Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 NOS1AP Gene 0 1.69 26.41 9.67 55.98 29.53 23.27 22.19 17.20 98.74 68.52 0.14 0.57 0.09 0.01 0.03 0.20 7.53 20.73 104.14 70.05 2.74 2.04 2.32 2 361897 Transcript 0 1.34 20.85 13.95 63.09 23.66 26.26 28.99 16.63 116.07 105.36 0.35 1.24 0.24 0.04 0.43 0.14 24.16 31.39 165.23 106.30 8.76 5.85 5.02 3 464284 Transcript 0 0.16 1.20 0.00 2.14 0.70 1.08 1.83 0.17 4.12 2.30 0.00 0.00 0.00 0.00 0.00 0.00 1.52 2.20 9.47 4.59 1.30 0.28 0.97 4 430120 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 493151 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 431696 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 454693 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 420220 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 367932 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 ER1a ExonRegion 0 0.00 8.61 3.84 12.46 5.60 8.17 7.74 4.05 28.78 30.08 0.00 0.19 0.00 0.12 0.00 0.00 12.32 14.04 44.17 39.64 5.33 0.66 2.99 11 E1_Da NovelBoundary 0 0.00 0.00 0.00 0.00 4.33 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 13.46 0.00 0.00 0.00 0.00 0.00 0.00 12 E1a_E2a KnownJunction 0 0.00 13.02 20.82 58.90 26.23 18.97 33.21 11.83 70.80 78.92 0.00 7.65 0.00 0.00 0.00 0.00 25.71 41.74 113.79 86.35 8.59 5.57 0.00 13 ER2a ExonRegion 0 0.00 14.80 12.30 53.70 22.30 26.92 19.77 14.43 84.31 85.52 0.00 1.74 0.00 0.00 0.56 0.00 38.69 31.18 123.52 105.29 11.20 2.81 5.10 14 E2a_E3a KnownJunction 0 0.00 5.20 11.47 69.12 32.60 21.12 33.92 18.65 105.73 107.26 0.00 0.00 0.00 0.00 5.56 0.00 39.36 28.35 142.50 147.14 14.15 6.31 12.63 15 ER3a ExonRegion 0 0.68 20.69 8.88 61.45 41.69 23.27 24.40 17.92 109.46 102.72 0.00 2.37 0.00 0.63 1.15 0.00 32.48 20.31 194.24 106.45 7.35 6.18 4.48 16 E3a_E4a KnownJunction 0 3.78 15.33 4.35 34.49 21.31 31.69 25.53 5.71 62.88 59.71 0.00 0.00 0.00 0.00 0.00 0.00 12.62 15.42 166.03 29.53 3.15 3.06 4.18 17 ER4a ExonRegion 0 0.60 17.86 11.56 49.14 22.27 28.35 41.35 11.80 85.01 84.87 0.00 0.00 2.66 0.00 0.00 0.00 18.33 30.89 191.85 102.27 7.18 3.13 4.92 18 E4a_E5a KnownJunction 0 0.00 9.54 22.18 86.34 12.05 18.68 48.71 22.96 146.67 121.17 0.00 0.00 0.00 0.00 0.00 0.00 21.32 40.87 220.99 144.07 12.97 3.12 11.78 19 ER5a ExonRegion 0 1.81 30.47 18.62 81.35 42.59 45.05 47.19 21.17 134.88 138.09 0.00 1.71 0.00 0.00 0.00 0.00 33.92 43.50 229.08 122.06 10.21 7.89 4.28 20 E5a_E6a KnownJunction 0 0.00 55.06 16.62 73.18 24.70 45.94 57.46 21.89 138.51 146.61 0.00 5.85 0.00 0.00 0.00 0.00 28.99 41.00 254.78 160.11 6.30 14.70 0.00 21 ER6a ExonRegion 0 0.89 22.47 14.64 68.57 23.44 24.42 29.13 13.74 