Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SLC23A2 Gene 0 82.11 157.57 93.18 173.19 107.98 171.04 99.32 129.69 169.64 142.52 271.71 85.71 144.06 78.84 40.86 19.38 33.62 147.14 68.58 135.63 69.48 181.56 162.81 2 379333 Transcript 0 0.00 0.00 0.00 0.00 2.45 0.23 1.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.27 0.00 0.00 0.28 0.00 0.00 3 468355 Transcript 0 9.62 3.73 3.40 9.47 3.36 2.50 6.24 7.03 7.21 5.31 6.92 3.08 3.25 1.30 2.72 0.71 1.85 5.76 2.95 4.88 2.62 3.48 4.18 4 424750 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 338244 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 437886 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 379324 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 423430 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 496331 Transcript 0 1.91 3.58 1.54 5.28 0.98 3.06 1.97 4.74 8.35 3.27 8.93 4.79 7.51 6.03 2.51 1.69 3.73 5.27 3.06 9.06 11.04 2.58 10.81 10 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 4.91 0.46 2.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.54 0.00 0.00 0.55 0.00 0.00 11 ER1b ExonRegion 0 2.45 0.02 0.00 1.18 1.76 0.94 3.13 0.00 1.07 0.00 0.02 0.00 0.00 0.00 0.00 0.00 0.00 1.45 0.00 0.00 1.13 0.00 0.00 12 E1a_E3b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13 E1a_E3c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 ER2a ExonRegion 1 20.15 49.95 7.39 16.24 26.79 56.83 35.72 17.03 7.12 15.76 117.50 0.00 12.42 11.56 16.02 8.06 19.42 37.39 22.23 66.27 34.65 59.96 70.67 15 E2a_E3b KnownJunction 0 3.78 20.85 8.87 17.51 4.33 14.25 11.26 12.61 11.49 4.19 25.53 0.00 32.30 2.53 14.09 0.00 3.93 29.72 9.60 9.27 0.00 12.25 20.15 16 E2a_E3c NovelJunction 0 0.00 3.03 8.22 8.32 0.00 13.80 2.16 6.57 7.20 7.31 18.11 0.00 22.89 0.00 4.45 4.36 0.00 8.83 0.00 8.31 2.84 12.37 17.24 17 ER3a ExonRegion 0 1.06 8.13 8.58 9.54 4.01 4.58 3.31 9.51 4.32 4.59 11.60 0.00 16.42 1.62 4.35 0.00 3.30 16.63 3.19 5.32 0.00 6.25 8.81 18 ER3b ExonRegion 1 2.12 18.30 17.16 18.74 2.68 11.00 6.62 19.01 9.57 9.75 23.68 0.00 38.69 4.87 8.70 0.00 6.60 33.72 6.37 10.64 0.00 10.42 17.62 19 ER3c ExonRegion 1 7.37 12.98 25.30 29.57 15.57 21.78 10.82 36.82 45.77 46.66 208.80 11.11 43.67 29.75 13.63 9.84 39.58 50.92 22.72 99.25 48.88 49.73 71.01 20 E3a_E4a KnownJunction 1 0.00 2.70 24.60 47.41 11.21 15.16 7.99 56.89 70.72 70.94 204.89 18.46 52.59 106.48 40.18 37.08 17.11 114.16 41.88 162.35 25.08 117.63 243.54 21 ER4a ExonRegion 1 9.96 38.12 28.01 42.87 27.29 69.75 35.06 56.31 92.21 67.07 228.48 43.71 86.82 70.31 15.80 16.36 34.13 123.96 45.76 130.57 71.51 106.42 132.13 22 E4a_E5a KnownJunction 1 14.37 38.87 23.89 36.63 15.28 89.55 37.98 52.99 114.76 79.97 276.54 44.11 89.77 126.85 20.64 16.41 29.83 182.89 51.48 167.21 69.01 126.81 149.39 23 ER5a ExonRegion 0 15.65 38.64 26.31 35.55 16.78 70.17 34.97 62.75 98.17 88.33 233.10 67.00 123.74 92.98 25.76 21.62 33.71 151.33 53.44 138.32 76.19 127.16 152.05 24 E5a_E6a KnownJunction 0 17.04 