Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 MPZL1 Gene 0 117.02 211.35 136.87 107.46 121.10 133.68 96.06 130.40 100.38 127.32 197.41 92.99 97.09 108.77 107.15 105.18 88.30 149.03 97.79 194.69 133.89 303.84 194.03 2 487858 Transcript 0 1.70 0.00 0.62 0.24 1.20 0.00 0.75 0.40 0.14 0.13 5.19 0.27 3.95 1.39 2.15 0.22 0.51 0.21 0.29 0.73 0.88 0.82 1.18 3 464954 Transcript 0 2.12 3.53 2.08 4.95 4.64 1.91 4.70 9.30 6.81 7.62 5.19 2.92 5.65 2.76 12.06 15.73 13.09 7.28 9.92 14.36 2.50 3.61 12.93 4 359523 Transcript 0 4.69 11.47 5.75 5.40 5.53 4.75 5.68 8.82 7.78 5.35 3.16 4.44 5.83 2.69 4.27 6.83 2.19 4.46 3.65 11.29 4.60 4.13 7.18 5 448405 Transcript 0 0.00 2.76 0.00 0.00 0.00 0.00 0.00 2.38 1.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 0.00 0.00 0.00 6 392121 Transcript 0 0.00 15.79 3.49 11.09 0.00 7.21 3.93 4.64 6.51 4.49 59.17 7.65 20.13 19.37 39.56 7.18 13.37 23.38 13.46 13.23 13.90 20.15 12.98 7 465787 Transcript 0 35.83 14.89 16.56 14.26 20.14 7.29 27.08 18.35 8.78 13.21 69.00 40.19 73.50 43.42 28.31 47.83 30.16 14.90 12.06 24.56 9.41 10.48 16.54 8 474859 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 474729 Transcript 0 0.84 1.68 2.42 1.91 1.86 0.92 3.78 4.57 1.62 3.04 0.81 2.91 3.78 0.53 2.98 3.55 2.03 1.19 0.00 4.86 0.44 0.79 2.78 10 367853 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 403379 Transcript 0 10.88 2.31 4.82 6.27 10.61 11.30 21.79 7.20 4.02 7.41 79.11 24.06 36.93 51.29 50.28 41.86 39.15 11.55 4.17 17.36 8.65 6.55 8.98 12 498279 Transcript 0 4.07 4.95 3.10 2.08 4.80 5.64 9.84 3.06 1.18 3.28 8.84 7.70 11.97 5.23 7.68 5.69 4.64 4.01 2.02 4.35 3.39 6.66 3.01 13 IG16_AR1 ActiveIntergenicRegion 0 80.95 2.00 12.05 7.31 87.04 10.69 16.97 13.14 11.83 5.64 48.63 66.12 105.43 74.45 46.25 42.16 141.11 0.00 0.00 0.00 0.00 0.80 0.00 14 ER1a ExonRegion 0 5.53 0.00 1.99 0.00 1.95 0.00 2.96 0.00 0.69 0.64 12.02 1.33 2.26 3.09 4.09 1.11 0.00 0.00 0.00 1.58 1.03 0.78 1.09 15 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.21 0.00 6.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.72 0.00 0.00 16 ER2a ExonRegion 0 2.44 0.00 0.11 0.00 1.07 0.00 0.00 1.99 0.00 0.00 8.43 0.00 8.42 3.84 3.56 0.00 2.55 1.06 0.00 0.82 0.63 1.61 3.40 17 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18 ER3a ExonRegion 0 0.51 0.00 0.99 1.19 2.95 0.00 0.78 0.00 0.00 0.00 3.27 0.00 2.26 0.00 3.10 0.00 0.00 0.00 1.43 1.25 0.00 1.72 1.42 19 E3_Ab KnownBoundary 0 3.70 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.64 7.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.14 0.00 0.00 3.12 3.50 20 ER3b ExonRegion 0 5.42 3.47 0.00 0.56 2.83 5.99 4.24 0.00 0.00 2.53 14.50 0.00 0.00 2.05 5.21 5.51 2.43 3.21 2.44 3.88 4.80 5.15 3.80 21 E3_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 8.32 0.00 0.00 2.38 0.00 3.25 2.