Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 GNRH2 Gene 0 1.18 1.64 3.40 2.27 2.82 3.86 1.72 6.07 15.40 6.99 1.08 0.66 0.24 1.32 2.76 1.47 1.23 6.09 2.57 3.30 2.05 0.65 4.19 2 359987 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 245983 Transcript 0 0.00 0.00 0.03 0.00 0.00 0.92 0.00 0.94 11.19 2.22 0.00 0.00 0.00 0.00 0.00 0.34 0.00 0.17 0.00 0.00 0.70 0.00 0.93 4 359100 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 380347 Transcript 0 1.23 2.39 4.34 2.51 5.20 5.23 1.69 9.40 15.32 6.67 1.98 0.46 0.49 2.01 3.78 1.90 0.84 8.03 2.85 4.09 2.00 0.80 5.09 6 380346 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 IG1 Intergenic 0 6.62 6.86 8.98 8.84 10.75 15.57 6.19 16.87 34.90 14.13 2.10 2.43 4.17 2.24 3.70 6.25 6.69 11.91 8.70 8.23 5.77 1.65 5.34 8 IG1_AR1 ActiveIntergenicRegion 0 5.39 7.48 8.10 9.68 9.37 21.81 6.61 19.41 34.27 13.18 1.66 0.98 2.17 2.26 4.50 5.39 7.15 11.23 7.46 7.78 5.55 2.10 4.44 9 IG1_SR2 SilentIntergenicRegion 0 7.81 6.27 9.84 8.04 12.09 9.58 5.79 14.45 35.54 15.07 2.53 3.84 6.10 2.22 2.93 7.07 6.25 12.58 9.90 8.68 5.99 1.21 6.20 10 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.69 0.00 0.00 0.00 0.00 0.78 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 E1_Da NovelBoundary 0 0.00 9.47 6.86 6.76 3.48 8.69 6.05 4.19 44.53 12.81 0.00 0.00 6.82 2.47 0.00 0.00 0.00 17.45 4.80 11.89 2.66 2.94 8.37 12 E1a_E2b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.37 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 I1 Intron 0 3.14 2.71 6.77 5.42 4.36 6.25 3.34 12.22 23.19 7.10 0.86 1.59 0.57 3.56 4.43 1.76 0.98 9.94 8.97 9.78 9.14 3.09 4.35 14 I1_SR1 SilentIntronRegion 0 3.16 2.73 6.81 5.45 4.39 6.28 3.36 12.30 23.33 7.14 0.86 1.60 0.58 3.58 4.45 1.77 0.98 10.00 9.03 9.84 9.20 3.11 4.38 15 E2_Aa NovelBoundary 0 0.00 10.00 12.36 4.66 0.00 4.94 0.00 14.01 20.02 7.52 2.11 0.00 0.00 0.00 9.02 0.00 0.00 12.81 4.33 8.63 3.15 0.00 3.24 16 ER2a ExonRegion 0 1.23 2.39 4.34 2.51 5.20 5.23 1.69 9.40 15.32 6.67 1.98 0.46 0.49 2.01 3.78 1.90 0.84 8.03 2.85 4.09 2.00 0.80 5.09 17 E2_Ab KnownBoundary 0 6.52 0.00 7.27 3.43 0.00 8.06 0.00 14.50 8.01 2.58 0.00 0.00 0.00 0.00 4.45 0.00 0.00 1.82 0.00 3.26 2.35 0.00 7.34 18 E2_Ac KnownBoundary 0 0.00 2.83 0.00 1.60 7.39 0.00 0.00 0.00 13.92 5.35 0.00 0.00 0.00 0.00 6.30 0.00 0.00 8.37 0.00 0.00 2.59 0.00 0.00 19 ER2b ExonRegion 0 4.23 2.03 7.35 4.09 2.68 5.50 0.00 6.91 23.16 9.18 0.00 4.33 0.00 1.62 7.98 1.49 0.00 7.39 0.00 8.51 4.41 0.00 5.87 20 ER2c ExonRegion 0 2.29 1.83 4.76 4.10 1.51 5.10 2.60 6.03 19.79 8.88 0.00 2.22 0.00 1.04 2.57 1.81 0.00 7.79 2.08 3.30 1.95 0.00 5.06 21 E2_Da NovelBoundary 0 0.00 6.31 4.26 0.00 7.81 5.68 0.00 7.89 16.58 8.81 2.58 0.00 0.00 0.00 9.77 7.86 0.00 11.40 0.00 2.43 0.00 0.00 4.10 22 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.97 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 E2a_E3b KnownJunction 0 0.00 0.00 1.21 0.00 0.00 0.00 0.00 0.00 8.71 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 E2a_E3c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.22 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 ER3a ExonRegion 0 0.00 0.00 0.06 0.00 0.00 1.83 0.00 1.89 13.42 4.43 0.00 0.00 0.00 0.00 0.00 0.68 0.00 0.34 0.00 0.00 1.40 0.00 1.87 26 ER3b ExonRegion 0 0.00 0.00 1.23 0.00 0.00 1.83 0.00 1.73 21.41 8.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.85 1.06 0.71 2.20 0.00 2.94 27 ER3c ExonRegion 0 0.81 0.78 2.02 1.23 0.00 1.72 2.03 1.70 19.25 11.37 0.74 0.00 0.00 0.62 1.70 1.14 5.06 4.13 3.64 3.98 3.94 1.60 4.13 28 E3a_E4a KnownJunction 0 0.00 0.00 1.36 2.06 0.00 0.00 0.00 0.00 16.03 3.12 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 E4_Aa NovelBoundary 0 5.63 0.00 0.00 0.00 0.00 18.11 0.00 2.55 5.50 2.93 0.00 0.00 0.00 0.00 4.45 0.00 0.00 0.00 4.42 0.00 0.00 2.51 0.00 30 ER4a ExonRegion 0 0.00 0.00 0.31 0.73 0.00 0.00 1.08 0.00 5.76 0.61 0.00 0.00 0.00 0.00 1.74 0.00 0.00 0.00 2.71 0.00 0.00 0.00 0.00 31 ER4b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00