42.03 16.47 32.63 0.00 68.77 50.04 66.87 121.44 76.13 270.49 92.43 106.16 74.05 37.21 30.50 17.11 125.23 48.57 125.73 97.24 175.50 192.49 25 ER6a ExonRegion 0 18.69 53.46 21.02 44.91 32.25 70.08 71.37 66.21 124.61 90.12 260.59 86.33 106.19 104.37 28.37 25.53 29.20 169.50 63.11 165.43 93.18 184.35 172.41 26 E6a_E7a KnownJunction 1 22.15 62.23 12.80 57.47 48.47 72.34 84.13 67.11 126.36 93.00 262.33 45.46 99.02 74.70 13.97 14.78 24.59 157.65 75.96 168.04 51.52 157.68 187.12 27 E7_Aa NovelBoundary 0 40.08 3.35 8.75 7.59 4.33 0.00 7.77 2.55 7.73 10.07 7.32 0.00 6.82 0.00 0.00 0.00 8.13 2.57 4.33 5.43 2.84 0.00 0.00 28 ER7a ExonRegion 0 19.98 58.88 20.78 57.55 24.41 81.38 39.60 58.14 139.19 79.14 236.02 72.49 119.67 67.92 19.08 22.38 27.31 177.22 73.99 166.86 68.62 149.67 158.89 29 E7_Ab KnownBoundary 0 21.19 83.74 31.16 72.55 23.60 115.22 43.24 66.95 147.77 84.53 225.79 68.87 154.70 46.44 23.36 16.15 22.81 211.79 65.04 156.53 60.48 126.69 158.86 30 ER7b ExonRegion 0 17.81 48.76 28.69 63.79 33.27 92.59 57.26 60.50 128.88 77.49 233.82 64.52 101.35 82.69 34.56 29.69 38.86 178.61 72.85 162.23 62.52 171.85 156.03 31 E7a_E8b KnownJunction 0 9.93 42.89 18.01 80.58 27.93 95.85 56.26 62.31 120.14 64.17 240.75 101.58 99.34 79.99 36.71 21.87 40.86 128.92 66.64 126.36 58.38 249.04 130.86 32 E7a_E9a NovelJunction 0 0.00 10.85 3.37 13.48 0.00 8.01 11.57 14.05 15.86 13.75 72.23 12.60 13.47 14.66 5.19 0.00 22.63 25.54 3.76 12.53 5.68 5.76 7.85 33 E7a_E11a KnownJunction 0 0.00 20.06 2.60 11.29 0.00 7.10 10.25 6.20 19.50 13.70 12.27 0.00 0.00 2.88 0.00 0.00 0.00 36.60 8.75 43.02 0.00 5.82 4.01 34 ER8a ExonRegion 0 1.48 1.91 0.24 3.68 0.42 1.17 3.30 3.42 2.89 1.52 2.89 1.15 3.73 0.80 0.45 0.25 1.75 3.90 0.73 7.95 3.56 2.96 3.64 35 E8_Ab KnownBoundary 0 0.00 2.57 0.00 1.90 0.00 0.00 4.28 9.86 2.92 1.48 0.00 0.00 0.00 0.00 0.00 0.00 4.77 2.20 0.00 2.43 3.15 0.00 0.00 36 ER8b ExonRegion 0 11.18 43.49 26.64 56.42 50.11 111.49 72.37 68.22 118.63 75.47 230.87 79.95 119.97 66.04 23.31 24.62 30.83 154.56 55.31 98.69 77.86 170.71 184.01 37 E8a_E9a KnownJunction 1 9.19 66.83 28.09 37.82 38.20 106.53 92.12 46.74 112.99 66.40 222.58 79.98 155.35 76.76 14.71 51.35 22.63 138.12 90.26 95.11 79.01 121.73 125.06 38 ER9a ExonRegion 0 13.95 65.10 24.89 32.86 30.83 92.05 65.83 56.80 93.07 71.37 215.21 48.05 142.35 73.66 32.57 32.99 50.30 121.72 67.52 103.15 72.13 137.81 134.38 39 E9a_E10a KnownJunction 1 16.52 74.99 26.11 35.16 27.59 84.16 48.09 73.40 103.67 92.86 174.99 38.41 108.92 71.81 47.84 7.78 58.63 116.36 63.44 94.53 59.18 168.45 125.40 40 ER10a ExonRegion 0 17.22 49.10 29.75 42.29 27.32 71.18 46.40 69.59 102.55 94.37 241.69 57.50 108.13 81.31 27.16 23.09 36.51 141.47 66.21 112.15 89.36 172.03 173.78 41 E10a_E11a KnownJunction 1 16.82 60.06 24.98 77.11 39.13 118.00 76.80 89.54 138.45 157.01 402.68 30.76 121.10 82.76 30.53 30.42 42.45 204.86 216.76 154.55 112.31 318.11 326.77 42 ER11a ExonRegion 0 12.96 76.54 28.23 68.30 26.18 