124.87 115.22 1.24 1.52 1.39 0.00 0.00 0.00 35.73 35.50 180.42 107.46 6.38 8.47 8.04 22 E6a_E7a KnownJunction 0 0.00 36.38 14.84 68.62 14.69 17.89 15.32 12.32 104.54 103.96 2.21 0.00 0.00 0.00 0.00 0.00 20.10 37.81 226.92 110.19 11.61 6.25 4.35 23 ER7a ExonRegion 0 1.03 17.22 13.58 74.93 11.57 21.45 23.37 11.34 152.23 142.64 1.82 0.00 0.00 0.00 0.00 0.91 29.04 33.71 147.56 116.52 13.46 11.04 7.33 24 E7a_E8a KnownJunction 0 3.78 27.30 14.28 76.01 8.23 31.35 15.50 12.82 164.81 129.88 0.00 0.00 0.00 0.00 0.00 0.00 21.97 30.10 174.41 124.19 12.54 3.12 3.93 25 ER8a ExonRegion 0 2.69 14.53 15.51 59.08 18.34 25.79 19.25 16.66 122.27 111.63 0.63 0.00 0.00 0.00 0.00 0.86 29.06 40.75 127.88 102.01 11.27 6.74 5.97 26 E8a_E10b KnownJunction 0 3.04 8.81 21.47 62.56 19.10 14.65 10.29 32.33 125.17 92.73 0.00 0.00 0.00 0.00 0.00 0.00 9.54 17.87 72.00 83.41 5.81 7.04 3.67 27 E9_Aa NovelBoundary 0 0.00 2.96 0.00 18.81 4.16 0.00 13.56 0.00 18.66 6.04 0.00 0.00 0.00 0.00 0.00 0.00 4.49 0.00 8.66 14.45 5.37 0.00 0.00 28 ER9a ExonRegion 0 0.33 2.41 0.00 4.28 1.41 2.17 3.65 0.34 8.24 3.37 0.00 0.00 0.00 0.00 0.00 0.00 3.04 2.66 9.81 6.76 2.61 0.56 1.93 29 E9a_E10b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.74 9.13 2.43 0.00 0.00 0.00 30 I9_SR2 SilentIntronRegion 0 0.43 17.83 2.23 16.41 3.84 3.67 9.33 2.29 21.28 10.80 0.13 0.00 0.00 0.00 0.00 0.00 1.13 2.00 10.46 11.49 1.85 1.28 1.24 31 E10_Aa NovelBoundary 0 0.00 21.51 2.69 18.11 6.96 19.02 25.92 9.24 35.39 20.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.28 40.46 0.00 6.25 0.00 32 ER10a ExonRegion 0 0.22 8.80 1.39 9.14 4.41 3.64 6.46 2.98 15.35 9.92 0.00 0.93 0.00 0.00 0.00 0.06 2.85 3.77 12.94 13.73 0.81 0.97 1.98 33 E10_Ab KnownBoundary 0 0.00 0.00 0.00 1.96 0.00 0.00 4.06 0.00 4.83 4.19 0.00 0.00 0.00 0.00 0.00 0.00 3.55 6.26 7.15 5.56 0.00 0.00 0.00 34 E10_Ac KnownBoundary 0 0.00 5.59 0.00 1.80 11.80 5.22 0.00 0.00 5.84 3.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.78 22.49 0.00 3.15 0.00 0.00 35 ER10b ExonRegion 0 2.12 23.05 15.52 43.61 13.38 18.34 11.92 24.20 90.58 88.31 0.00 0.00 0.00 0.00 0.00 0.00 9.90 20.33 116.80 85.11 6.61 13.20 2.94 36 ER10c ExonRegion 0 1.83 13.86 14.27 56.52 12.34 19.64 15.01 25.48 98.75 109.76 0.00 0.00 0.00 0.00 0.13 1.65 37.70 45.51 126.16 99.43 9.13 7.79 7.23 37 E10a_E12a KnownJunction 0 0.00 2.70 17.33 56.20 34.72 26.75 21.99 39.72 139.96 132.56 0.00 0.00 0.00 0.00 4.45 3.67 20.57 98.99 150.40 118.95 13.65 8.82 12.63 38 ER11a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39 ER11b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 40 ER12a ExonRegion 0 2.12 