Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C20orf30 Gene 0 291.99 319.01 363.77 422.21 377.82 439.14 326.50 317.26 235.03 430.95 292.04 392.46 519.25 360.65 440.42 282.74 248.53 144.31 404.27 196.70 270.97 475.06 412.00 2 202834 Transcript 0 80.87 113.53 52.72 36.08 28.27 105.56 36.82 30.71 47.13 54.83 32.81 18.23 43.02 71.44 78.55 39.74 73.35 37.78 24.84 53.04 136.59 42.74 50.87 3 342308 Transcript 0 21.26 3.22 0.00 5.23 0.00 0.00 0.00 2.38 4.63 4.59 5.11 0.00 0.00 7.71 0.00 16.15 0.00 9.33 0.00 0.00 6.30 0.00 12.80 4 379283 Transcript 0 2.61 25.62 17.43 7.40 9.40 31.30 18.96 4.91 3.98 17.21 10.30 1.52 6.10 5.38 7.30 2.38 7.24 5.81 12.58 20.41 11.36 4.89 15.25 5 379279 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 379286 Transcript 0 0.00 2.70 0.00 1.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 4.19 0.00 0.00 0.00 0.00 3.15 0.00 0.00 7 379299 Transcript 1 54.68 52.36 45.33 43.78 30.22 51.90 4.42 24.77 24.42 52.41 35.11 26.41 51.30 46.44 66.01 21.79 76.02 33.45 63.72 24.93 67.52 67.36 45.75 8 492419 Transcript 0 1.65 6.24 6.85 10.60 5.77 4.57 20.87 4.76 4.41 6.69 3.23 8.76 4.23 4.30 7.38 4.99 8.04 7.43 8.00 9.61 1.98 1.65 4.56 9 379277 Transcript 0 3.48 0.00 4.17 0.00 4.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 10 379276 Transcript 0 14.89 11.71 10.76 14.58 17.06 10.85 11.97 6.98 2.89 12.57 2.68 6.30 18.18 13.36 5.19 18.29 21.13 17.99 14.40 23.46 8.09 4.65 15.02 11 379298 Transcript 1 33.92 20.16 22.09 17.60 21.97 17.87 28.03 15.87 13.48 20.03 7.46 31.71 26.49 23.54 14.10 12.39 18.92 12.15 8.48 22.33 16.11 7.95 10.01 12 ER1a ExonRegion 0 2.74 2.75 0.00 0.40 0.00 2.16 1.09 0.92 0.00 0.00 1.14 0.00 0.00 0.96 1.71 4.20 0.00 6.41 3.19 0.63 0.00 0.49 13.47 13 ER1b ExonRegion 1 145.75 102.89 56.67 66.16 119.90 204.39 196.77 58.67 22.03 131.96 72.61 1.29 4.44 50.04 156.82 457.71 61.38 162.00 835.25 62.74 118.35 258.24 948.54 14 E1_Ac KnownBoundary 0 8.96 8.16 1.45 0.00 0.00 9.77 5.70 0.00 0.00 0.00 2.05 0.00 6.33 2.41 0.00 12.22 0.00 12.02 33.98 5.75 3.03 11.76 37.05 15 E1_Ad KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.27 1.71 4.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 E1_Ae KnownBoundary 1 421.93 312.51 208.48 294.97 142.28 354.51 328.35 237.61 112.56 459.47 215.37 17.86 0.00 368.18 579.89 1404.50 196.73 434.35 2743.98 206.26 334.28 1132.45 2861.03 17 ER1c ExonRegion 1 546.06 337.57 174.00 250.77 270.25 531.80 505.75 205.69 103.75 395.68 280.27 8.66 4.69 378.42 693.40 1634.67 254.17 436.07 3322.33 240.42 398.87 1187.61 3503.41 18 ER1d ExonRegion 1 635.86 398.29 205.34 286.21 315.36 634.49 547.36 241.49 137.10 434.35 315.61 12.37 4.69 511.83 781.68 1770.54 294.25 462.20 3612.66 265.35 466.24 1284.04 3873.01 19 ER1e ExonRegion 1 544.06 406.91 243.40 305.83 207.28 483.72 290.56 288.18 196.08 463.33 336.62 14.89 30.39 431.19 451.48 1111.82 379.87 424.91 2105.35 251.56 514.88 802.67 2238.24 20 E1_Af KnownBoundary 0 70.09 132.15 50.50 53.47 16.64 132.82 30.25 