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 E3_Ad KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 23 E3_Ae KnownBoundary 0 3.78 6.25 0.00 1.76 0.00 8.23 8.66 0.00 0.00 6.37 7.90 0.00 0.00 0.00 8.90 8.72 4.30 38.80 9.51 12.91 0.00 9.25 0.00 24 E3_Da KnownBoundary 1 29.34 37.36 14.67 14.22 11.21 55.93 31.89 10.64 4.40 22.38 75.12 6.15 0.00 18.36 36.47 46.48 28.14 56.87 13.08 64.17 76.11 30.19 52.41 25 ER3c ExonRegion 1 8.47 12.20 0.00 1.36 5.35 18.70 14.56 0.00 0.00 4.36 32.86 0.00 3.75 6.50 22.05 12.48 6.60 7.39 3.19 10.64 18.51 8.33 8.81 26 ER3d ExonRegion 1 12.70 12.20 1.23 3.75 5.35 23.84 16.88 0.00 1.24 4.59 42.04 0.00 4.69 12.18 31.91 17.83 6.60 7.39 3.19 12.23 26.44 8.33 11.75 27 ER3e ExonRegion 1 12.60 16.66 4.08 5.19 4.46 30.65 20.17 3.21 1.76 8.68 48.14 0.00 6.25 23.12 39.51 18.54 9.27 7.04 4.10 35.36 32.53 10.42 15.66 28 ER3f ExonRegion 1 6.50 9.39 9.01 4.92 3.72 16.84 4.16 8.82 8.13 12.06 45.40 3.73 6.70 17.81 17.91 20.96 22.68 10.58 7.62 29.32 46.60 10.36 21.28 29 E3_Af KnownBoundary 1 7.41 17.83 4.79 0.00 3.99 0.00 2.25 7.31 7.12 21.70 96.76 6.30 19.48 18.25 26.70 7.26 88.45 11.57 25.69 29.34 136.16 27.13 12.04 30 ER3g ExonRegion 1 3.39 11.16 19.59 11.74 3.72 3.89 3.12 23.76 30.99 29.50 111.06 1.01 13.24 97.05 78.50 76.25 47.79 119.24 48.98 119.50 96.74 94.87 119.52 31 E3b_E4c KnownJunction 1 3.26 29.86 56.62 45.15 11.38 13.34 14.31 66.09 57.32 67.93 118.08 0.00 53.41 114.13 112.12 309.66 60.78 438.04 116.80 166.57 77.65 205.13 516.02 32 I3_AR1 ActiveIntronRegion 0 12.82 6.96 1.88 5.84 3.72 1.92 6.35 6.13 2.49 2.16 1.92 6.27 20.99 0.92 1.34 4.82 4.12 1.95 1.14 7.41 1.57 0.93 4.75 33 ER4a ExonRegion 0 0.84 1.68 2.42 1.91 1.86 0.92 3.78 4.57 1.62 3.04 0.81 2.91 3.78 0.53 2.98 3.55 2.03 1.19 0.00 4.86 0.44 0.79 2.78 34 E4_Ab KnownBoundary 0 0.00 0.00 0.00 3.50 0.00 0.00 2.25 7.06 3.10 1.67 5.37 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 2.51 4.35 35 E4_Ac KnownBoundary 0 0.00 9.14 5.32 0.00 0.00 0.00 4.42 0.00 0.00 1.67 0.00 0.00 5.68 0.00 0.00 0.00 8.79 0.00 0.00 0.00 0.00 0.00 0.00 36 ER4b ExonRegion 0 0.49 7.82 8.01 4.82 0.82 1.55 5.30 9.71 7.32 6.26 13.53 0.33 3.25 9.49 9.82 20.35 12.44 24.16 8.33 13.09 7.97 16.67 35.01 37 ER4c ExonRegion 1 26.86 139.45 57.68 48.35 48.31 113.94 65.13 79.50 96.96 101.76 281.56 36.88 71.71 184.29 139.30 165.76 129.03 237.56 104.85 231.62 236.91 275.98 237.04 38 E4_Da KnownBoundary 0 0.00 2.89 6.39 2.66 0.00 0.00 4.06 16.06 9.32 1.13 7.32 6.15 0.00 0.00 4.45 3.42 34.13 0.00 0.00 14.13 2.41 0.00 4.01 39 E4a_E5a KnownJunction 1 46.08 305.54 99.82 64.19 42.78 82.91 37.27 120.84 121.24 148.82 334.93 25.06 107.46 146.80 110.39 107.41 176.16 207.56 68.33 325.53 238.95 370.65 