Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 MKKS Gene 0 66.15 119.98 97.34 114.71 96.45 197.75 81.93 74.44 80.09 104.64 75.09 100.42 51.16 88.31 79.53 72.41 58.57 80.74 82.61 116.73 57.72 70.23 46.69 2 347364 Transcript 1 54.10 61.38 34.63 37.45 68.33 103.96 62.08 36.85 40.92 28.16 80.78 1.68 11.57 89.54 110.98 132.19 111.37 38.50 156.43 64.54 74.27 32.03 70.98 3 399054 Transcript 0 0.68 1.51 0.58 0.65 1.14 0.18 1.70 0.55 0.39 0.73 0.82 1.23 0.00 0.43 3.37 0.63 2.47 0.59 1.70 2.04 0.24 0.44 1.88 4 419178 Transcript 1 1.60 2.69 2.58 2.83 6.30 6.15 2.24 4.96 5.11 6.26 5.92 41.82 14.38 0.84 0.26 0.36 0.83 0.23 0.00 2.88 0.00 2.67 0.00 5 IG41_AR2 ActiveIntergenicRegion 0 0.38 0.00 0.00 0.00 0.54 1.30 0.28 0.00 0.63 0.20 4.18 17.48 1.78 2.84 2.64 2.88 3.22 0.41 0.00 1.38 0.39 0.18 0.00 6 IG41_AR1 ActiveIntergenicRegion 0 2.82 0.88 0.41 2.25 0.41 0.81 1.35 0.58 1.84 0.37 11.01 7.90 1.53 4.75 6.43 6.17 5.19 2.43 0.00 0.78 0.00 0.94 0.00 7 ER1a ExonRegion 1 32.78 34.75 21.40 15.83 45.74 100.59 51.82 17.92 16.49 10.92 46.84 3.35 9.99 62.59 101.44 61.95 68.46 15.78 60.72 33.52 61.44 44.28 30.57 8 E1a_E3a KnownJunction 1 75.42 88.01 47.87 59.07 90.92 107.32 72.34 55.78 65.36 45.40 114.71 0.00 13.15 116.49 120.53 202.43 154.28 61.23 252.15 95.56 87.11 19.78 111.40 9 ER2a ExonRegion 0 1.35 3.02 1.17 1.30 2.28 0.35 3.39 1.09 0.79 1.46 1.65 2.46 0.00 0.86 1.54 1.27 4.93 1.18 3.40 4.09 0.47 0.89 3.76 10 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 ER3a ExonRegion 1 26.39 70.95 90.59 96.36 104.38 158.43 63.61 84.25 86.63 95.05 245.15 121.86 64.16 264.46 241.92 220.53 230.65 88.38 175.82 159.16 173.93 108.60 127.19 12 E3a_E4a KnownJunction 1 23.19 103.07 121.17 138.08 161.97 409.42 159.56 87.32 98.26 122.03 252.48 221.62 67.69 192.77 230.92 140.65 149.51 71.96 97.89 167.46 108.85 116.71 64.11 13 E3a_E5a NovelJunction 0 0.00 3.35 0.00 3.43 18.93 37.31 2.16 1.77 12.62 7.79 2.63 0.00 0.00 7.89 15.20 7.86 0.00 1.95 0.00 3.26 5.56 5.94 0.00 14 I3 Intron 0 5.25 10.38 3.64 13.35 7.78 9.83 10.14 5.99 5.98 6.94 4.27 11.79 15.92 4.50 3.45 5.51 4.90 3.20 2.72 18.26 3.30 4.93 3.64 15 I3_AR1 ActiveIntronRegion 0 2.84 3.49 1.99 7.70 5.60 9.31 8.84 6.47 9.29 6.06 3.25 14.63 18.71 3.41 2.39 5.71 4.78 2.35 2.50 25.96 6.60 4.42 1.69 16 I3_AR2 ActiveIntronRegion 0 6.89 20.30 9.16 25.30 9.52 18.79 13.64 9.50 13.43 13.80 10.75 17.91 31.29 7.79 6.21 9.96 12.96 6.06 8.43 31.32 8.80 8.38 8.34 17 I3_AR3 ActiveIntronRegion 0 9.72 5.96 6.49 20.23 11.34 13.84 7.96 5.16 11.66 14.97 5.01 14.33 19.29 8.30 4.09 2.93 8.74 4.87 4.40 26.01 6.27 4.31 3.85 18 I3_SR3 SilentIntronRegion 0 8.77 12.14 5.52 23.68 12.34 15.22 12.07 7.79 6.86 10.82 4.11 12.98 21.65 5.05 4.08 5.05 5.09 4.67 4.50 20.68 1.72 4.71 4.11 19 ER4a ExonRegion 0 57.91 145.83 88.50 133.68 121.62 234.59 104.69 90.35 115.47 137.20 140.53 225.43 104.82 115.74 123.24 79.29 79.96 59.12 74.85 139.36 46.24 138.83 56.27 20 E4_Ab KnownBoundary 1 71.49 164.58 80.60 153.36 96.35 269.28 96.41 83.26 115.91 129.34 23.80 296.05 124.34 76.23 75.53 83.23 34.88 174.02 137.60 155.77 47.82 110.53 57.88 21 ER4b ExonRegion 0 85.06 195.46 124.03 