67.77 62.18 104.90 77.02 0.00 6.01 37.55 77.38 71.26 103.51 99.61 32.75 74.40 151.60 76.54 63.00 21 E1_Da KnownBoundary 0 32.23 24.54 7.89 11.72 4.33 15.73 2.25 0.00 4.40 8.73 2.68 7.50 6.82 0.00 5.93 17.09 4.21 14.63 4.24 11.89 17.85 6.12 46.61 22 E1a_E3a KnownJunction 0 21.26 3.22 0.00 5.23 0.00 0.00 0.00 2.38 4.63 4.59 5.11 0.00 0.00 7.71 0.00 16.15 0.00 9.33 0.00 0.00 6.30 0.00 12.80 23 E1a_E4b KnownJunction 0 158.99 224.30 105.44 71.75 56.54 208.97 72.56 60.50 94.27 109.65 64.49 36.46 86.03 141.92 155.39 75.28 146.70 69.14 46.50 105.46 273.18 84.99 88.27 24 ER1f ExonRegion 0 150.80 231.57 112.12 99.83 48.83 224.64 60.74 112.57 110.23 174.33 129.02 41.67 63.90 146.98 191.85 137.46 174.53 122.18 46.59 120.21 288.13 110.95 149.77 25 ER1g ExonRegion 0 21.24 42.99 14.06 10.21 9.72 125.15 5.18 6.58 6.11 20.28 3.87 5.92 10.53 8.86 20.05 14.70 10.83 24.34 11.23 15.34 17.48 11.22 23.39 26 E1_Ag KnownBoundary 0 30.60 46.24 22.44 8.06 20.80 246.79 13.07 11.09 7.18 24.04 7.32 18.91 26.13 14.83 16.32 7.09 24.31 31.13 3.86 5.88 24.83 6.00 7.00 27 ER1h ExonRegion 0 33.89 71.90 58.56 64.66 35.30 236.91 19.66 26.48 29.00 68.79 26.25 27.58 29.32 76.66 68.82 83.48 65.08 100.56 66.24 67.75 55.78 107.02 106.03 28 E1b_E2a KnownJunction 0 3.48 0.00 4.17 0.00 4.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 29 E1b_E3a KnownJunction 0 0.00 2.70 0.00 1.40 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 4.19 0.00 0.00 0.00 0.00 3.15 0.00 0.00 30 E1b_E4b KnownJunction 0 23.34 19.34 16.03 13.65 0.00 27.37 10.38 9.57 11.34 20.04 10.58 30.46 12.66 7.42 14.34 10.85 22.72 21.31 4.61 18.41 13.78 13.41 4.01 31 E1c_E2a KnownJunction 0 14.89 11.71 10.76 14.58 17.06 10.85 11.97 6.98 2.89 12.57 2.68 6.30 18.18 13.36 5.19 18.29 21.13 17.99 14.40 23.46 8.09 4.65 15.02 32 E1c_E3a NovelJunction 0 6.67 0.00 0.00 0.00 4.33 0.00 0.00 0.00 0.00 3.33 0.00 0.00 0.00 0.00 0.00 4.36 0.00 0.00 0.00 3.26 13.41 0.00 0.00 33 E1c_E4b KnownJunction 1 54.68 52.36 45.33 43.78 30.22 51.90 4.42 24.77 24.42 52.41 35.11 26.41 51.30 46.44 66.01 21.79 76.02 33.45 63.72 24.93 67.52 67.36 45.75 34 ER1i ExonRegion 0 52.70 53.48 82.22 76.59 49.50 85.27 44.35 34.22 39.77 78.10 42.52 42.43 51.12 51.81 68.47 42.80 86.81 62.82 62.75 72.98 87.49 81.05 58.73 35 E1d_E4b KnownJunction 0 3.11 24.60 18.80 7.16 7.56 36.00 17.40 4.64 4.25 15.26 10.16 0.00 0.00 4.59 5.32 0.00 4.58 5.89 12.42 17.83 10.38 2.69 12.89 36 ER1j ExonRegion 1 42.66 55.06 61.93 44.56 43.22 74.48 42.26 27.26 27.74 63.17 40.74 34.30 46.90 50.35 52.89 32.01 80.49 44.49 69.83 60.56 81.37 74.69 65.28 37 ER1k ExonRegion 0 2.12 26.64 16.05 7.63 11.24 26.59 20.52 5.19 3.71 19.15 10.44 3.03 12.19 6.17 9.28 4.76 9.90 5.73 12.74 22.98 12.34 7.08 17.62 38 ER2a ExonRegion 0 4.47 0.09 11.27 3.54 4.28 0.00 2.94 1.77 3.95 1.20 1.59 9.04 3.44 6.14 3.16 2.31 16.65 7.68 10.97 4.96 1.71 0.23 5.55 39 E2a_E4b KnownJunction 0 3.78 0.00 11.74 7.39 0.00 2.73 3.97 2.26 7.81 1.67 2.47 18.31 6.49 0.00 9.89 0.00 3.83 2.32 4.52 3.00 