154.08 87.60 77.27 140.75 129.02 371.64 112.03 169.62 92.59 26.52 19.72 50.36 169.31 88.30 166.45 81.21 200.98 212.70 43 E11a_E12a KnownJunction 1 24.52 68.94 22.89 65.33 16.13 117.15 63.46 62.47 150.90 131.76 266.01 122.59 177.42 77.29 4.45 7.86 31.23 195.58 74.45 150.14 61.34 165.88 120.28 44 ER12a ExonRegion 0 11.46 43.43 27.96 52.38 22.94 70.69 49.21 51.37 120.84 98.80 268.05 112.92 183.60 67.31 31.17 13.71 38.60 155.46 82.19 140.79 86.81 182.90 168.81 45 E12_Da KnownBoundary 0 6.89 6.71 12.03 24.91 4.07 9.82 2.25 17.54 31.42 13.57 33.90 24.46 32.79 24.72 6.30 3.59 3.46 20.69 12.61 20.90 33.73 8.82 37.05 46 E12a_E13a KnownJunction 0 0.00 63.15 21.14 39.99 10.95 33.96 42.88 34.83 84.95 69.49 178.36 77.43 180.02 43.32 37.83 21.02 21.88 85.02 25.51 91.34 70.06 104.53 120.11 47 ER12b ExonRegion 0 2.33 5.24 2.85 6.88 1.54 4.94 0.63 6.06 13.82 5.02 14.97 8.44 11.29 11.26 4.57 3.12 5.71 6.64 5.40 10.17 18.53 2.19 17.97 48 I12 Intron 0 10.77 13.01 8.93 20.79 16.39 11.97 15.36 16.48 21.14 12.87 36.58 17.96 28.50 10.36 6.42 2.36 7.75 17.48 15.12 19.48 11.64 15.66 19.65 49 I12_AR1 ActiveIntronRegion 0 6.52 14.29 5.44 10.40 8.38 10.85 11.49 12.30 15.18 8.58 24.87 12.17 11.03 9.27 7.90 3.87 6.11 12.15 6.03 17.77 16.89 6.27 12.78 50 I12_SR1 SilentIntronRegion 0 10.58 19.06 5.28 10.58 5.85 9.01 13.15 17.46 17.06 15.45 34.79 19.08 21.54 10.63 9.34 2.27 7.27 20.58 9.39 22.57 7.73 14.76 23.84 51 I12_AR2 ActiveIntronRegion 0 8.65 13.50 8.00 18.37 13.04 9.63 12.63 12.96 17.03 11.63 39.35 10.72 12.30 11.44 6.34 4.31 8.04 22.75 18.79 17.38 12.92 12.88 22.31 52 I12_SR3 SilentIntronRegion 0 18.10 19.35 12.87 29.32 22.04 14.15 20.40 24.52 27.83 18.91 41.90 26.44 45.60 13.53 8.69 2.17 9.12 28.56 23.30 26.93 15.97 22.06 26.61 53 I12_AR4 ActiveIntronRegion 0 7.62 9.98 8.74 21.88 22.48 22.10 18.74 15.16 27.09 13.34 37.01 24.99 30.32 8.94 4.99 1.63 5.36 6.50 12.53 12.56 5.08 18.94 17.66 54 I12_SR4 SilentIntronRegion 0 23.28 2.87 1.73 6.97 7.56 10.36 13.55 4.58 5.09 1.55 17.62 2.04 16.83 4.11 3.75 0.00 0.58 4.35 3.56 5.63 3.63 10.91 11.75 55 I12_AR5 ActiveIntronRegion 0 14.97 11.72 6.05 20.56 16.34 11.22 13.02 19.41 21.22 8.75 47.52 23.98 47.05 11.10 9.08 1.34 7.41 20.61 14.81 16.86 16.11 18.46 19.66 56 ER13a ExonRegion 0 26.91 57.39 28.85 42.70 31.06 88.00 60.55 52.02 94.43 74.07 191.62 93.61 174.80 66.99 29.66 8.53 30.15 157.16 47.80 130.53 63.00 109.31 122.64 57 E13_Da KnownBoundary 0 9.33 18.42 8.31 7.33 4.07 10.56 15.55 3.86 8.39 11.04 19.58 12.30 6.82 2.47 0.00 0.00 0.00 11.36 7.91 17.32 2.47 2.63 11.27 58 E13a_E14a KnownJunction 0 32.15 68.01 22.47 46.21 56.96 130.95 72.29 35.69 70.08 54.80 173.25 82.83 204.53 63.81 28.06 15.04 29.92 94.02 26.17 95.36 66.53 119.65 148.19 59 ER13b ExonRegion 0 19.24 7.46 6.80 18.94 6.72 5.00 12.47 14.06 14.43 10.61 13.84 6.17 6.50 2.59 5.44 1.43 3.71 11.53 5.91 9.77 5.24 6.96 8.36 60 ER14a ExonRegion 0 25.32 63.18 24.22 59.27 31.40 83.89 61.05 44.74 87.63 84.56 201.97 65.60 134.64 