Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RNF24 Gene 0 21.97 142.73 50.60 59.23 48.92 74.65 54.66 63.37 56.25 74.22 31.61 25.93 22.79 15.90 9.64 23.75 15.01 94.01 37.19 68.88 286.25 429.55 273.41 2 358395 Transcript 0 4.07 27.88 1.28 4.29 6.21 17.68 10.80 5.32 6.74 7.62 4.88 0.00 0.67 5.39 0.86 2.08 2.31 17.92 5.56 13.84 55.42 59.32 68.92 3 336095 Transcript 0 1.98 8.46 5.90 5.57 4.60 3.30 5.26 0.02 2.39 5.50 0.00 0.00 0.00 0.28 0.21 0.28 0.34 9.33 0.70 4.39 12.84 21.36 9.82 4 432261 Transcript 0 2.67 18.33 9.55 14.50 4.88 1.81 9.53 6.33 18.20 36.25 4.53 7.33 7.76 8.50 0.05 5.90 15.32 13.43 15.91 25.78 80.87 62.39 24.56 5 ER1a ExonRegion 0 8.13 40.04 2.55 6.52 5.11 35.36 19.56 9.08 10.45 10.89 7.65 0.00 1.35 6.24 1.73 4.15 4.61 33.69 11.13 22.25 91.44 81.17 109.08 6 E1a_E4a KnownJunction 0 0.00 15.72 0.00 2.06 7.30 0.00 2.03 1.56 3.04 4.35 2.11 0.00 0.00 4.53 0.00 0.00 0.00 2.16 0.00 5.43 19.40 37.47 28.77 7 ER2a ExonRegion 0 0.19 4.22 3.19 3.21 0.55 2.00 3.89 0.04 1.80 5.50 0.00 0.00 0.00 0.56 0.43 0.56 0.69 9.53 1.40 5.51 16.23 11.12 11.95 8 E2a_E4a KnownJunction 0 3.78 12.70 8.60 7.92 8.66 4.60 6.62 0.00 2.98 5.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.12 0.00 3.26 9.45 31.60 7.68 9 I2 Intron 0 5.23 17.59 9.90 15.56 11.43 7.10 17.33 11.29 9.22 9.12 0.55 3.77 4.90 0.24 1.73 3.04 1.80 5.72 2.71 13.17 6.10 3.21 16.53 10 I2_SR1 SilentIntronRegion 0 3.51 13.15 9.65 12.71 9.75 5.97 17.38 9.98 8.30 8.35 0.48 3.04 3.81 0.19 1.46 2.95 2.04 4.73 2.62 11.94 5.35 1.96 14.99 11 I2_AR2 ActiveIntronRegion 0 13.94 58.40 14.33 22.76 14.62 7.45 18.55 22.74 13.67 12.93 0.81 8.42 2.82 0.46 1.53 2.08 2.77 4.26 2.23 18.48 4.94 6.42 15.64 12 I2_AR3 ActiveIntronRegion 0 3.77 26.34 19.46 23.29 15.31 7.78 15.38 16.70 11.52 11.75 1.34 3.81 4.10 0.36 5.40 5.47 0.44 6.96 4.44 15.17 6.68 4.87 21.29 13 I2_AR4 ActiveIntronRegion 0 1.66 24.04 10.68 9.35 7.64 0.33 16.22 15.68 6.31 9.38 1.93 1.86 2.35 0.00 2.90 3.50 1.89 4.09 12.06 16.72 10.55 4.32 16.05 14 I2_SR3 SilentIntronRegion 0 8.28 18.64 13.49 17.72 12.68 11.17 21.94 15.60 12.63 14.12 1.16 4.24 5.09 0.26 2.79 4.69 2.39 8.84 3.27 17.05 6.12 4.98 24.05 15 I2_AR5 ActiveIntronRegion 0 3.50 11.83 9.59 18.01 8.43 7.22 15.50 19.88 14.18 16.28 0.81 6.50 8.34 0.16 1.39 4.28 0.96 12.17 3.85 20.32 12.86 4.69 23.76 16 I2_SR4 SilentIntronRegion 0 2.31 14.60 9.38 17.12 7.17 9.51 20.88 12.90 11.70 12.14 0.46 3.82 6.09 0.19 1.27 5.88 2.13 6.54 1.84 14.40 7.48 4.47 