0.00 0.00 4.35 40 ER3a ExonRegion 0 14.64 8.08 7.25 11.24 6.39 5.17 13.14 4.21 14.01 34.20 15.99 5.55 9.60 13.61 24.09 14.47 6.35 10.77 15.54 27.82 42.85 7.57 11.55 41 E3_Da NovelBoundary 1 278.94 118.20 214.57 180.50 119.35 73.08 140.66 236.13 229.34 204.74 161.94 20.26 28.08 41.44 52.41 395.88 265.64 267.66 101.56 157.43 117.81 105.69 141.62 42 E3a_E4b KnownJunction 0 17.71 9.60 8.34 3.36 0.00 5.56 5.87 8.26 14.84 31.51 12.58 6.30 6.17 14.54 16.81 7.95 0.00 3.86 21.93 8.82 43.43 8.33 7.09 43 ER4a ExonRegion 0 33.92 20.16 22.09 17.60 21.97 17.87 28.03 15.87 13.48 20.03 7.46 31.71 26.49 23.54 14.10 12.39 18.92 12.15 8.48 22.33 16.11 7.95 10.01 44 E4_Ab KnownBoundary 0 51.49 52.42 41.19 31.60 63.92 25.84 50.26 29.70 24.83 33.66 16.79 30.16 47.24 20.43 13.35 11.54 21.41 28.11 22.02 23.20 16.80 11.02 23.73 45 ER4b ExonRegion 0 150.12 218.04 335.69 370.25 115.03 436.33 116.47 306.00 254.28 538.31 356.77 200.96 227.20 399.23 407.97 641.01 414.01 311.60 1263.41 272.98 624.70 686.03 1293.08 46 E4_Da KnownBoundary 0 10.30 19.47 19.16 40.72 16.55 0.00 22.30 4.89 5.70 15.53 5.00 17.26 6.82 7.42 20.03 15.38 0.00 28.02 18.35 42.89 5.87 5.57 10.67 47 E4a_E5a KnownJunction 1 311.46 355.40 486.03 686.26 362.48 1436.45 247.36 520.04 397.45 783.32 505.81 284.34 301.44 1243.63 1456.58 2896.08 700.23 612.93 5700.21 587.97 928.58 2175.26 6024.84 48 ER4c ExonRegion 0 3.30 12.47 13.69 19.43 11.53 9.14 36.00 9.52 8.82 13.37 6.47 17.52 8.46 8.60 14.76 9.98 8.04 14.86 11.68 19.21 3.95 3.29 9.11 49 E4b_E5a KnownJunction 0 0.00 0.00 0.00 1.76 0.00 0.00 5.74 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.04 0.00 4.33 0.00 0.00 0.00 0.00 50 ER5a ExonRegion 0 225.83 422.50 450.74 483.96 318.31 682.84 362.22 356.86 310.83 534.09 326.39 361.46 586.10 592.98 607.42 642.27 359.99 405.75 827.96 304.22 606.75 659.49 950.78 51 E5a_E6a KnownJunction 0 454.90 755.19 538.12 522.31 391.09 831.79 513.48 335.82 272.16 573.80 459.17 403.48 725.76 609.99 558.01 305.13 466.11 182.02 307.96 290.82 823.99 432.68 279.99 52 I5_AR4 ActiveIntronRegion 0 38.08 65.61 26.88 44.08 39.39 21.54 47.43 29.10 19.43 36.07 3.44 17.61 30.15 6.58 16.32 11.93 9.82 7.66 13.74 28.48 3.28 8.36 5.67 53 ER6a ExonRegion 0 467.05 495.41 584.15 684.22 654.08 639.33 536.77 511.82 369.90 660.74 456.43 687.72 905.21 539.13 683.07 287.94 352.22 142.31 347.04 277.77 331.60 684.12 324.30 54 ER6b ExonRegion 0 5.64 4.07 5.92 2.50 7.14 3.06 5.74 5.76 1.85 8.79 0.97 2.16 4.69 1.62 5.32 0.00 0.00 0.00 0.53 1.77 0.00 2.43 0.00 55 IG45 Intergenic 0 20.92 12.06 11.25 24.08 24.54 12.76 19.27 27.07 12.08 24.99 1.99 8.01 11.85 2.79 9.15 5.17 3.92 5.67 6.04 17.50 2.27 2.97 5.34 56 IG45_SR2 SilentIntergenicRegion 0 8.21 13.53 9.11 13.51 20.77 11.18 27.14 4.26 2.03 9.47 1.07 3.95 16.52 0.74 7.54 4.94 1.83 6.11 8.83 15.31 1.22 3.46 1.63 57 IG45_SR1 SilentIntergenicRegion 0 23.12 11.85 11.65 25.94 25.26 13.07 18.02 30.97 13.79 27.67 2.15 8.72 11.12 3.15 9.44 5.23 4.28 5.62 5.60 17.92 2.45 2.89 5.98