Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 IFI16 Gene 0 401.32 83.90 68.06 56.37 229.11 44.15 55.04 118.77 70.42 32.29 918.19 944.67 1016.99 931.99 671.23 796.45 788.03 2.52 0.06 35.62 358.23 777.93 340.44 2 359709 Transcript 0 45.46 22.42 17.03 14.36 23.86 9.19 7.67 32.76 26.16 6.81 110.24 62.82 85.11 77.27 30.25 80.21 99.12 0.00 0.00 6.75 32.88 175.04 48.54 3 426592 Transcript 0 1.54 7.74 0.00 0.00 0.00 1.76 0.00 0.00 0.00 0.00 0.03 0.00 0.07 0.00 0.00 2.67 0.00 0.00 0.00 4.33 2.41 1.83 2.14 4 447473 Transcript 1 7.81 0.90 3.22 0.45 2.44 4.92 0.54 0.57 2.49 0.80 262.10 30.69 50.23 65.97 22.95 100.11 60.15 0.00 0.00 0.90 1.47 17.80 9.77 5 368131 Transcript 0 21.83 7.58 0.15 0.17 8.86 0.34 2.76 1.26 0.36 0.98 13.77 19.12 30.68 22.13 15.72 14.67 16.44 0.00 0.00 1.95 5.78 1.39 4.34 6 483916 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 493884 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 368132 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 392247 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 430894 Transcript 0 0.00 3.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.69 0.00 0.00 2.47 0.00 0.00 4.11 0.00 0.00 0.00 0.00 0.00 0.00 11 295809 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 340979 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 13 474473 Transcript 0 9.65 2.46 1.56 1.40 6.60 0.86 4.40 4.32 4.21 2.05 26.53 28.68 23.50 17.46 7.30 21.44 18.47 0.06 0.00 0.72 11.10 20.34 22.79 14 448393 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15 ER1a ExonRegion 0 4.94 24.91 3.79 1.75 6.12 0.90 3.28 2.95 6.36 0.61 2.54 1.36 0.00 0.32 0.00 0.00 0.39 0.00 0.00 4.59 27.05 109.11 29.94 16 E1a_E4d KnownJunction 0 10.30 20.79 3.67 1.73 3.48 5.74 0.00 4.39 6.86 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.65 114.08 7.68 17 ER2a ExonRegion 0 3.08 9.56 0.00 0.00 0.00 0.97 0.00 0.00 0.00 0.00 0.06 0.00 0.13 0.00 0.00 1.66 0.00 0.00 0.00 5.78 4.82 1.28 4.28 18 E2a_E4d KnownJunction 0 0.00 5.92 0.00 0.00 0.00 2.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.67 0.00 0.00 0.00 2.88 0.00 2.39 0.00 19 I2_AR1 ActiveIntronRegion 1 10.32 0.85 1.62 0.00 6.63 1.63 0.00 0.00 3.16 0.00 223.58 9.49 12.64 56.21 17.41 66.14 57.21 0.00 0.00 0.00 0.98 4.89 2.60 20 ER3a ExonRegion 1 3.09 1.80 1.65 0.90 0.56 1.44 1.08 1.14 2.30 0.21 305.41 23.27 27.24 81.26 17.84 66.06 77.76 0.00 0.00 1.79 2.93 13.44 7.00 21 E3a_E4d KnownJunction 1 12.52 0.00 4.79 0.00 4.33 8.40 0.00 0.00 2.69 1.40 218.79 38.11 73.21 50.68 28.06 134.15 42.54 0.00 0.00 0.00 0.00 22.17 12.55 22 ER4a ExonRegion 0 26.19 2.46 0.00 0.34 7.69 0.69 4.19 0.79 0.10 0.81 27.06 2.53 22.67 