Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SNRPB Gene 0 177.37 297.34 879.46 301.45 219.06 280.14 251.12 367.45 191.59 658.95 1080.12 172.64 58.21 1096.40 1254.76 934.25 784.02 676.57 592.49 399.87 276.48 410.12 285.98 2 381342 Transcript 0 113.45 265.18 991.57 436.67 110.24 129.47 105.92 482.58 248.01 812.47 1155.49 120.36 105.06 934.84 1026.46 841.11 817.30 662.60 676.57 416.59 276.35 747.98 240.22 3 438552 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 336808 Transcript 0 0.71 0.00 275.92 105.49 5.53 5.32 1.46 145.11 65.95 245.28 3.09 0.00 1.56 2.54 2.03 1.98 0.00 264.60 0.00 0.85 0.44 1.74 1.96 5 339610 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 303103 Transcript 0 0.00 0.00 22.97 6.49 3.90 4.77 7.73 6.57 5.30 15.77 17.85 0.00 0.00 0.00 10.75 29.39 20.10 14.43 15.81 21.99 7.97 20.57 0.00 7 474384 Transcript 0 11.55 40.93 14.54 13.29 30.38 46.81 30.00 19.28 24.55 24.55 17.13 9.78 0.00 22.70 25.23 21.31 19.02 13.87 11.10 19.55 8.73 6.63 2.45 8 ER1a ExonRegion 0 6.60 9.04 3.19 6.35 10.12 5.57 6.84 2.92 2.35 5.15 18.14 0.00 0.00 19.04 43.38 23.10 1.35 2.25 18.57 5.41 2.76 9.54 4.71 9 E1_Ab KnownBoundary 0 26.67 34.66 32.02 25.04 21.82 12.38 19.25 7.97 7.73 37.71 25.37 0.00 0.00 17.48 57.73 11.88 24.59 4.48 8.38 8.95 2.84 8.08 11.27 10 ER1b ExonRegion 1 102.73 166.75 380.65 97.29 134.82 165.84 199.31 49.99 40.57 256.29 370.67 4.88 22.49 395.08 767.86 405.12 409.99 151.47 412.71 115.33 95.32 194.14 131.17 11 E1_Ac KnownBoundary 1 480.60 615.55 1612.75 599.39 504.41 696.08 799.74 231.62 192.04 950.08 1232.10 25.51 86.52 1246.46 1952.17 1415.36 1404.95 525.63 1428.46 424.47 282.38 636.34 470.95 12 ER1c ExonRegion 1 263.51 472.95 901.32 221.84 305.04 384.72 461.79 223.76 124.72 566.36 953.58 17.02 35.50 766.03 1080.98 1011.54 892.97 534.00 1033.00 416.25 208.70 384.98 279.45 13 E1a_E2a KnownJunction 1 233.75 377.76 948.90 244.72 234.55 245.43 283.88 343.17 152.89 563.62 509.66 25.06 11.69 268.41 580.51 432.79 380.83 662.13 522.65 340.49 116.94 182.97 86.90 14 ER2a ExonRegion 0 115.17 125.13 1217.79 417.65 86.08 88.69 98.76 403.51 211.64 758.04 1150.38 321.32 62.73 887.78 1153.02 1232.92 870.44 727.33 889.16 456.77 259.21 407.81 377.67 15 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 E2a_E4a KnownJunction 1 298.13 212.26 2417.98 1018.39 282.26 199.32 222.09 865.47 381.54 1307.21 1680.85 568.69 271.90 2258.47 3660.80 5032.27 1071.06 1917.63 3631.63 1076.75 338.54 995.11 1802.02 17 ER3a ExonRegion 0 9.25 32.62 16.02 17.10 25.53 49.28 24.15 28.35 32.32 38.85 29.13 12.08 0.00 