Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 NTRK1 Gene 0 0.89 0.41 18.30 25.45 75.72 674.55 6.39 347.76 540.70 295.86 0.07 0.12 0.00 0.10 0.48 0.10 0.28 21.27 79.41 4.74 0.67 8.89 6.64 2 497019 Transcript 0 0.00 0.00 0.00 1.95 6.53 15.99 0.36 4.56 15.59 24.28 0.00 0.00 0.00 0.00 0.00 0.00 0.87 2.73 2.16 1.14 0.00 1.12 8.67 3 368197 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 489021 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 392302 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.27 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 368196 Transcript 0 0.00 0.00 0.21 0.00 3.38 45.28 0.00 1.22 3.12 3.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.36 9.65 0.00 0.00 0.00 0.72 7 358660 Transcript 0 0.00 0.00 12.06 27.82 113.68 966.86 3.19 325.12 505.62 136.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.64 2.92 1.80 0.00 0.00 0.00 8 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 1.44 0.00 0.71 0.00 11.62 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.74 0.99 0.00 2.28 0.00 2.24 17.34 9 E1_Ab KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.36 0.00 0.00 0.00 0.00 0.00 10 E1_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 4.33 0.00 2.03 0.00 5.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.60 0.00 0.00 0.00 0.00 11 ER1b ExonRegion 0 0.00 0.00 0.00 0.00 2.42 0.00 0.66 0.00 10.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.10 1.44 2.09 0.00 0.00 0.00 0.00 12 ER1c ExonRegion 0 0.00 0.00 0.00 0.00 1.05 0.07 2.03 0.40 5.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.88 0.00 0.00 0.00 3.72 13 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15.37 14 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.27 0.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 ER3a ExonRegion 0 0.00 0.00 0.00 0.92 2.42 10.73 1.20 31.36 21.88 15.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.16 3.13 0.00 0.00 1.88 7.59 16 E3_Da NovelBoundary 0 10.45 0.00 4.85 28.04 55.77 215.27 34.76 441.50 304.08 168.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11.57 53.74 12.59 0.00 0.00 0.00 17 E3a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.10 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.05 0.00 0.00 0.00 0.00 18 Ix Intron 0 0.56 0.54 3.38 3.76 12.02 125.02 15.39 170.17 114.30 56.00 0.00 0.00 0.00 0.30 0.00 0.00 0.00 5.58 14.31 5.06 0.58 0.00 2.33 19 Ix_AR1 ActiveIntronRegion 0 0.57 0.55 3.45 3.84 12.27 127.55 15.72 173.60 116.60 57.14 0.00 0.00 0.00 0.31 0.00 0.00 0.00 5.70 14.61 5.17 0.59 0.00 2.38 20 Ix Intron 0 0.00 0.18 2.07 9.03 14.47 92.24 10.97 157.87 90.66 43.51 0.17 0.00 0.00 0.00 0.00 0.26 0.29 2.08 10.55 1.67 0.19 0.18 2.30 21 Ix_SR1 SilentIntronRegion 0 0.00 0.18 2.08 9.06 14.52 92.56 11.00 158.40 90.97 43.66 0.17 0.00 0.00 0.00 0.00 0.26 0.29 2.09 10.59 1.68 0.19 0.18 2.31 22 Ix Intron 0 0.47 0.45 1.20 5.80 7.06 39.51 3.49 81.54 76.47 42.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.04 11.20 1.87 0.00 0.46 0.65 23 Ix_AR1 ActiveIntronRegion 0 0.47 0.45 1.21 5.85 7.12 39.83 3.52 82.24 77.10 42.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.07 11.30 1.89 0.00 0.46 0.65 24 Ix Intron 0 0.27 0.00 1.38 3.71 11.71 48.09 8.09 73.31 86.86 43.58 0.00 0.00 0.00 0.00 0.00 0.09 0.10 2.49 11.03 3.95 0.07 0.20 0.55 25 Ix_SR1 SilentIntronRegion 0 0.27 0.00 1.38 3.71 11.72 48.15 8.10 73.40 86.97 43.64 0.00 0.00 0.00 0.00 0.00 0.09 0.10 2.49 11.04 3.96 0.07 0.20 0.56 26 I3_AR1 ActiveIntronRegion 0 0.00 0.00 1.36 3.46 3.51 25.44 2.47 79.70 67.58 28.47 0.00 0.00 0.35 0.00 0.00 0.00 0.00 1.42 10.30 3.79 0.00 0.13 0.53 27 ER4a ExonRegion 0 0.00 0.00 0.21 0.00 3.38 45.28 0.00 1.22 3.12 3.