41.01 17.65 26.38 32.87 0.00 0.00 3.90 11.57 1.74 3.55 23 ER4b ExonRegion 1 127.52 33.55 0.61 3.41 43.48 9.63 14.23 7.78 8.03 3.44 284.62 9.74 128.98 254.99 124.03 274.18 385.38 0.00 0.00 10.11 71.62 25.52 28.63 24 ER4c ExonRegion 1 663.88 206.09 14.95 29.98 190.01 38.37 59.09 69.99 67.57 17.29 1523.46 157.68 317.94 975.41 485.87 1600.95 1459.32 1.76 0.00 46.20 354.47 330.66 247.80 25 E4_Ad KnownBoundary 1 230.19 32.49 20.05 24.91 99.66 16.81 38.24 72.62 46.82 23.07 243.27 639.66 1034.35 315.56 97.78 177.30 306.78 0.00 0.00 5.69 97.55 157.86 108.41 26 ER4d ExonRegion 0 147.65 59.33 31.35 51.78 131.55 37.87 36.25 99.75 85.99 25.33 1399.04 531.10 644.91 884.43 441.36 1081.68 1160.62 1.49 0.00 59.05 346.57 970.75 368.51 27 E4a_E5a KnownJunction 0 140.02 64.40 41.42 45.52 296.94 47.13 68.19 102.32 52.49 32.23 678.01 1227.25 870.07 616.40 253.42 840.12 486.02 0.00 0.00 48.07 331.56 997.86 389.43 28 ER5a ExonRegion 0 460.25 129.85 68.50 60.43 235.41 67.30 66.08 155.95 97.79 45.53 1500.12 1571.05 1299.17 1348.10 583.87 876.38 1081.65 2.33 0.00 60.84 389.80 1220.83 429.12 29 E5a_E6b KnownJunction 1 394.51 73.74 68.83 73.38 363.24 83.30 78.92 167.21 100.06 54.56 1434.36 2289.90 1623.27 1838.90 592.25 1389.89 1435.90 10.45 0.00 62.51 732.43 1103.49 615.72 30 ER6a ExonRegion 0 9.65 2.46 1.56 1.40 6.60 0.86 4.40 4.32 4.21 2.05 26.53 28.68 23.50 17.46 7.30 21.44 18.47 0.06 0.00 0.72 11.10 20.34 22.79 31 E6_Ab KnownBoundary 0 29.93 0.00 5.09 1.27 12.99 0.00 15.24 7.48 2.75 0.00 15.90 0.00 14.12 4.83 0.00 15.89 13.28 0.00 0.00 2.68 7.97 16.84 12.29 32 ER6b ExonRegion 0 240.27 72.25 97.71 66.22 229.74 66.97 63.92 171.51 111.71 58.25 1804.89 1779.52 1733.60 2004.87 851.71 2010.66 1664.83 8.80 0.00 61.59 989.96 1371.21 782.63 33 E6a_E7a KnownJunction 0 280.72 74.66 124.89 80.44 294.40 45.71 65.54 205.16 112.90 82.09 2245.31 1730.36 1178.98 2438.83 935.04 2254.62 2143.71 4.60 0.00 39.82 1334.89 1277.09 858.50 34 E6a_E8a KnownJunction 0 0.00 3.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.69 0.00 0.00 2.47 0.00 0.00 4.11 0.00 0.00 0.00 0.00 0.00 0.00 35 ER7a ExonRegion 0 313.63 92.51 98.36 66.33 213.99 53.45 59.00 169.01 104.23 53.73 1911.44 1415.82 1204.03 2066.14 863.42 1713.71 1891.16 9.47 0.00 50.34 1401.77 1282.00 761.22 36 E7_Da NovelBoundary 0 96.61 29.01 0.00 0.00 57.47 13.29 21.20 40.17 45.89 13.59 531.82 270.84 274.33 371.83 103.47 312.91 441.79 3.23 0.00 18.15 336.69 251.55 239.36 37 E7b_E8a KnownJunction 0 789.84 102.02 146.80 96.36 586.16 86.94 127.76 199.09 127.05 70.86 2359.86 1376.85 1657.68 1898.30 742.82 1796.79 2299.67 4.06 0.00 53.95 1545.11 1239.98 836.81 38 ER7b ExonRegion 