29.72 17.97 29.58 27.15 23.26 20.68 23.68 11.50 5.93 3.86 18 E3a_E4a KnownJunction 0 25.41 90.18 27.62 22.77 65.62 91.14 65.85 29.49 41.32 34.81 22.27 17.26 0.00 38.38 57.73 34.35 29.92 18.36 12.61 34.96 14.70 13.96 3.50 19 I3_AR1 ActiveIntronRegion 0 13.84 35.06 9.49 12.25 30.06 30.27 27.39 21.63 14.11 27.36 15.51 22.69 16.24 20.34 6.01 8.74 13.76 6.74 7.88 7.65 4.74 8.33 6.04 20 I3_SR1 SilentIntronRegion 1 11.92 29.15 8.82 8.18 9.45 30.62 32.57 39.52 16.63 35.48 22.23 5.20 15.32 13.26 20.41 11.39 25.53 13.73 7.54 7.87 10.14 2.08 3.13 21 ER4a ExonRegion 0 211.56 461.44 1660.78 596.71 824.18 1036.96 784.99 649.84 344.10 1068.16 1872.81 481.31 152.64 1743.29 1995.78 2025.96 1256.82 1323.53 1116.61 739.06 471.20 631.10 640.24 22 E4a_E5a KnownJunction 1 175.73 1114.60 1634.03 601.16 896.18 1650.07 1865.26 604.03 349.07 1085.68 2172.92 615.65 84.73 1853.03 2002.11 1348.11 1450.96 1202.94 615.92 698.81 558.90 628.13 476.33 23 E4b_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 ER4b ExonRegion 0 2.12 0.00 9.80 7.90 16.59 15.95 4.37 3.11 1.24 7.91 9.28 0.00 4.69 7.63 6.09 5.94 0.00 8.68 0.00 2.55 1.32 5.21 5.87 25 I4 Intron 0 25.57 20.39 19.70 11.44 25.30 15.41 16.88 22.39 13.27 29.22 27.59 21.04 16.69 23.86 16.09 20.30 22.38 6.11 11.71 6.71 4.21 12.93 6.73 26 I4_AR3 ActiveIntronRegion 1 12.06 14.24 13.79 8.11 27.56 5.50 9.80 13.31 10.07 25.00 33.54 11.47 21.11 30.29 5.66 17.98 28.88 6.65 9.56 4.26 6.61 20.73 2.35 27 I4_AR4 ActiveIntronRegion 1 8.47 7.96 17.16 12.27 22.74 7.34 9.82 19.01 14.20 26.67 31.41 12.99 23.06 30.99 7.49 16.10 18.98 7.08 13.54 3.01 6.06 20.49 3.92 28 I4_AR5 ActiveIntronRegion 1 11.73 12.02 17.76 12.80 27.95 10.36 18.97 22.01 15.41 33.42 34.14 25.78 15.16 28.72 13.06 29.86 27.22 5.30 18.92 7.29 6.02 14.24 9.01 29 I4_AR7 ActiveIntronRegion 0 36.26 27.16 23.35 12.25 26.69 20.50 18.21 25.70 13.62 30.39 26.74 21.62 19.33 23.48 19.70 17.69 21.77 7.03 9.48 7.36 3.54 13.24 6.61 30 ER5a ExonRegion 1 437.05 823.75 1206.40 377.95 271.37 473.60 496.30 471.79 245.45 883.46 1685.36 420.84 61.83 1862.04 1981.06 1222.38 1230.61 1000.74 669.18 550.16 451.90 574.37 385.76 31 E5a_E6a KnownJunction 1 780.66 617.59 1229.14 424.79 395.25 358.03 383.20 507.96 259.81 921.74 1741.34 146.15 19.97 2283.49 2164.54 1640.85 1257.41 1173.71 895.46 584.52 454.93 642.34 520.80 32 ER6a ExonRegion 1 280.14 333.38 874.44 267.20 196.56 245.98 240.56 387.19 196.07 732.45 1173.24 72.64 36.71 1444.57 1783.31 999.04 898.58 757.56 555.72 431.38 297.04 462.39 305.22 33 E6a_E7a KnownJunction 1 453.49 506.09 1431.17 