237.91 40 E4a_E6a KnownJunction 0 0.00 2.76 0.00 0.00 0.00 0.00 0.00 2.38 1.71 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.68 0.00 0.00 0.00 41 E4a_E10a KnownJunction 0 0.00 15.79 3.49 11.09 0.00 7.21 3.93 4.64 6.51 4.49 59.17 7.65 20.13 19.37 39.56 7.18 13.37 23.38 13.46 13.23 13.90 20.15 12.98 42 ER4d ExonRegion 0 2.12 3.53 2.08 4.95 4.64 1.91 4.70 9.30 6.81 7.62 5.19 2.92 5.65 2.76 12.06 15.73 13.09 7.28 9.92 14.36 2.50 3.61 12.93 43 I4_SR1 SilentIntronRegion 0 6.99 6.67 3.58 4.46 6.35 2.60 7.42 12.56 6.13 6.53 5.09 9.31 20.68 4.14 7.24 10.51 7.41 4.35 4.60 16.09 2.62 3.17 10.31 44 ER5a ExonRegion 0 72.69 231.52 143.86 129.57 128.26 161.69 134.91 155.94 163.10 194.12 470.07 133.04 186.99 292.49 192.08 236.76 209.55 286.00 147.81 486.22 312.60 594.39 396.12 45 E5a_E6a KnownJunction 0 64.75 228.51 144.70 126.12 140.15 201.59 134.21 196.62 182.61 218.01 499.13 207.82 361.18 306.96 202.36 244.81 214.96 267.46 152.76 434.57 417.99 582.76 435.01 46 ER6a ExonRegion 0 60.47 303.28 148.88 141.71 143.50 167.87 143.03 165.40 183.96 216.87 438.19 195.87 284.29 293.16 206.69 245.17 231.63 273.51 183.12 447.16 401.56 587.72 434.31 47 E6_Da KnownBoundary 1 34.75 11.84 12.98 4.96 0.00 5.39 16.78 12.65 4.63 9.13 25.16 50.42 126.13 55.80 25.59 25.38 8.88 15.55 12.71 26.85 8.83 5.57 8.54 48 E6a_E8a KnownJunction 0 51.49 9.41 15.14 23.57 57.56 7.33 22.74 28.38 18.61 25.68 60.17 36.76 60.06 42.03 89.75 30.59 81.53 53.35 111.25 12.02 390.93 477.56 400.95 49 E6a_E10a KnownJunction 0 21.56 374.01 111.00 113.74 114.60 228.16 112.08 150.29 171.41 194.29 306.66 116.89 197.06 153.87 106.93 219.09 155.77 223.43 87.91 488.14 28.05 43.35 19.89 50 ER6b ExonRegion 0 35.83 14.89 16.56 14.26 20.14 7.29 27.08 18.35 8.78 13.21 69.00 40.19 73.50 43.42 28.31 47.83 30.16 14.90 12.06 24.56 9.41 10.48 16.54 51 I6 Intron 0 32.05 18.98 14.95 13.47 20.37 13.96 29.81 16.45 12.81 18.33 86.39 55.12 101.11 58.01 27.72 64.00 51.34 25.94 12.26 23.17 14.43 17.74 22.36 52 I6_SR1 SilentIntronRegion 0 32.10 19.01 14.97 13.49 20.40 13.98 29.85 16.47 12.83 18.36 86.53 55.20 101.27 58.10 27.76 64.10 51.42 25.98 12.28 23.21 14.46 17.77 22.39 53 E7_Aa NovelBoundary 1 13.56 26.05 18.80 19.51 41.60 23.62 36.43 20.58 11.86 11.17 124.98 11.70 87.98 74.05 33.01 48.71 40.77 19.57 9.51 18.34 15.44 14.76 14.85 54 ER7a ExonRegion 0 14.71 4.62 7.81 10.47 17.66 8.92 25.25 10.54 6.25 10.64 79.20 36.27 54.55 63.37 41.22 53.99 53.14 21.43 8.35 25.76 17.30 13.11 17.95 55 E7_Da NovelBoundary 0 6.30 11.51 22.15 13.85 3.90 2.90 30.30 17.13 6.54 7.71 23.16 12.30 32.14 13.01 0.00 36.06 34.97 20.89 4.33 20.20 8.40 6.06 19.04 56 E7a_E8a KnownJunction 0 7.04 0.00 1.83 2.06 3.57 13.69 18.33 3.86 1.79 4.19 79.02 11.85 19.32 39.20 59.34 29.74 25.15 1.66 0.00 8.95 