0 530.19 109.81 123.76 79.05 413.40 71.52 90.69 178.03 113.01 63.08 2191.91 1268.53 1493.78 1887.23 768.83 1552.94 2056.46 5.54 0.00 48.94 1531.58 1135.52 773.81 39 ER7c ExonRegion 0 536.54 103.97 127.74 87.40 448.86 79.31 99.30 181.06 112.70 65.23 2266.57 1292.35 1503.16 1922.96 808.36 1637.27 2148.47 5.54 0.00 53.19 1542.05 1202.19 800.97 40 ER8a ExonRegion 0 410.37 101.57 107.82 97.97 325.92 75.22 99.66 184.27 125.16 61.05 1751.35 1647.63 2054.54 1975.07 1013.49 1475.14 1699.16 3.22 0.00 62.18 750.00 1563.81 671.53 41 E8_Da KnownBoundary 0 546.39 153.00 112.95 101.42 309.68 59.45 67.39 235.35 157.17 69.81 1768.45 1753.02 2138.50 1601.87 984.49 1068.95 1398.32 0.00 0.00 65.39 313.83 1844.54 507.65 42 E8a_E13b KnownJunction 0 121.13 21.58 43.64 39.59 61.97 20.95 19.74 90.94 65.25 19.82 328.19 187.11 255.34 231.50 90.74 240.62 296.96 0.00 0.00 15.66 62.95 301.94 107.98 43 ER8b ExonRegion 0 541.77 232.30 107.12 95.99 422.04 78.61 111.99 240.82 150.45 61.97 1870.38 2767.25 3318.35 1574.23 1062.41 957.01 1378.44 0.42 0.00 68.51 277.65 1847.42 428.35 44 E8b_E9a KnownJunction 1 862.52 311.13 171.16 126.36 646.35 130.89 130.46 305.59 175.26 67.13 2040.46 3898.42 4218.55 1911.60 1447.56 1008.54 1601.03 0.00 0.00 101.12 364.61 2253.45 491.01 45 ER9a ExonRegion 0 793.19 247.12 207.43 170.95 573.69 101.70 139.05 296.81 192.94 86.25 2330.65 3638.65 3703.31 2102.35 1432.67 1743.35 1887.89 6.01 0.00 91.15 534.57 2400.69 762.02 46 E9a_E10a KnownJunction 0 1425.73 396.05 263.33 201.14 1091.68 213.23 283.35 346.38 150.66 94.47 2447.99 3786.78 4264.17 2779.52 1730.52 2077.49 2649.18 11.81 0.00 99.77 962.86 2716.93 873.61 47 ER10a ExonRegion 0 775.00 262.96 183.92 136.16 405.79 90.74 116.71 275.43 166.13 73.87 2172.50 2563.38 2983.73 2373.58 1404.81 2324.50 2048.19 10.28 0.00 83.52 1237.65 1871.20 997.13 48 E10a_E11a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 49 E10a_E12a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50 E10a_E13a KnownJunction 0 145.06 14.87 45.06 21.78 65.03 2.78 16.08 46.04 14.32 10.29 255.17 162.20 155.83 341.93 240.56 262.84 214.96 0.00 0.00 11.57 262.24 202.19 153.06 51 ER11a ExonRegion 0 554.84 96.97 117.82 73.03 283.96 66.87 75.82 188.21 100.75 41.10 1580.32 1415.04 1840.03 1794.81 1220.60 1852.48 1457.19 8.36 0.00 68.00 859.04 1045.46 676.81 52 E11a_E12a KnownJunction 0 163.14 18.62 39.68 16.58 164.69 22.60 42.62 75.70 14.90 14.08 744.61 560.73 704.66 721.41 542.31 508.76 687.80 0.00 0.00 29.53 336.19 246.28 186.77 53 E11a_E13a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54 ER12a ExonRegion 0 454.77 84.73 89.68 56.95 249.00 58.92 49.81 136.95 72.48 36.29 