Order	SeqName	SeqType	IsAE	NBL01_MYCN	NBL05_MYCN	NBL09_MYCN	NBL10_MYCN	NBL02	NBL03	NBL04	NBL06	NBL07	NBL08	NBL11_Rel2	NBL11_Rem1	NBL11_Rel1	NBL12_Rel_Left	NBL12_Rel_Right	NBL13_Rel_Left	NBL13_Rel_Right	NBL14_MYCN_Met	NBL14_MYCN_Pri	NBL15_MYCN_Rel1	SKP01	SKP02	SKP03
1	C20orf27	Gene	0	25.86	29.00	175.32	63.90	20.34	93.61	21.46	62.58	57.18	54.11	110.57	12.51	15.12	89.76	108.60	60.51	56.22	65.80	119.93	54.32	101.20	41.48	29.98
2	379772	Transcript	0	0.05	0.05	1.84	0.21	0.00	1.26	0.26	1.30	1.32	0.93	0.10	0.60	0.00	0.17	0.49	1.31	0.16	2.27	1.23	0.36	1.41	0.00	1.10
3	399672	Transcript	0	0.00	0.23	2.28	0.93	0.30	3.27	0.30	3.61	2.04	0.80	0.54	0.24	0.00	1.46	0.17	0.83	0.00	5.00	0.91	1.08	0.49	0.12	0.33
4	379765	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
5	405186	Transcript	0	8.66	8.18	58.68	27.92	9.55	49.30	12.70	25.89	22.77	15.57	13.48	2.35	5.69	15.19	18.68	9.72	6.53	20.23	27.92	18.44	13.52	9.09	7.24
6	217195	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
7	487464	Transcript	0	0.00	1.68	7.30	0.93	0.00	0.00	0.00	0.99	0.87	0.00	1.16	0.00	0.00	2.35	0.00	2.14	0.00	0.00	2.40	4.79	0.00	0.00	0.00
8	399673	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
9	399683	Transcript	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
10	ER1a	ExonRegion	0	0.05	0.05	1.84	0.21	0.00	1.26	0.26	1.30	1.32	0.93	0.10	0.60	0.00	0.17	0.49	1.31	0.16	2.27	1.23	0.36	1.41	0.00	1.10
11	E1_Ab	KnownBoundary	0	3.19	2.96	0.00	0.00	0.00	19.42	1.99	0.00	1.24	0.00	3.95	0.00	0.00	2.47	17.68	14.01	7.95	9.45	16.85	0.00	5.56	0.00	7.17
12	ER1b	ExonRegion	0	14.44	7.61	8.92	4.72	0.21	52.57	12.80	0.18	5.10	9.47	29.24	1.78	0.24	37.77	31.99	38.18	18.37	6.30	20.58	8.57	15.77	4.33	26.43
13	E1_Ac	KnownBoundary	0	18.37	6.18	1.48	3.90	0.00	44.35	20.09	2.51	3.27	5.86	27.38	0.00	0.00	24.07	15.20	36.66	9.54	7.25	18.45	15.92	9.08	6.25	25.69
14	E1_Ad	KnownBoundary	0	0.00	0.00	6.95	4.06	0.00	5.74	2.25	0.00	0.00	4.84	10.74	0.00	0.00	0.00	0.00	13.07	0.00	4.68	0.00	3.26	0.00	3.12	0.00
15	E1_Ae	KnownBoundary	0	3.78	0.00	7.04	2.00	0.00	5.79	0.00	4.68	0.00	1.67	0.00	0.00	0.00	3.00	0.00	8.54	0.00	5.06	0.00	0.00	3.15	0.00	0.00
16	E1_Af	KnownBoundary	1	109.35	107.81	108.66	18.61	70.37	387.05	100.56	19.02	26.42	26.57	110.55	6.15	0.00	102.36	118.43	101.43	86.77	63.92	125.84	59.63	74.13	33.00	60.61