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.36 9.65 0.00 0.00 0.00 0.72 28 E4_Ab KnownBoundary 0 0.00 0.00 0.00 1.86 4.24 171.66 0.00 13.10 36.11 22.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.07 41.32 0.00 0.00 0.00 3.33 29 ER4b ExonRegion 0 0.40 0.00 2.26 2.94 7.78 116.51 0.00 69.33 102.63 75.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.88 40.53 1.56 0.00 2.90 3.13 30 E4a_E5a KnownJunction 0 0.00 0.00 8.40 4.06 33.45 263.14 0.00 254.33 375.37 254.17 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.28 43.67 5.82 0.00 5.63 0.00 31 ER5a ExonRegion 0 0.00 0.00 6.19 8.21 55.16 513.49 2.24 289.50 432.64 258.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25.13 64.39 7.46 0.00 3.08 3.92 32 E5a_E6a KnownJunction 0 0.00 0.00 10.17 28.70 66.30 938.38 6.58 351.18 522.91 311.81 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.66 66.45 0.00 0.00 5.20 3.16 33 ER6a ExonRegion 0 0.00 0.00 12.39 21.60 73.81 741.26 7.67 324.78 571.52 330.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17.25 67.11 8.10 0.00 9.26 1.55 34 E6a_E7a KnownJunction 0 0.00 0.00 12.89 23.21 47.71 619.93 13.34 371.19 663.88 402.71 0.00 0.00 0.00 0.00 0.00 0.00 4.68 30.84 112.10 6.33 0.00 14.76 7.51 35 ER7a ExonRegion 0 0.00 0.00 15.38 28.56 43.16 542.25 6.12 384.04 675.25 388.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35.51 107.89 4.13 1.63 11.81 11.15 36 E7a_E8a KnownJunction 0 0.00 0.00 12.51 28.70 26.91 623.05 3.31 440.03 654.77 359.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24.95 84.61 0.00 0.00 10.29 15.28 37 ER8a ExonRegion 0 0.09 0.00 9.64 28.97 72.10 549.20 5.05 327.61 541.32 321.32 0.68 0.00 0.00 0.00 0.00 0.00 1.15 25.01 99.29 4.46 1.34 8.32 3.32 38 E8a_E9a KnownJunction 0 0.00 0.00 15.17 38.39 104.84 683.02 8.83 444.05 662.81 345.96 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28.23 96.00 0.00 2.72 25.41 8.71 39 ER9a ExonRegion 0 1.97 0.00 12.64 14.37 76.38 710.95 4.63 305.98 496.99 274.48 0.69 0.00 0.00 0.00 0.00 0.00 1.18 19.11 69.99 4.55 0.99 9.95 6.18 40 E9a_E10a KnownJunction 0 3.33 0.00 9.67 16.65 89.22 1007.72 6.76 403.51 723.55 318.05 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38.34 63.53 0.00 0.00 9.31 0.00 41 E9a_E11a KnownJunction 0 0.00 0.00 0.00 3.90 11.63 31.97 0.00 9.12 19.56 48.57 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.48 4.33 0.00 0.00 0.00 0.00 42 I9_AR1 ActiveIntronRegion 0 0.00 0.00 0.00 0.61 20.65 44.96 2.12 10.20 18.46 5.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.01 7.49 0.00 0.00 0.00 0.00 43 ER10a ExonRegion 0 0.22 0.00 14.11 16.33 88.20 990.03 7.62 390.58 628.90 324.89 0.00 0.00 0.00 0.00 0.57 0.00 0.00 22.05 95.66 5.20 0.85 12.69 5.03 44 E10a_E11a KnownJunction 0 0.00 0.00 11.59 10.35 91.68 1025.60 8.35 335.41 617.64 309.23 0.00 0.00 0.00 0.00 4.45 0.00 0.00 28.56 85.65 12.08 0.00 6.25 4.01 45 I10 Intron 0 0.55 0.00 0.66 7.04 19.10 70.47 3.83 46.89 55.69 37.92 0.00 0.00 0.40 0.00 0.32 0.00 0.00 2.04 8.24 0.77 0.23 1.29 2.28 46 I10_SR1 SilentIntronRegion 0 0.55 0.00 0.66 7.05 19.14 70.61 3.84 46.99 55.80 38.00 0.00 0.00 0.40 0.00 0.32 0.00 0.00 2.05 8.25 0.77 0.23 1.30 2.28 47 ER11a ExonRegion 0 0.67 0.29 8.78 16.90 62.54 704.68 7.63 288.86 537.15 315.11 0.00 0.00 0.00 0.42 0.18 0.00 0.00 14.59 94.93 5.88 0.47 9.18 5.09 48 E11_Da KnownBoundary 0 0.00 3.35 8.28 25.84 109.25 1073.02 7.99 467.75 785.32 427.