520.95 382.00 535.71 389.12 631.55 300.95 1122.21 1855.73 104.58 109.90 2386.20 2837.76 2143.80 1352.97 1525.90 1198.06 692.35 527.52 788.26 614.27 34 ER7a ExonRegion 1 241.28 391.32 1263.26 443.88 234.48 358.30 280.49 636.11 295.72 1092.56 1847.50 64.50 67.48 2158.39 2218.27 1524.34 1268.69 1398.26 817.60 620.97 515.58 701.34 485.39 35 E7_Da KnownBoundary 1 106.24 186.35 659.79 214.46 92.11 138.39 121.05 325.80 136.66 495.87 745.29 31.51 12.82 552.18 563.45 454.84 467.04 592.24 227.30 278.23 213.44 240.83 166.29 36 E7a_E7b KnownJunction 0 0.00 0.00 817.95 308.55 0.00 0.00 0.00 432.22 196.61 727.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 785.13 0.00 0.00 0.00 0.00 0.00 37 E7_Ab KnownBoundary 1 197.29 246.60 480.62 200.54 153.14 230.21 191.62 286.37 142.13 495.50 822.05 11.70 19.15 561.01 571.61 803.21 746.61 572.55 547.12 351.03 239.76 378.67 239.10 38 ER7b ExonRegion 1 246.36 425.83 1219.00 453.02 236.00 387.67 298.95 659.23 312.98 1121.21 1867.95 68.41 43.15 1963.56 1985.62 1416.52 1336.20 1345.16 854.31 642.55 522.28 716.31 473.39 39 ER7c ExonRegion 1 182.18 313.14 1187.97 476.07 263.17 348.28 274.65 589.72 312.39 1114.91 1672.37 78.26 43.87 1949.89 2050.87 1465.85 1222.50 1186.48 861.18 602.78 455.32 793.18 463.04 40 E7_Db NovelBoundary 0 40.38 66.63 530.64 190.98 98.73 100.17 112.04 197.57 124.80 465.36 403.10 23.26 12.66 314.38 351.07 365.55 339.88 400.19 296.20 176.73 117.93 255.10 102.18 41 E7b_E7c KnownJunction 0 0.00 0.00 22.97 6.49 3.90 4.77 7.73 6.57 5.30 15.77 17.85 0.00 0.00 0.00 10.75 29.39 20.10 14.43 15.81 21.99 7.97 20.57 0.00 42 E7c_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 43 E7d_E9a KnownJunction 1 132.84 200.69 1139.61 490.18 305.60 323.68 244.13 494.65 297.68 996.77 1322.60 24.91 40.91 1262.41 1648.56 1023.92 1035.06 938.63 704.40 549.69 346.02 430.84 348.45 44 E7d_E9c KnownJunction 1 12.52 33.55 231.87 69.82 16.30 11.81 10.78 53.40 26.56 111.50 337.66 11.70 0.00 251.69 268.25 176.96 162.88 66.04 146.36 71.20 47.88 105.57 26.55 45 ER7d ExonRegion 1 101.59 202.34 1225.37 481.10 264.90 292.49 221.10 529.77 305.07 1079.24 1572.41 56.28 46.90 1531.54 1880.01 1181.42 1128.91 974.69 786.78 577.66 398.87 569.84 342.12 46 ER7e ExonRegion 1 115.99 195.22 1226.84 476.46 273.46 308.08 212.10 518.54 301.62 1054.92 1637.17 57.15 41.27 1524.72 1854.48 1125.84 1124.95 939.40 795.70 600.42 420.47 547.13 335.95 47 I7 Intron 0 54.28 29.30 30.52 12.87 40.86 48.61 36.62 11.13 9.55 23.64 27.29 10.49 8.03 24.40 19.82 22.27 21.88 12.72 13.77 9.20 8.89 15.61 12.69 48 I7_AR1 