18.26 17 I2_AR6 ActiveIntronRegion 0 6.99 22.30 9.10 13.56 10.25 5.06 18.79 7.37 7.49 6.12 1.10 5.42 10.02 0.00 2.09 2.54 0.47 8.65 4.89 14.91 7.09 3.96 18.14 18 I2_AR7 ActiveIntronRegion 0 3.46 17.38 4.56 13.45 15.16 7.05 20.72 10.15 8.49 10.34 0.00 3.16 13.38 0.13 1.93 2.85 0.63 2.04 2.44 15.31 2.53 3.79 5.92 19 I2_SR6 SilentIntronRegion 0 7.42 23.92 9.14 16.37 12.67 6.56 16.67 9.73 8.40 7.39 0.30 3.87 6.96 0.18 1.71 1.87 1.11 3.77 2.81 11.88 3.54 3.31 12.23 20 I2_AR8 ActiveIntronRegion 0 6.91 46.62 23.08 52.40 23.21 6.72 23.10 18.70 17.96 12.57 0.55 4.60 2.45 0.64 1.62 3.27 3.76 6.56 3.36 17.10 9.96 6.50 24.72 21 I2_SR7 SilentIntronRegion 0 12.97 27.81 7.09 19.43 19.03 8.80 15.87 8.29 7.85 7.62 0.24 4.75 2.40 0.55 1.47 1.76 2.95 8.98 3.63 11.27 8.15 5.34 18.07 22 I2_AR10 ActiveIntronRegion 0 12.58 23.00 13.09 27.52 8.69 10.61 19.14 13.41 11.28 8.93 0.51 3.03 8.29 0.71 2.72 1.83 4.36 10.13 0.84 18.66 10.69 5.11 25.21 23 I2_AR11 ActiveIntronRegion 0 20.55 27.94 10.35 33.75 67.23 25.20 30.13 12.51 11.36 10.01 1.03 3.79 10.75 1.35 4.47 4.15 3.44 6.79 0.00 26.62 12.28 8.42 25.39 24 I2_AR13 ActiveIntronRegion 0 7.75 17.72 12.00 23.04 21.17 8.71 18.31 8.59 9.13 6.22 0.78 7.01 6.51 0.00 1.42 1.77 1.34 4.61 1.89 14.39 3.93 4.66 19.85 25 E3_Aa NovelBoundary 0 0.00 34.99 31.46 48.38 11.71 19.25 74.46 24.07 21.85 22.38 11.90 16.96 26.13 6.65 6.30 4.19 0.00 14.92 13.27 13.68 40.46 12.61 49.77 26 ER3a ExonRegion 0 1.93 14.89 6.63 5.99 2.20 1.41 10.76 2.81 9.66 19.72 3.90 8.81 8.21 4.99 0.10 3.50 8.49 8.38 9.04 17.74 51.28 41.26 17.36 27 E3_Da NovelBoundary 0 6.45 16.05 1.12 12.59 7.98 16.35 31.93 12.77 22.05 5.53 4.84 0.00 0.00 0.00 0.00 3.25 0.00 4.68 0.00 20.01 11.49 0.00 12.21 28 E3a_E4a KnownJunction 0 3.41 21.77 12.48 23.01 7.56 2.21 8.30 9.86 26.74 52.78 5.16 5.85 7.30 12.01 0.00 8.29 22.16 18.49 22.78 33.81 110.46 83.52 31.76 29 E4_Aa NovelBoundary 0 3.19 18.88 7.39 20.34 12.99 8.46 20.05 8.26 10.01 6.45 0.00 0.00 0.00 0.00 0.00 0.00 4.77 0.00 0.00 17.26 9.20 4.78 4.35 30 ER4a ExonRegion 0 12.46 98.45 38.81 59.84 24.14 37.18 37.09 45.80 55.76 79.14 29.72 27.74 8.88 19.22 11.49 15.87 14.46 68.65 24.08 72.99 162.97 322.61 196.50 31 E4_Da NovelBoundary 0 3.33 17.17 10.35 15.35 3.65 4.88 16.52 3.98 9.37 4.06 0.00 13.20 0.00 0.00 0.00 0.00 0.00 4.10 0.00 18.41 3.15 0.00 3.84 32 E4a_E5a KnownJunction 0 10.22 99.85 45.24 52.37 51.10 131.74 77.90 51.51 62.30 74.57 39.59 37.81 13.64 31.43 33.38 23.67 31.23 