13.72 13.37 59.25 16.68 23.26 16.47 24.58 96.47 108.83 0.64 0.00 0.00 0.00 0.55 0.23 41.73 57.58 156.19 90.14 12.91 7.15 11.00 41 E12_Da KnownBoundary 0 0.00 5.99 0.00 27.10 0.00 13.51 8.61 6.53 52.05 44.51 0.00 0.00 0.00 0.00 0.00 0.00 8.70 15.92 21.37 43.53 0.00 0.00 0.00 42 E12a_E13a KnownJunction 0 0.00 0.00 1.57 0.00 7.13 8.29 4.24 6.20 3.10 21.81 0.00 0.00 0.00 0.00 0.00 0.00 25.90 4.52 29.37 3.26 2.97 7.59 6.57 43 E12_Db KnownBoundary 0 0.00 11.31 9.46 23.94 17.06 5.79 12.01 7.48 49.13 37.12 0.00 0.00 0.00 0.00 0.00 0.00 4.77 27.07 86.31 49.66 0.00 0.00 4.35 44 ER12b ExonRegion 0 0.25 7.54 5.98 34.39 11.65 10.25 13.32 10.47 68.15 55.73 0.00 0.00 0.00 0.00 0.00 0.00 8.74 26.85 62.21 55.94 0.26 0.00 2.94 45 ER12c ExonRegion 0 3.12 9.52 6.14 22.79 10.79 19.06 18.22 7.48 57.07 46.67 0.00 0.00 2.16 0.00 0.00 0.00 3.12 25.24 72.25 58.69 1.09 0.00 0.77 46 E12_Ab KnownBoundary 0 6.96 9.27 3.64 36.16 11.80 24.19 24.51 11.09 72.19 63.69 0.00 0.00 0.00 0.00 0.00 0.00 8.88 21.89 72.38 92.68 6.24 0.00 0.00 47 ER12d ExonRegion 0 2.38 12.03 4.92 37.70 11.31 13.66 11.79 11.64 71.98 66.66 0.00 0.00 0.00 0.00 0.00 1.00 6.58 24.84 89.32 71.89 0.83 0.70 0.00 48 E12_Dc KnownBoundary 0 0.00 27.43 4.76 49.34 6.71 16.07 14.71 19.88 92.10 74.78 0.00 0.00 0.00 0.00 0.00 0.00 7.85 24.29 101.74 103.55 0.00 0.00 0.00 49 E12c_E13a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50 ER12e ExonRegion 0 0.00 16.56 3.30 44.03 7.12 9.66 11.25 11.70 75.10 70.62 0.00 0.00 1.26 0.00 0.00 0.00 3.07 18.02 62.57 71.31 0.31 0.00 0.00 51 E12_Dd KnownBoundary 0 0.00 34.14 9.73 59.23 11.88 15.22 10.16 10.60 88.37 72.20 0.00 0.00 6.66 0.00 0.00 0.00 0.00 14.55 70.31 44.87 2.41 0.00 0.00 52 ER12f ExonRegion 0 3.66 62.01 21.10 128.27 72.64 51.51 45.91 38.63 210.92 128.44 0.16 0.67 0.05 0.00 0.00 0.18 2.29 36.22 208.73 135.29 1.61 1.48 1.44 53 E12_De KnownBoundary 0 0.00 83.34 21.50 97.06 91.17 111.13 31.62 62.10 304.31 181.13 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42.86 184.95 117.54 0.00 0.00 4.01 54 ER12g ExonRegion 0 4.54 37.23 12.23 82.68 55.52 42.77 40.68 33.18 212.32 140.12 0.00 0.00 0.00 0.00 0.00 0.67 1.49 30.53 198.78 120.38 1.49 3.29 1.66 55 E12_Df NovelBoundary 0 0.00 115.11 14.37 72.45 46.69 40.09 50.92 19.18 150.20 179.09 0.00 0.00 0.00 0.00 0.00 0.00 4.68 31.67 226.74 86.03 0.00 6.00 0.00 56 I12 Intron 0 1.11 17.67 6.91 39.24 34.30 30.20 32.13 10.64 91.89 81.00 0.04 0.15 0.00 0.00 0.00 0.00 2.11 31.08 165.58 67.99 1.66 1.19 1.74 57 I12_SR1 SilentIntronRegion 0 1.24 15.82 6.62 33.52 31.51 29.29 30.42 10.06 84.05 72.64 0.06 0.19 0.00 0.00 0.00 0.00 1.86 27.88 155.49 