1235.90 1097.96 1452.77 1453.69 1020.05 1588.80 1112.95 6.72 0.00 47.33 606.20 777.44 575.37 55 E12a_E13a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 56 I12_SR1 SilentIntronRegion 0 89.13 3.36 2.90 9.77 80.14 18.97 14.13 12.92 13.04 5.56 35.51 55.55 99.48 56.72 26.92 52.63 51.18 0.37 0.00 5.58 15.04 75.42 33.98 57 I12_AR2 ActiveIntronRegion 0 152.43 4.29 10.41 11.54 49.53 19.26 12.91 20.44 16.09 2.79 39.91 41.57 90.29 59.27 42.77 56.09 63.37 0.00 0.00 4.46 20.78 55.09 30.29 58 E13_Aa NovelBoundary 0 985.36 9.54 10.61 16.65 172.75 48.27 39.75 24.73 26.01 4.06 103.18 63.02 107.79 191.89 175.66 192.94 100.79 0.00 0.00 10.99 82.29 77.64 91.25 59 ER13a ExonRegion 0 1291.70 116.42 152.36 89.88 606.14 119.65 130.99 235.73 122.46 57.66 1785.69 1435.03 1618.41 2134.34 1697.26 1802.65 1573.03 5.11 0.00 58.90 974.07 1205.25 824.81 60 E13_Ab KnownBoundary 0 1248.22 175.10 129.09 120.53 667.49 120.33 189.55 265.05 143.52 64.84 1713.70 1500.64 1531.07 2146.99 1913.47 1831.57 1410.75 0.00 0.00 59.63 687.27 1382.96 861.48 61 ER13b ExonRegion 0 1095.73 113.75 172.11 146.41 669.47 118.01 141.86 267.80 155.08 64.72 1819.57 1666.37 1599.19 2146.87 1829.90 1721.40 1546.75 3.34 0.00 63.97 714.27 1320.47 759.06 62 E13_Da KnownBoundary 0 121.35 16.77 1.39 7.23 18.85 5.62 24.82 5.87 21.24 4.57 67.54 24.01 92.85 29.14 9.52 44.95 79.94 2.57 0.00 5.43 27.74 81.13 56.60 63 E13a_E13c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 64 E13a_E13d KnownJunction 0 1345.79 153.33 207.53 126.56 736.93 138.39 143.35 266.20 142.07 68.58 1846.10 1236.85 1118.11 2035.92 1735.71 1230.96 1710.05 0.00 0.00 51.01 614.56 1090.14 620.33 65 ER13c ExonRegion 0 55.34 4.61 0.75 7.60 30.92 3.92 10.56 14.44 9.49 4.37 52.01 30.23 38.75 38.79 17.29 53.82 45.93 0.28 1.15 6.13 15.10 61.83 34.96 66 E13_Ac KnownBoundary 0 66.97 0.00 0.00 4.13 12.99 0.00 4.11 13.06 9.40 1.64 36.96 39.01 25.65 24.43 28.56 36.32 38.24 0.00 4.80 5.50 11.37 37.29 24.93 67 E13_Db KnownBoundary 0 96.91 6.51 0.00 5.53 78.61 2.44 20.14 17.09 9.78 6.29 65.70 24.61 81.49 33.14 18.54 32.38 53.67 0.00 0.00 0.00 32.06 52.11 32.69 68 E13b_E13e KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 69 ER13d ExonRegion 0 63.21 3.32 0.29 6.54 49.23 1.83 12.49 19.99 11.12 5.51 57.28 31.03 53.31 29.34 17.12 38.74 52.81 0.00 2.34 1.56 21.38 53.69 36.32 70 ER13e ExonRegion 0 83.81 9.58 3.46 7.38 44.92 5.74 9.79 16.17 12.00 3.68 48.28 60.55 63.91 29.25 26.32 26.12 42.77 0.24 0.00 3.88 12.99 57.23 19.65 71 E13_Ad KnownBoundary 0 157.36 6.58 1.33 6.66 60.53 2.16 20.76 10.56 2.84 0.00 41.22 103.98 74.51 29.20 29.30 12.13 65.73 0.00 0.00 2.75 24.34 56.03 15.79 72 E13_Ae