84.09 27.53 16.37 23.01 128.07 32.12 105.04 55.40 117.38 130.04 61 E14a_E15a KnownJunction 0 13.56 50.52 37.61 51.04 32.77 64.79 55.78 40.09 84.75 68.34 139.51 67.67 48.70 88.29 19.66 18.29 19.92 95.88 24.85 90.89 68.82 130.86 80.75 62 I14 Intron 1 8.69 18.96 10.13 21.57 17.33 15.96 18.02 26.27 30.33 18.09 72.59 15.39 28.46 16.33 9.32 4.83 7.71 26.06 14.59 29.00 12.90 20.04 24.49 63 I14_AR1 ActiveIntronRegion 1 5.02 17.03 6.14 14.85 9.86 12.92 18.71 18.51 19.92 10.58 55.72 4.53 4.53 12.09 6.92 7.09 6.49 19.11 12.63 21.18 12.17 10.54 18.27 64 I14_SR2 SilentIntronRegion 1 9.76 21.17 12.13 24.82 20.06 18.15 19.18 30.18 35.58 21.79 82.73 19.37 33.97 17.87 10.66 4.50 9.04 30.25 15.99 32.84 13.96 23.05 26.02 65 I14_AR2 ActiveIntronRegion 1 10.69 27.38 6.26 17.80 15.42 22.69 9.38 24.26 28.53 15.04 64.61 5.03 18.35 12.22 5.40 7.24 3.38 31.57 11.19 16.97 25.15 28.49 25.29 66 E15_Aa NovelBoundary 0 10.15 21.64 15.46 45.72 12.90 15.33 12.41 41.48 39.99 23.42 90.02 13.05 31.49 11.42 8.90 8.12 4.77 47.34 4.80 65.77 16.43 44.27 24.84 67 ER15a ExonRegion 0 22.45 94.34 33.66 63.78 39.52 77.68 55.63 66.29 131.31 110.99 279.54 48.52 78.11 68.70 20.42 21.10 34.35 168.06 31.29 116.01 88.47 129.34 135.22 68 E15a_E16a KnownJunction 0 15.85 130.83 44.62 96.09 56.03 140.37 101.04 117.43 183.24 150.67 305.08 70.97 153.40 93.53 36.34 31.62 54.79 198.73 62.97 176.99 114.72 167.11 252.76 69 ER16a ExonRegion 0 52.93 99.51 52.01 112.30 87.43 167.14 105.64 101.78 179.11 134.00 356.79 90.86 138.05 120.15 38.58 29.79 44.37 221.23 66.15 153.58 108.80 196.42 213.27 70 E16a_E17a KnownJunction 1 25.41 107.88 39.35 120.10 99.92 193.24 99.28 107.16 201.56 142.88 341.98 64.97 74.18 118.72 49.20 29.14 46.28 180.99 92.52 182.48 73.82 200.23 256.77 71 ER17a ExonRegion 0 19.75 107.78 49.70 109.79 116.69 153.43 89.66 97.56 197.55 161.71 333.00 111.84 88.85 107.19 53.03 29.23 55.38 196.37 76.80 166.55 83.86 223.40 245.05 72 ER17b ExonRegion 0 42.68 125.07 55.88 122.31 87.68 146.94 90.10 107.41 200.15 158.07 370.97 124.67 166.08 104.67 39.46 14.97 36.94 188.57 84.17 141.22 69.36 202.88 186.44 73 E17b_E18a KnownJunction 1 91.94 107.88 31.96 119.86 116.64 200.57 116.41 110.00 181.62 138.18 346.93 116.59 97.88 110.13 43.14 10.68 50.86 170.87 83.30 134.80 102.92 141.76 141.87 74 E18_Aa NovelBoundary 0 41.71 6.64 15.61 20.91 16.47 23.23 57.76 5.87 8.01 3.87 13.79 6.00 0.00 11.65 0.00 0.00 4.30 24.50 0.00 27.42 5.56 14.14 38.41 75 ER18a ExonRegion 0 60.56 139.15 71.77 156.64 99.74 198.02 106.34 143.05 206.64 179.08 363.01 111.84 214.16 113.06 40.82 23.97 43.51 190.22 87.40 168.48 95.55 209.52 214.78 76 E18_Da KnownBoundary 1 231.15 483.60 134.15 250.08 147.28 260.08 169.41 225.50 290.51 228.08 420.95 48.17 123.69 100.59 43.02 31.53 24.87 163.28 79.34 191.05 93.65 269.24 229.03 77 ER18b ExonRegion 0 161.15 279.82 177.10 310.23 191.42 248.93 146.08 196.44 219.62 184.37 272.65 95.60 139.86 70.77 60.07 19.74 31.05 144.01 76.95 141.88 58.60 225.96 163.92