92.15 14.02 117.93 162.91 424.72 392.07 33 I4 Intron 0 5.19 12.86 6.78 18.15 7.52 4.73 13.18 7.35 6.12 5.00 0.42 2.50 2.20 0.47 1.02 1.45 1.14 4.56 3.33 10.95 5.15 5.44 10.45 34 I4_SR1 SilentIntronRegion 0 5.20 12.88 6.79 18.17 7.53 4.74 13.20 7.36 6.13 5.01 0.42 2.51 2.20 0.47 1.02 1.45 1.14 4.57 3.33 10.97 5.16 5.45 10.46 35 E5_Aa NovelBoundary 0 3.41 33.94 8.87 26.74 42.70 2.73 44.91 4.11 9.17 10.72 0.00 7.05 13.64 0.00 4.45 3.42 0.00 0.00 0.00 6.01 2.84 10.59 4.35 36 ER5a ExonRegion 0 15.46 106.17 57.51 57.40 50.09 96.59 69.89 50.97 66.55 99.73 50.97 31.82 28.03 30.56 20.51 20.18 15.20 99.43 36.89 107.22 206.43 469.42 250.50 37 E5_Da NovelBoundary 0 15.34 57.16 10.91 21.48 3.14 4.94 4.15 16.59 1.79 12.97 0.00 0.00 0.00 0.00 4.45 0.00 0.00 0.00 3.67 7.48 0.00 12.80 4.01 38 E5a_E6a KnownJunction 0 17.93 128.07 68.18 49.94 62.31 90.52 95.17 40.42 57.93 88.94 46.54 69.92 41.72 35.49 10.75 22.81 4.77 65.33 28.61 105.66 264.53 534.26 194.63 39 ER6a ExonRegion 0 26.25 123.32 79.44 65.16 59.38 86.84 79.94 55.64 92.46 127.74 76.30 64.22 55.16 31.83 7.05 45.01 19.73 107.13 19.34 105.88 364.98 675.95 301.78 40 E6_Da NovelBoundary 0 11.19 65.32 3.67 20.34 17.32 0.00 9.76 16.76 5.35 7.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.61 8.50 0.00 16.10 11.95 41 E6a_E7a KnownJunction 0 46.01 169.97 83.65 64.29 74.79 91.08 87.04 55.78 102.28 126.82 100.08 76.37 39.12 21.90 17.80 55.28 31.04 104.71 32.38 138.57 481.80 894.50 388.49 42 I6 Intron 0 3.40 12.71 5.46 18.91 9.23 10.21 13.43 7.43 9.21 6.39 1.45 1.63 2.11 1.20 1.73 3.10 1.58 10.67 3.54 14.90 29.54 18.04 21.42 43 I6_SR1 SilentIntronRegion 0 3.55 12.52 5.31 19.30 9.67 10.12 14.13 7.61 8.47 6.29 1.39 1.70 2.18 1.07 1.75 2.97 1.48 9.69 3.28 14.16 26.95 18.13 20.30 44 I6_AR1 ActiveIntronRegion 0 2.12 12.78 12.25 15.58 2.68 5.50 6.24 6.91 18.70 9.99 0.00 0.00 0.00 0.00 0.00 6.37 0.00 13.73 0.00 28.88 45.02 16.97 29.37 45 I6_AR2 ActiveIntronRegion 0 2.12 12.46 10.88 19.25 2.68 4.81 4.63 5.19 19.14 13.05 0.00 0.00 0.00 0.20 0.00 5.94 0.00 18.02 2.79 31.12 50.13 18.49 36.34 46 I6_AR3 ActiveIntronRegion 0 2.34 14.36 6.40 16.21 6.31 11.28 8.66 6.23 14.57 6.99 2.04 1.19 1.74 2.30 1.67 3.98 2.45 18.12 5.67 20.03 49.01 17.62 29.76 47 E7_Aa NovelBoundary 0 3.78 18.48 11.74 22.31 7.81 13.06 20.76 14.50 15.57 12.92 0.00 0.00 0.00 0.00 0.00 3.50 0.00 20.23 4.61 8.50 58.94 16.17 43.19 48 ER7a ExonRegion 0 25.45 125.75 79.79 69.30 43.45 93.91 50.33 68.53 87.72 