17	ER1c	ExonRegion	0	35.98	29.92	37.11	8.76	14.91	114.48	38.21	2.96	10.94	18.02	63.23	4.33	4.69	126.68	113.98	82.79	42.44	21.65	35.04	31.31	30.54	15.78	45.73
18	ER1d	ExonRegion	0	54.73	49.68	57.77	11.29	27.14	179.19	57.50	5.93	14.29	21.63	80.63	7.42	4.69	172.62	152.11	99.78	55.17	29.30	65.53	40.43	41.56	20.24	60.83
19	ER1e	ExonRegion	0	82.33	82.56	86.76	13.49	41.47	307.71	72.69	9.33	17.42	25.00	99.54	8.66	4.69	188.24	177.56	106.10	76.58	48.23	121.68	56.38	69.20	32.29	66.96
20	ER1f	ExonRegion	0	69.77	76.31	124.43	16.65	43.15	313.31	63.41	21.46	31.42	34.80	71.34	5.51	3.92	102.76	91.79	82.90	57.32	64.47	151.51	58.45	64.11	37.16	48.48
21	E1_Da	KnownBoundary	0	0.00	0.00	1.21	0.00	0.00	0.00	0.00	0.00	1.65	1.18	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
22	E1a_E2a	KnownJunction	0	26.67	10.59	138.37	24.31	30.48	109.71	22.48	33.76	53.99	39.27	29.38	0.00	12.99	41.09	18.54	26.40	28.61	41.83	93.46	22.24	15.75	19.47	23.90
23	E1a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	1.97	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
24	ER1g	ExonRegion	0	0.00	0.46	2.73	0.46	0.60	1.77	0.59	3.24	2.74	1.59	1.09	0.49	0.00	0.80	0.33	1.67	0.00	3.28	1.82	2.15	0.98	0.23	0.67
25	E1b_E2a	KnownJunction	0	0.00	0.00	1.83	1.40	0.00	4.77	0.00	3.98	1.33	0.00	0.00	0.00	0.00	2.12	0.00	0.00	0.00	6.72	0.00	0.00	0.00	0.00	0.00
26	ER2a	ExonRegion	0	10.92	9.91	124.71	29.54	6.98	30.25	7.73	43.25	41.36	55.20	83.36	7.96	16.82	44.30	68.60	29.86	46.17	33.28	70.08	33.85	69.91	20.93	13.77
27	E2_Ab	KnownBoundary	0	16.15	20.59	137.28	43.15	7.22	28.51	2.21	52.90	43.00	59.58	112.50	5.70	22.24	53.15	96.17	56.05	70.31	38.51	116.14	37.01	113.67	39.86	22.19
28	E2_Da	KnownBoundary	0	2.96	0.00	24.01	8.72	0.00	10.73	0.00	1.68	6.34	4.46	4.63	0.00	0.00	0.00	0.00	0.00	0.00	0.00	7.91	0.00	3.15	2.45	0.00
29	E2a_E3a	KnownJunction	0	31.78	26.51	400.96	125.66	12.39	31.35	23.01	123.67	125.81	146.80	399.89	13.05	37.50	255.28	256.88	212.42	182.23	138.25	376.10	148.80	285.29	124.79	99.19
30	ER2b	ExonRegion	0	19.99	25.42	271.42	72.54	10.11	34.33	14.78	91.13	87.35	103.41	295.84	7.22	23.19	195.17	215.98	148.61	140.29	93.31	272.35	108.98	246.20	94.57	69.99
31	ER2c	ExonRegion	0	1.30	3.17	22.33	6.80	3.64	10.78	4.50	2.72	4.96	4.25	3.97	7.27	0.00	4.68	4.37	8.72	0.00	1.65	6.71	1.39	3.41	2.89	2.94
32	E2b_E3a	KnownJunction	0	0.00	6.45	20.08	2.03	0.00	0.00	0.00	3.98	4.48	4.62	0.00	0.00	0.00	2.47	0.00	0.00	0.00	0.00	4.42	0.00	2.59	2.57	4.35