0.00 0.00 0.00 57 I7 Intron 0 7.30 7.83 5.41 11.50 10.77 7.95 21.61 9.00 7.33 6.50 22.66 16.90 33.20 11.59 6.51 16.04 19.86 5.95 4.51 17.88 6.24 9.58 13.64 58 I7_SR1 SilentIntronRegion 0 15.01 15.12 4.02 7.01 10.55 13.44 16.24 12.53 6.81 7.01 22.37 16.48 27.35 15.01 6.14 15.14 15.28 6.94 9.56 17.88 9.43 9.47 15.30 59 I7_AR1 ActiveIntronRegion 0 3.94 3.08 10.59 10.18 8.73 5.34 18.47 9.31 8.75 7.45 14.53 12.99 31.83 8.60 5.56 10.09 11.28 3.62 1.38 13.73 4.61 9.91 7.17 60 I7_AR2 ActiveIntronRegion 0 7.95 6.02 4.72 13.41 12.16 7.95 24.48 11.13 8.19 6.65 28.16 18.17 48.62 13.33 7.60 20.79 21.24 7.86 5.45 19.72 8.34 11.44 12.79 61 I7_AR3 ActiveIntronRegion 0 9.60 11.51 2.78 15.36 6.92 1.97 28.06 5.19 6.42 3.55 20.13 24.82 27.57 12.28 6.79 22.62 4.03 3.70 2.95 17.90 9.73 4.88 12.82 62 I7_SR2 SilentIntronRegion 0 5.02 8.94 5.38 10.61 10.29 7.78 20.23 5.73 6.15 6.23 19.01 15.95 17.58 9.38 5.62 11.83 24.08 4.34 3.01 17.05 2.89 7.82 16.37 63 E8_Aa NovelBoundary 1 14.89 18.88 12.15 7.39 0.00 11.98 47.12 3.24 8.45 13.24 17.90 11.70 91.07 19.48 4.33 0.00 28.61 16.83 3.58 26.27 23.97 10.78 32.10 64 ER8a ExonRegion 0 62.55 7.05 30.46 20.15 47.25 20.72 48.32 48.08 36.13 35.88 189.35 60.44 104.00 114.43 119.77 97.39 116.43 144.05 110.65 31.83 384.79 529.40 484.69 65 E8a_E10a KnownJunction 0 47.93 6.58 22.74 16.45 41.00 16.81 63.42 31.71 32.15 30.41 172.99 37.36 60.87 78.87 89.62 95.36 151.57 99.57 109.46 22.88 332.61 465.44 458.83 66 I8 Intron 0 7.35 12.71 5.13 11.06 8.99 7.30 16.15 7.77 6.08 5.89 17.56 12.29 21.06 10.21 8.49 16.77 12.83 9.74 5.95 19.74 8.74 15.56 10.92 67 I8_AR1 ActiveIntronRegion 0 4.80 17.43 6.00 14.00 8.49 8.51 13.32 8.16 8.60 6.94 21.77 13.10 20.31 14.88 10.51 22.35 18.30 14.84 6.04 27.01 16.82 24.21 14.11 68 I8_AR2 ActiveIntronRegion 0 15.34 14.92 8.27 14.35 14.30 18.11 26.03 15.87 9.67 7.12 34.15 18.43 37.09 18.28 16.16 32.84 21.53 18.82 14.43 22.94 18.17 24.54 21.02 69 ER9a ExonRegion 0 8.14 9.89 4.52 4.16 9.60 11.28 19.68 3.67 2.36 6.55 15.05 15.40 23.95 10.45 10.18 11.38 9.29 8.01 4.05 8.70 6.78 13.32 6.02 70 E9_Da NovelBoundary 1 7.41 15.66 5.47 13.25 43.63 16.69 39.30 13.76 9.29 17.92 20.43 13.35 46.75 13.30 10.38 0.00 8.79 3.32 4.05 11.70 3.15 18.92 11.69 71 E9a_E10a KnownJunction 0 0.00 0.00 1.69 0.00 0.00 0.00 0.00 2.46 0.00 0.00 2.63 0.00 0.00 0.00 5.19 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 72 I9 Intron 0 8.60 8.26 7.62 11.92 17.81 16.97 23.45 11.62 6.23 5.59 27.26 17.64 39.28 12.64 10.48 15.43 11.92 7.16 3.59 12.01 11.17 18.10 9.94 73 I9_SR1 SilentIntronRegion 0 5.91 11.21 10.79 10.25 29.52 12.09 24.91 9.81 5.31 4.83 25.59 19.44 29.85 11.47 9.34 13.75 10.14 1.50 0.83 6.41 7.58 18.90 2.48 74 I9_AR1 ActiveIntronRegion 0 9.37 7.51 6.81 12.44 14.73 18.39 23.18 12.18 