117.03 65.67 49.46 29.31 35.20 20.56 46.85 20.92 150.87 53.83 107.13 516.94 649.82 327.88 49 E7_Da NovelBoundary 0 6.89 45.72 14.90 60.76 10.61 7.72 26.01 20.95 31.08 13.30 16.79 6.30 0.00 10.83 10.14 7.69 0.00 46.80 25.32 41.74 66.66 46.54 69.83 50 E7a_E8a KnownJunction 0 23.56 130.04 84.21 58.93 26.83 62.80 53.79 61.94 59.37 110.99 53.33 42.31 25.32 38.50 5.07 28.28 8.23 170.66 50.17 87.31 483.28 476.58 308.25 51 I7 Intron 0 6.09 24.08 9.50 26.51 17.76 14.40 15.38 12.82 17.10 13.80 4.70 3.13 3.42 1.49 1.21 4.93 0.73 21.76 9.51 25.42 45.34 55.33 51.33 52 I7_SR1 SilentIntronRegion 0 6.13 24.23 9.56 26.69 17.87 14.50 15.48 12.90 17.22 13.89 4.74 3.15 3.44 1.50 1.22 4.96 0.74 21.90 9.58 25.59 45.63 55.67 51.65 53 E8_Aa NovelBoundary 0 9.71 27.23 16.79 28.33 29.54 28.45 36.08 29.49 28.33 11.95 8.90 6.30 0.00 6.95 0.00 3.42 4.49 33.66 8.56 33.17 105.02 79.11 68.12 54 ER8a ExonRegion 0 8.74 66.96 52.53 33.01 12.80 24.99 28.21 29.73 41.30 75.62 34.50 27.35 19.74 20.84 9.16 20.72 12.61 102.90 25.30 68.22 329.57 401.20 203.28 55 E8_Da KnownBoundary 0 9.63 80.45 39.71 40.09 15.37 13.00 49.02 54.92 47.86 57.08 14.74 18.31 6.82 16.78 0.00 35.38 21.13 123.28 40.66 62.70 256.01 352.70 235.35 56 ER8b ExonRegion 0 26.34 171.88 57.70 69.45 60.10 88.72 64.11 76.46 63.93 82.34 34.35 28.54 26.55 16.56 10.58 27.04 16.96 105.94 43.69 75.85 324.82 492.16 318.50 57 IG27 Intergenic 0 30.37 151.39 87.49 107.53 90.00 161.54 89.64 110.69 89.53 117.38 38.98 28.22 30.71 19.18 19.35 34.12 22.40 159.27 49.35 100.50 463.76 693.98 483.45 58 IG27_AR3 ActiveIntergenicRegion 0 19.94 212.83 57.59 81.63 73.73 110.70 70.52 92.14 77.75 99.62 33.64 30.31 34.07 17.50 7.08 31.23 18.94 163.86 40.01 84.68 516.41 644.78 430.41 59 IG27_SR2 SilentIntergenicRegion 0 27.95 174.40 77.62 98.46 107.21 178.89 107.20 99.83 88.76 113.58 46.79 20.75 41.56 19.55 20.41 39.97 12.29 229.57 76.67 132.87 623.95 595.46 460.04 60 IG27_AR2 ActiveIntergenicRegion 0 21.75 136.63 70.18 90.80 73.94 139.28 78.33 92.66 73.98 100.70 32.25 19.96 18.31 15.28 13.39 34.84 18.33 164.73 42.61 90.61 495.61 612.75 469.46 61 IG27_AR1 ActiveIntergenicRegion 0 48.03 146.36 136.58 156.76 115.31 192.60 110.00 158.20 127.14 163.57 50.71 39.61 45.63 23.96 31.45 31.00 28.50 166.03 55.41 125.86 428.83 784.75 476.65 62 IG27_SR1 SilentIntergenicRegion 0 17.82 83.57 0.00 0.00 102.02 310.48 106.20 0.00 0.00 0.00 30.63 12.48 15.30 24.74 28.73 58.87 29.42 31.11 89.90 54.78 210.61 952.21 850.63