33	I2	Intron	0	1.93	2.23	14.92	18.08	3.91	21.51	4.17	5.53	9.75	6.79	1.77	0.98	0.35	3.12	3.79	4.48	2.71	6.29	6.11	3.01	4.02	1.62	2.28
34	I2_AR1	ActiveIntronRegion	0	1.94	2.23	14.95	18.11	3.92	21.55	4.18	5.54	9.77	6.80	1.77	0.98	0.35	3.13	3.80	4.49	2.72	6.31	6.12	3.01	4.03	1.62	2.28
35	ER3a	ExonRegion	0	65.26	66.25	572.87	169.00	38.15	151.47	35.33	161.85	164.06	174.22	332.11	29.52	29.75	230.44	305.48	146.36	171.95	127.13	291.85	173.60	301.75	122.74	71.36
36	E3_Da	NovelBoundary	0	0.00	3.03	22.77	5.43	3.82	24.30	12.37	11.58	9.43	5.43	0.00	0.00	0.00	0.00	0.00	4.19	3.74	11.07	9.60	20.52	3.15	0.00	3.93
37	E3a_E4a	KnownJunction	0	59.57	86.17	773.72	271.33	144.23	393.58	85.19	277.37	241.81	289.87	532.92	109.09	80.03	248.40	351.07	175.68	221.88	201.59	466.65	217.64	433.80	160.00	90.74
38	I3	Intron	0	1.51	2.53	11.59	8.59	3.61	19.35	5.08	6.27	7.98	3.48	1.23	0.59	0.50	2.46	1.76	2.20	1.66	3.67	3.12	3.32	2.91	0.66	2.17
39	I3_SR1	SilentIntronRegion	0	2.07	2.61	10.81	7.43	3.59	19.81	5.41	4.71	5.62	2.61	1.41	0.00	0.44	2.86	1.22	2.54	1.81	3.70	2.14	3.76	1.48	0.64	1.43
40	I3_AR2	ActiveIntronRegion	0	0.80	0.84	7.25	5.54	6.32	21.10	9.64	9.18	9.87	6.13	0.00	0.00	0.00	2.57	2.32	2.69	0.00	5.86	2.71	2.84	6.07	0.79	4.13
41	I3_AR3	ActiveIntronRegion	0	0.00	2.03	9.80	2.73	2.68	19.36	0.74	5.76	8.65	5.48	0.00	0.00	0.00	0.00	1.29	0.00	0.00	2.67	3.19	0.24	6.61	0.00	0.00
42	I3_AR4	ActiveIntronRegion	0	1.51	2.70	8.35	9.34	1.95	19.11	4.09	7.76	13.44	3.40	2.07	0.00	0.00	1.84	4.99	1.06	2.56	1.21	6.30	1.83	2.93	0.50	2.09
43	I3_SR2	SilentIntronRegion	0	0.72	1.84	15.21	11.09	3.48	19.44	3.65	7.09	10.79	4.09	1.75	0.40	0.44	2.39	2.05	0.34	1.80	3.74	4.33	3.75	3.00	0.55	3.33
44	ER4a	ExonRegion	0	64.53	125.07	750.30	278.44	72.23	414.33	87.97	248.81	228.24	221.66	511.05	53.51	62.25	345.12	433.12	236.47	260.44	289.25	447.60	248.43	457.61	160.09	104.68
45	E4_Da	KnownBoundary	0	17.26	12.50	69.22	38.52	0.00	44.01	8.44	31.83	30.79	25.47	0.00	0.00	0.00	16.60	15.95	15.72	0.00	27.44	13.46	12.02	13.22	11.21	8.62
46	E4a_E4b	KnownJunction	0	68.09	143.07	731.17	278.85	51.95	228.11	59.80	232.44	218.63	196.74	419.63	50.27	91.23	360.00	451.45	249.51	224.40	315.34	394.93	249.66	399.95	120.75	105.85
47	E4a_E4c	KnownJunction	0	0.00	2.70	5.14	7.49	0.00	2.10	1.90	7.85	5.79	1.24	0.00	0.00	0.00	2.30	15.20	16.49	3.93	0.00	0.00	0.00	0.00	3.12	0.00