6.51 5.83 27.87 17.26 42.06 13.03 10.84 15.97 12.47 8.74 4.36 13.60 12.21 17.99 12.02 75 E10_Aa NovelBoundary 0 21.41 15.46 8.40 19.81 30.65 12.61 26.94 17.99 13.34 16.52 34.75 12.15 43.67 19.25 4.45 18.80 23.00 19.44 18.54 35.73 25.21 19.90 15.37 76 ER10a ExonRegion 0 57.32 304.87 126.02 130.13 137.21 216.90 142.51 182.52 199.94 205.75 570.05 145.82 292.85 255.44 228.85 281.64 299.06 350.11 210.62 435.40 358.76 435.37 433.68 77 ER10b ExonRegion 0 116.02 230.16 129.42 149.00 184.56 262.94 202.30 194.64 205.27 223.15 582.31 215.73 303.71 324.50 265.59 279.33 294.19 337.89 223.15 440.80 325.24 584.23 450.25 78 E10_Db KnownBoundary 0 133.65 177.73 128.35 183.46 147.62 298.12 169.81 178.63 180.55 217.88 438.48 272.79 293.16 265.41 213.49 258.14 273.40 309.66 191.44 356.08 219.99 411.49 282.64 79 ER10c ExonRegion 0 88.01 191.33 124.19 176.52 207.94 251.09 203.52 218.52 208.10 226.26 449.36 273.88 310.57 243.14 184.31 211.38 208.98 200.77 171.20 448.41 169.83 667.17 307.77 80 E10_Dc KnownBoundary 0 93.28 182.73 90.59 144.84 202.29 212.66 220.24 141.50 146.93 207.86 299.92 311.35 288.29 196.13 145.62 155.77 144.55 105.37 172.80 385.42 83.34 669.16 228.00 81 E10_Dd KnownBoundary 1 48.60 174.11 85.86 150.83 181.24 203.12 164.37 148.85 142.39 160.23 199.79 375.57 298.68 187.24 90.12 106.90 56.38 137.09 57.04 307.06 47.14 352.22 193.43 82 ER10d ExonRegion 0 73.52 202.72 118.80 202.64 226.45 236.66 212.81 204.41 208.34 254.01 320.86 424.52 357.68 236.27 144.30 169.25 136.03 186.53 140.66 425.42 87.57 663.66 284.08 83 ER10e ExonRegion 0 117.91 373.87 140.58 191.41 206.23 249.31 196.00 213.17 211.97 245.24 380.41 346.68 247.86 180.04 132.60 154.38 144.96 128.18 124.08 391.74 128.00 673.39 260.72 84 E10_De KnownBoundary 0 239.01 505.44 216.67 244.02 347.62 358.20 262.41 244.51 260.21 288.85 366.83 274.44 157.78 177.47 116.69 158.93 121.65 156.15 112.94 392.20 187.68 680.49 337.27 85 ER10f ExonRegion 0 178.92 543.14 175.97 182.27 250.73 246.57 201.39 254.83 213.87 251.37 357.49 247.19 198.84 155.12 130.20 134.35 121.30 116.16 137.55 418.98 112.50 681.21 276.12 86 E10_Df KnownBoundary 0 322.80 496.82 241.27 268.96 240.41 263.09 251.06 309.04 247.28 291.24 380.73 363.57 370.27 188.59 166.14 153.72 170.55 155.62 211.30 595.13 163.03 681.84 461.99 87 ER10g ExonRegion 0 306.37 481.83 358.80 250.15 273.45 297.75 189.87 293.42 199.52 271.07 332.43 143.35 134.25 178.68 217.10 187.27 146.81 338.19 212.34 349.03 268.92 582.54 389.80 88 E10_Dg KnownBoundary 0 3.41 52.95 8.10 4.10 22.75 15.79 15.24 14.17 14.09 6.58 0.00 0.00 20.45 2.47 9.39 7.86 4.39 4.81 13.84 11.70 0.00 12.12 11.01 89 ER10h ExonRegion 0 4.69 11.47 5.75 5.40 5.53 4.75 5.68 8.82 7.78 5.35 3.16 4.44 5.83 2.69 4.27 6.83 2.19 4.46 3.65 11.29 4.60 4.13 7.18