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 41.95 99.58 6.39 2.97 13.17 10.93 49 ER11b ExonRegion 0 0.65 0.97 17.90 31.72 106.56 1147.07 11.71 425.90 717.42 396.19 0.00 0.00 0.00 0.41 0.63 0.00 0.04 32.69 118.88 5.26 0.90 11.46 7.77 50 E11_Db NovelBoundary 0 0.00 0.00 6.65 6.43 42.11 490.80 3.84 127.04 202.40 168.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.46 36.52 0.00 0.00 0.00 0.00 51 E11b_E12a KnownJunction 0 0.00 0.00 8.31 25.44 157.98 926.74 3.93 232.19 414.49 108.20 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.77 0.00 0.00 0.00 0.00 0.00 52 E11b_E13a KnownJunction 0 0.00 0.00 3.67 4.43 36.08 117.60 12.41 23.29 14.00 112.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.83 80.10 0.00 0.00 18.00 7.26 53 I11 Intron 0 0.30 0.00 6.98 14.10 49.28 284.73 3.56 135.37 189.57 151.81 0.00 0.00 0.00 0.00 0.58 0.00 0.00 17.83 40.16 1.21 0.00 0.59 0.83 54 I11_SR1 SilentIntronRegion 0 0.30 0.00 7.02 14.18 49.55 286.32 3.58 136.12 190.61 152.64 0.00 0.00 0.00 0.00 0.58 0.00 0.00 17.92 40.39 1.21 0.00 0.59 0.84 55 E12a_E13a KnownJunction 0 0.00 0.00 13.36 23.81 69.95 920.32 2.25 333.73 474.73 128.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7.38 4.52 3.26 0.00 0.00 0.00 56 ER12a ExonRegion 0 0.00 0.00 14.50 34.22 113.12 1053.52 3.38 409.45 627.64 172.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.78 4.25 2.13 0.00 0.00 0.00 57 I12 Intron 0 0.00 0.00 3.29 4.87 34.52 222.27 3.97 84.23 98.29 110.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.92 25.80 1.28 0.00 0.00 0.00 58 I12_SR1 SilentIntronRegion 0 0.00 0.00 3.33 4.93 34.93 224.84 4.01 85.21 99.44 112.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.04 26.11 1.28 0.00 0.00 0.00 59 E13_Aa NovelBoundary 0 0.00 0.00 10.61 12.39 68.68 499.77 8.08 158.26 209.95 167.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.61 17.51 0.00 0.00 0.00 0.00 60 ER13a ExonRegion 0 1.21 0.00 18.67 45.39 134.84 1166.13 12.79 562.06 754.63 427.49 0.00 0.00 0.00 1.19 0.00 0.00 2.89 27.35 144.31 4.90 2.99 16.56 5.61 61 E13a_E14a KnownJunction 0 3.70 0.00 20.73 56.00 176.83 1235.42 11.31 732.39 930.11 587.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 47.55 226.55 5.69 3.15 27.68 7.85 62 ER14a ExonRegion 0 0.76 1.01 27.67 42.45 144.57 1099.42 10.42 630.26 882.92 508.58 0.00 3.53 0.00 0.16 1.75 0.00 1.63 28.85 100.88 5.78 0.56 11.73 7.30 63 E14a_E15a KnownJunction 0 3.48 0.00 39.29 29.20 96.94 989.54 8.08 522.05 863.33 500.33 0.00 0.00 0.00 0.00 4.45 0.00 0.00 13.72 103.44 3.26 0.00 8.57 8.37 64 E14a_E16a NovelJunction 0 0.00 0.00 0.00 1.37 33.62 61.67 0.00 20.74 9.92 5.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 65 ER15a ExonRegion 0 1.94 1.47 26.37 41.25 145.20 1241.16 17.05 619.69 885.43 477.27 0.00 0.00 0.00 0.56 0.91 0.00 0.00 29.02 138.90 4.66 0.76 20.61 9.67 66 E15_Da NovelBoundary 0 0.00 0.00 12.89 8.26 66.47 271.09 0.00 113.45 199.59 125.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.43 26.82 2.81 0.00 0.00 0.00 67 E15a_E16a KnownJunction 0 0.00 0.00 34.86 21.91 243.63 2171.93 30.52 557.37 815.56 375.