48	ER4b	ExonRegion	0	12.31	11.21	68.09	32.29	12.41	52.88	12.63	35.82	26.37	17.60	14.89	4.42	7.60	15.02	16.80	12.81	7.12	23.08	23.23	19.26	13.95	7.77	5.21
49	E4_Ab	KnownBoundary	0	6.74	13.42	38.67	18.45	19.61	31.00	28.79	17.17	27.63	11.55	5.26	0.00	0.00	7.65	17.80	0.00	12.25	16.79	31.72	23.07	5.31	8.88	17.41
50	ER4c	ExonRegion	0	68.01	93.14	687.54	255.00	61.34	272.21	68.33	222.69	218.88	191.03	459.87	59.69	59.70	371.95	446.20	285.93	221.62	316.56	518.33	208.34	409.04	183.91	128.88
51	E4_Db	KnownBoundary	0	6.96	7.70	81.55	18.18	0.00	33.90	8.17	21.69	22.60	9.13	9.00	0.00	0.00	4.83	43.76	11.79	4.30	14.22	37.65	23.01	10.50	4.96	0.00
52	E4b_E4c	KnownJunction	0	53.19	93.40	582.15	192.98	55.94	161.90	40.45	209.44	166.17	155.18	332.61	12.60	28.41	272.30	369.49	201.83	181.02	283.79	261.75	179.74	336.69	96.63	83.66
53	ER4d	ExonRegion	0	5.93	9.03	58.07	24.41	13.30	67.40	9.68	23.38	28.40	12.09	7.63	0.00	0.14	17.72	14.53	10.12	2.22	22.65	30.54	27.64	18.62	9.24	11.93
54	E4_Dc	KnownBoundary	0	10.22	8.49	54.37	16.25	3.14	67.18	12.01	15.61	12.30	14.94	9.48	0.00	0.00	8.59	22.25	4.10	0.00	20.52	15.06	24.22	4.70	8.88	12.63
55	E4c_E4c	KnownJunction	0	0.00	3.35	14.61	1.86	0.00	0.00	0.00	0.00	1.74	0.00	2.32	0.00	0.00	4.71	0.00	4.27	0.00	0.00	4.80	9.59	0.00	0.00	0.00
56	ER4e	ExonRegion	0	5.02	5.16	49.28	23.55	6.69	45.73	12.77	15.96	19.18	13.53	12.06	0.28	3.78	15.35	20.55	6.63	5.93	17.38	32.62	17.63	13.10	10.40	9.27
57	E4_Ac	KnownBoundary	0	3.78	2.50	34.48	24.94	3.31	53.09	3.97	19.18	26.59	11.93	4.79	0.00	0.00	12.89	13.47	16.49	8.98	4.19	18.54	27.36	8.40	2.69	15.02
58	ER4f	ExonRegion	0	71.33	71.20	393.98	144.53	48.79	201.59	46.22	142.74	128.63	131.21	288.07	29.92	37.69	246.10	296.60	153.11	146.66	155.93	325.70	117.63	267.50	109.28	79.06
59	ER4g	ExonRegion	0	25.40	12.20	4.90	5.45	2.68	25.67	7.94	3.46	0.00	1.15	5.80	0.00	0.00	11.37	17.41	5.94	0.00	0.00	9.56	4.26	8.81	0.00	0.00
60	ER4h	ExonRegion	0	4.23	4.07	0.00	0.00	0.00	1.83	3.97	0.00	0.00	1.15	1.93	0.00	0.00	3.25	0.00	0.00	0.00	0.00	0.00	2.13	2.20	0.00	0.00
61	IG18	Intergenic	0	1.91	0.79	10.35	9.94	3.10	14.88	5.46	25.21	9.24	2.42	1.49	0.00	0.00	17.84	11.56	0.77	1.28	3.90	4.92	4.66	4.82	2.41	4.16
62	IG18_SR1	SilentIntergenicRegion	0	2.00	0.82	10.73	10.28	3.24	15.28	5.48	26.27	9.62	2.54	1.52	0.00	0.00	18.34	12.11	0.80	1.27	4.03	5.16	4.80	4.98	2.53	4.36