144.10 133.71 287.35 125.44 81.84 103.07 137.93 63.67 127.80 63.90 96.14 56.21 82.14 60.26 114.25 102.60 161.38 70.90 79.99 57.77 22 E4_Da NovelBoundary 1 0.00 37.49 0.00 27.77 14.69 12.44 14.71 4.19 15.62 19.99 2.32 17.71 27.11 2.24 4.45 11.71 9.44 10.24 4.33 17.45 14.76 0.00 4.35 23 E4a_E5a KnownJunction 0 205.67 209.04 128.85 135.38 125.38 307.95 131.03 96.57 107.46 127.00 68.44 30.01 51.13 78.29 73.43 60.67 28.99 80.13 78.50 126.68 35.52 34.35 47.46 24 I4 Intron 0 5.85 23.38 3.87 24.56 17.32 23.27 12.29 8.60 7.76 15.08 2.23 10.95 15.87 4.71 5.38 4.38 3.27 3.26 4.04 11.71 2.99 6.81 4.06 25 I4_SR1 SilentIntronRegion 0 3.67 20.56 3.05 22.31 15.90 22.84 11.77 7.09 8.38 13.79 2.57 11.38 15.88 4.43 5.72 5.48 3.89 3.10 4.34 13.02 3.82 6.14 4.45 26 I4_AR1 ActiveIntronRegion 0 4.75 26.71 5.61 27.33 18.88 23.23 13.03 11.92 7.09 18.98 1.31 9.95 21.02 5.82 5.12 2.27 1.72 4.61 3.84 10.53 1.75 9.01 4.29 27 I4_SR2 SilentIntronRegion 0 24.27 36.19 5.79 34.69 24.16 26.83 14.54 11.94 4.94 15.43 1.88 10.32 3.97 4.22 3.58 1.45 2.42 1.35 2.33 5.19 0.00 6.61 0.72 28 E5_Aa NovelBoundary 0 57.71 40.85 10.20 48.25 40.15 69.28 15.94 8.91 4.31 16.90 2.53 17.86 14.61 9.54 4.45 7.52 4.77 4.44 0.00 24.93 0.00 5.45 0.00 29 ER5a ExonRegion 0 150.49 211.21 177.62 203.22 155.44 341.67 128.41 127.37 110.75 153.44 69.41 84.10 43.14 113.73 92.56 83.07 49.16 146.49 131.61 164.01 61.75 74.43 56.25 30 E5a_E6a KnownJunction 0 122.69 166.35 183.70 173.44 124.45 289.09 86.07 152.22 101.82 139.95 76.91 112.39 39.93 76.23 125.97 62.89 57.50 127.10 154.26 144.84 97.42 56.03 69.49 31 ER6a ExonRegion 0 130.50 166.92 208.61 223.84 156.40 342.92 124.27 130.33 121.59 155.96 80.75 65.33 43.98 99.13 92.21 88.01 34.20 198.47 144.58 162.79 88.78 79.76 52.89 32 E6a_E7a KnownJunction 0 206.48 185.56 246.24 186.46 230.73 428.79 135.27 156.04 131.13 175.97 87.97 82.68 31.65 92.12 128.81 77.67 63.02 172.11 179.39 181.40 97.05 85.91 52.07 33 I6 Intron 0 15.37 13.20 6.00 12.16 17.06 14.81 7.57 9.76 6.68 8.19 1.49 6.95 9.87 4.30 3.81 2.41 1.53 1.99 0.86 5.67 0.77 2.09 1.59 34 I6_SR2 SilentIntronRegion 0 23.55 18.58 10.46 17.38 27.11 19.80 9.68 11.98 6.73 13.05 1.12 8.50 13.36 5.48 5.47 3.46 1.65 3.82 0.53 4.95 0.55 2.77 2.44 35 E7_Aa NovelBoundary 0 106.02 24.93 10.59 21.04 82.17 41.79 21.64 22.76 9.64 9.19 2.32 6.30 0.00 12.30 10.51 15.38 4.77 1.87 0.00 3.13 0.00 5.94 4.27 36 ER7a ExonRegion 0 100.74 100.37 142.00 161.10 93.90 197.41 68.95 114.88 95.28 137.89 62.65 62.48 43.35 75.73 102.53 66.53 36.75 97.95 85.31 128.37 52.59 66.11 36.98 37 E7_Da KnownBoundary 0 0.00 3.22 4.17 5.56 4.16 21.75 2.25 9.12 9.26 20.09 15.06 25.96 13.15 0.00 0.00 0.00 0.00 0.00 0.00 2.88 0.00 8.39 0.00 38 ER7b ExonRegion 1 1.60 2.69 2.58 2.83 6.30 6.15 2.24 4.96 5.11 6.26 5.92 41.82 14.38 0.84 0.26 0.36 0.83 0.23 0.00 2.88 0.00 2.67 0.00 39 IG40_AR2 ActiveIntergenicRegion 0 0.00 0.48 2.18 1.32 4.26 3.47 1.49 1.57 6.81 0.65 3.11 30.24 6.74 0.00 0.00 0.00 0.00 0.32 0.00 2.99 0.00 1.66 0.00 40 IG40_SR2 SilentIntergenicRegion 0 0.75 3.41 2.77 2.75 2.65 9.28 3.42 3.86 4.85 4.29 7.78 31.05 15.52 0.76 0.71 1.05 0.93 2.18 1.13 4.70 0.00 4.27 0.21