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31.38 114.26 5.94 0.00 8.51 12.12 68 I15 Intron 0 0.00 0.00 4.57 4.30 17.51 95.30 1.78 42.63 87.85 55.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.54 28.20 2.05 0.00 2.00 1.13 69 I15_AR1 ActiveIntronRegion 0 0.00 0.00 4.60 4.33 17.64 96.01 1.80 42.95 88.51 56.34 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.56 28.41 2.06 0.00 2.02 1.14 70 E16_Aa NovelBoundary 0 0.00 0.00 7.69 9.89 41.17 204.65 13.29 86.87 190.39 97.27 0.00 0.00 0.00 0.00 4.45 0.00 0.00 17.53 31.06 2.43 0.00 0.00 0.00 71 ER16a ExonRegion 0 1.65 1.52 32.95 33.69 126.45 1005.54 10.08 531.04 807.47 425.10 0.00 0.00 0.00 0.00 1.59 0.00 0.00 42.70 102.27 6.17 0.86 8.68 8.25 72 E16a_E17a KnownJunction 0 0.00 0.00 32.58 37.19 140.83 907.72 16.30 605.80 872.68 432.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39.34 116.52 17.13 0.00 16.78 4.27 73 ER17a ExonRegion 0 0.69 1.59 33.95 33.03 133.03 1125.14 11.52 531.43 824.83 441.39 0.00 0.00 0.00 0.00 1.21 0.88 0.00 41.21 105.23 5.88 0.65 10.60 8.37 74 E17a_E18a KnownJunction 0 0.00 3.03 30.93 39.86 150.17 1291.13 4.15 566.37 762.32 414.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52.81 101.84 3.13 0.00 9.12 11.69 75 ER18a ExonRegion 0 2.64 0.58 37.19 37.83 95.44 883.49 8.67 484.80 701.70 415.73 0.00 0.00 0.00 0.00 0.87 0.63 0.00 27.19 107.69 7.18 0.64 13.08 9.61 76 E18a_E19a KnownJunction 0 0.00 0.00 44.56 77.18 122.67 1095.11 13.07 708.86 1094.03 564.53 0.00 0.00 0.00 0.00 0.00 0.00 0.00 27.11 92.43 12.27 3.09 19.41 16.30 77 ER19a ExonRegion 0 0.68 0.65 49.63 61.43 83.34 859.04 5.61 605.31 947.67 495.02 0.00 0.00 0.00 0.00 1.31 0.00 0.00 32.81 102.23 12.10 0.69 13.72 11.21 78 E19_Da NovelBoundary 0 0.00 0.00 21.26 42.29 43.80 361.10 11.00 243.16 346.15 251.48 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.53 34.26 3.26 0.00 11.21 0.00 79 E19a_E20a KnownJunction 0 0.00 0.00 26.91 29.23 96.52 717.88 2.16 333.23 698.98 303.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.57 34.64 6.01 2.97 10.78 7.85 80 I19 Intron 0 1.34 0.18 13.76 27.13 63.04 386.27 8.31 199.84 209.17 160.37 0.26 0.00 0.00 0.00 0.09 0.13 0.00 10.99 41.55 3.65 0.40 3.48 2.52 81 I19_SR1 SilentIntronRegion 0 2.61 0.00 17.36 23.61 32.99 304.06 4.45 166.49 213.21 156.39 0.94 0.00 0.00 0.00 0.36 0.52 0.00 10.19 45.22 4.12 0.00 3.41 3.86 82 I19_AR1 ActiveIntronRegion 0 0.00 0.00 20.13 26.16 49.49 314.00 9.60 185.34 213.63 160.49 0.25 0.00 0.00 0.00 0.00 0.00 0.00 16.39 36.61 2.60 0.00 1.97 3.68 83 I19_SR2 SilentIntronRegion 0 1.01 0.28 11.62 28.69 76.51 428.03 9.67 215.08 207.61 162.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.67 40.83 3.61 0.60 3.70 1.86 84 E20_Aa NovelBoundary 0 0.00 0.00 16.97 29.97 26.74 249.52 9.49 141.66 151.97 102.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.14 0.00 0.00 4.90 0.00 85 ER20a ExonRegion 0 1.37 0.00 19.69 32.76 79.17 513.95 4.07 324.88 510.98 244.58 0.00 0.00 0.00 0.00 0.27 0.00 0.00 14.03 66.22 3.50 1.04 7.13 5.18 86 ER20b ExonRegion 0 0.00 0.00 0.00 5.45 16.05 66.02 0.00 1.73 12.35 3.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 87 IG3 Intergenic 0 0.13 0.04 3.25 3.76 36.01 150.92 2.12 132.70 119.44 57.30 0.00 0.05 0.00 0.00 0.00 0.04 0.05 1.28 5.94 0.60 0.08 0.35 0.73 88 IG3_SR1 SilentIntergenicRegion 0 0.13 0.04 3.26 3.76 36.02 150.96 2.12 132.74 119.47 57.32 0.00 0.05 0.00 0.00 0.00 0.04 0.05 1.28 5.94 0.61 0.08 0.35 0.73