.44 338.37 213.38 680.72 411.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 470.45 285.66 485.13 70.18 52.05 143.75 46 ER9a ExonRegion 0 51.35 384.96 231.96 485.95 328.16 1542.39 358.85 411.19 1140.17 636.20 0.00 0.00 0.00 0.00 0.00 0.00 0.02 1092.16 580.64 811.38 84.32 87.38 217.80 47 E9a_E10a KnownJunction 0 64.53 549.64 362.61 757.35 426.91 1964.66 542.10 584.28 1703.25 855.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1169.07 873.91 1029.77 120.22 99.50 193.69 48 ER10a ExonRegion 0 102.63 660.33 324.20 834.21 555.20 1909.48 616.40 519.87 1323.14 696.18 0.31 0.14 0.00 0.09 0.23 0.00 0.65 407.10 303.86 755.86 51.40 71.82 121.73