ActiveIntronRegion 0 54.87 29.63 30.86 13.02 41.33 49.12 37.03 11.26 9.66 23.90 27.59 10.61 8.12 24.68 20.03 22.52 22.13 12.86 13.92 9.29 8.99 15.79 12.84 49 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50 ER8a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 51 I8 Intron 0 47.37 30.61 49.19 19.91 35.25 36.68 28.71 26.28 16.59 29.28 46.90 14.02 9.97 23.98 28.46 27.67 33.34 17.20 22.71 10.96 10.91 17.95 10.18 52 I8_AR1 ActiveIntronRegion 0 47.55 30.73 49.38 19.99 35.37 36.82 28.83 26.38 16.65 29.39 47.07 14.08 10.01 24.07 28.57 27.77 33.47 17.27 22.80 10.99 10.95 18.02 10.22 53 ER9a ExonRegion 0 127.90 233.40 1073.40 386.39 200.95 206.42 183.87 531.65 283.50 918.44 1290.91 101.43 62.26 1333.43 1452.46 1014.98 942.72 817.27 660.76 553.39 342.01 584.43 285.56 54 E9_Da KnownBoundary 1 90.61 144.51 641.37 264.07 34.72 72.97 55.95 267.15 156.68 477.61 672.33 34.66 17.69 384.72 311.02 559.43 409.54 373.99 465.43 243.46 149.25 490.11 176.19 55 E9a_E9b KnownJunction 0 0.00 0.00 522.66 233.70 0.00 0.00 0.00 287.76 155.09 470.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 247.39 0.00 0.00 0.00 0.00 0.00 56 E9_Ab KnownBoundary 0 0.00 0.00 8.93 6.09 0.00 0.00 0.00 2.46 5.35 6.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.49 0.00 0.00 0.00 0.00 0.00 57 E9_Ac KnownBoundary 1 17.04 55.52 237.01 134.32 41.43 16.13 31.58 125.15 62.27 175.97 293.34 64.52 46.91 138.09 168.00 151.84 229.55 158.52 110.40 145.54 85.69 147.70 57.71 58 ER9b ExonRegion 0 113.45 265.18 991.57 436.67 110.24 129.47 105.92 482.58 248.01 812.47 1155.49 120.36 105.06 934.84 1026.46 841.11 817.30 662.60 676.57 416.59 276.35 747.98 240.22 59 ER9c ExonRegion 0 126.46 268.94 1027.47 441.92 129.77 143.95 106.25 461.93 249.18 798.53 1212.41 134.21 100.84 898.95 1002.38 838.88 819.45 654.57 723.87 417.02 284.83 719.86 253.29 60 ER9d ExonRegion 0 175.84 283.16 976.46 409.64 170.60 154.53 121.02 394.69 212.81 666.57 1272.06 168.97 119.79 824.88 1052.06 763.76 801.14 531.35 662.81 392.06 308.16 472.90 223.11 61 E9_Db KnownBoundary 1 330.50 344.22 728.51 303.69 226.15 189.72 150.59 256.71 132.46 408.76 1145.87 152.30 124.99 718.35 1136.17 724.08 662.08 346.34 622.98 349.37 313.03 283.02 221.94 62 ER9e ExonRegion 1 129.11 193.02 527.65 168.20 167.32 143.21 133.17 279.63 123.73 390.38 690.17 122.49 101.18 643.22 699.72 376.66 432.00 253.24 310.54 203.59 178.75 201.17 111.38 63 ER9f ExonRegion 1 59.02 89.32 169.20 39.47 118.86 80.97 87.28 135.48 43.85 157.66 243.92 47.96 45.64 332.76 282.20 146.43 121.88 102.48 90.05 112.11 53.31 57.86 54.10