63.68 1.69 1.09 1.82 58 I12_AR1 ActiveIntronRegion 0 0.66 24.32 7.99 59.79 44.37 33.51 38.32 12.70 120.13 111.11 0.00 0.00 0.00 0.00 0.00 0.00 2.98 42.57 202.02 83.56 1.55 1.56 1.47 59 Ix Intron 0 0.96 17.27 3.87 49.87 32.44 30.57 20.37 16.39 106.97 114.10 0.00 0.00 0.00 0.00 0.00 0.45 2.25 36.19 172.11 77.55 1.34 0.47 1.34 60 Ix_SR1 SilentIntronRegion 0 0.97 17.32 3.89 50.01 32.54 30.66 20.42 16.44 107.28 114.44 0.00 0.00 0.00 0.00 0.00 0.45 2.26 36.29 172.61 77.78 1.34 0.48 1.34 61 Ix Intron 0 1.27 34.65 12.20 74.11 60.74 40.52 45.12 23.11 128.01 114.54 0.23 0.21 0.00 0.00 0.00 0.00 2.78 41.54 187.97 93.14 1.46 2.89 1.24 62 Ix_SR1 SilentIntronRegion 0 1.28 34.73 12.23 74.28 60.88 40.61 45.23 23.17 128.32 114.81 0.23 0.22 0.00 0.00 0.00 0.00 2.79 41.64 188.40 93.36 1.46 2.89 1.24 63 I12 Intron 0 4.96 67.36 14.43 149.64 117.43 63.01 59.75 32.53 172.96 169.11 0.08 0.28 0.00 0.00 0.00 0.12 2.23 38.00 202.31 102.59 1.22 1.74 1.17 64 I12_SR1 SilentIntronRegion 0 0.00 39.47 5.33 60.45 42.42 25.37 28.73 7.91 85.36 67.20 0.00 0.00 0.00 0.00 0.00 0.00 4.16 15.02 125.76 67.49 2.08 2.39 0.00 65 I12_AR1 ActiveIntronRegion 0 5.72 64.30 9.84 154.99 114.38 66.21 57.74 30.05 168.44 167.95 0.35 0.00 0.00 0.00 0.00 0.00 0.40 32.42 223.98 103.29 0.79 3.67 1.59 66 I12_AR2 ActiveIntronRegion 0 7.08 79.42 17.91 169.90 135.70 63.31 70.39 34.87 191.38 179.49 0.00 0.69 0.00 0.00 0.00 0.13 2.87 40.78 196.94 125.61 1.38 0.48 0.73 67 I12_SR3 SilentIntronRegion 0 3.27 68.11 16.05 148.29 122.97 72.75 60.31 38.35 180.15 183.24 0.00 0.07 0.00 0.00 0.00 0.22 2.92 44.27 221.62 87.80 1.44 1.88 1.41 68 I12_AR3 ActiveIntronRegion 0 0.53 16.66 7.54 69.92 35.79 26.18 17.52 14.62 98.05 108.72 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25.74 112.90 52.72 0.03 1.48 2.08 69 ER13a ExonRegion 0 0.00 0.00 1.31 0.89 0.87 0.96 1.59 0.98 2.09 10.50 0.44 0.00 0.00 0.00 0.00 0.00 12.79 2.22 5.96 0.69 3.43 2.19 0.86 70 E13_Da KnownBoundary 0 3.78 21.31 5.71 16.08 28.52 39.24 2.08 9.16 37.21 24.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.12 45.74 9.59 0.00 0.00 0.00 71 ER13b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 1.34 0.91 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 72 E13b_E14a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 73 ER14a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.20 0.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 74 E14_Da KnownBoundary 0 0.00 48.68 18.57 117.70 60.61 62.63 36.04 31.09 96.50 118.14 0.00 0.00 0.00 0.00 0.00 0.00 10.94 50.41 116.52 55.29 0.00 0.00 3.50 75 ER14b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00