KnownBoundary 0 1286.60 133.27 158.30 172.51 1120.12 148.38 212.20 262.26 135.82 65.87 1464.05 1540.85 1886.89 2078.41 2319.43 1311.79 1192.24 0.00 0.00 45.00 553.59 1166.38 627.67 73 ER13f ExonRegion 0 1165.04 130.61 179.34 145.65 908.89 137.53 163.02 263.39 142.32 66.96 1727.76 1416.71 1710.20 2061.79 1900.60 1250.98 1474.54 0.00 0.00 46.26 636.66 1138.74 599.17 74 ER13g ExonRegion 0 1360.79 141.54 196.44 158.82 756.94 116.09 162.74 280.79 145.20 79.17 1527.49 1531.12 1510.95 1689.34 2016.86 1392.31 1286.75 4.69 0.00 69.43 537.53 1481.58 602.80 75 E13_Dc NovelBoundary 0 135.36 11.91 1.12 18.58 47.28 5.11 21.24 28.63 22.31 2.44 70.70 95.43 72.88 72.69 132.89 65.79 47.50 1.62 0.00 2.68 17.11 48.31 32.44 76 E13c_E14a KnownJunction 0 833.11 114.39 211.38 173.60 332.17 68.37 66.02 293.68 155.41 90.20 1464.21 1162.73 1322.97 1802.47 2601.65 1089.97 982.98 0.00 0.00 57.97 424.41 2301.03 559.73 77 I13 Intron 0 158.97 10.35 4.79 6.42 46.16 5.70 11.92 22.91 9.66 2.75 56.85 49.48 56.79 48.99 61.09 49.68 51.10 0.54 0.00 5.93 14.51 58.71 24.23 78 I13_AR1 ActiveIntronRegion 0 136.85 15.65 3.48 2.39 31.10 7.75 13.81 13.46 7.34 1.75 37.98 49.48 37.58 42.72 52.94 42.17 35.69 0.00 0.00 3.01 4.47 50.75 19.14 79 I13_SR1 SilentIntronRegion 0 117.45 9.92 3.59 5.93 32.19 2.93 9.97 18.68 6.69 0.99 42.86 60.63 43.21 38.44 49.56 31.79 41.78 0.64 0.00 4.65 9.35 37.68 21.63 80 I13_AR2 ActiveIntronRegion 0 200.13 9.01 7.07 9.77 60.41 6.14 12.22 30.22 14.45 4.17 75.96 45.18 69.82 63.08 72.94 71.70 70.43 0.76 0.00 9.33 23.87 85.60 31.52 81 I13_SR2 SilentIntronRegion 0 206.57 9.96 8.58 3.82 73.05 10.82 6.62 21.61 7.90 5.16 54.12 43.29 116.31 51.32 71.66 102.24 72.95 0.00 0.00 2.77 25.34 53.34 19.97 82 I13_AR3 ActiveIntronRegion 0 148.32 9.43 2.93 4.16 46.89 6.36 12.57 21.95 6.39 2.85 53.29 45.23 60.81 40.79 59.15 34.16 38.00 0.47 0.00 3.67 10.71 41.39 18.38 83 E14_Aa NovelBoundary 0 209.15 24.93 13.22 8.76 57.81 0.00 14.88 23.00 16.70 3.28 30.32 37.36 74.02 38.26 114.35 49.22 29.73 0.00 0.00 9.01 2.97 104.34 26.29 84 ER14a ExonRegion 1 794.83 157.75 110.80 107.63 326.16 40.60 60.78 209.83 84.34 55.97 664.52 1131.30 1148.02 760.39 1443.08 528.90 547.79 1.22 0.00 37.86 124.95 1175.83 268.08 85 ER14b ExonRegion 1 217.15 137.88 6.49 5.59 64.22 0.00 9.14 20.57 6.92 9.12 19.14 429.92 344.95 45.48 225.43 34.33 3.80 0.00 0.00 2.77 0.00 81.78 22.17 86 ER14c ExonRegion 0 46.56 43.38 1.23 0.45 18.73 0.00 5.74 3.46 2.88 1.91 3.22 124.11 87.55 10.83 39.65 9.91 0.00 0.00 0.00 1.42 0.00 10.42 9.79 87 ER14d ExonRegion 0 17.46 12.71 0.31 0.00 10.03 0.00 1.32 1.73 0.62 1.15 0.48 35.72 38.69 3.25 13.78 2.97 0.00 0.00 0.00 0.00 0.00 1.04 5.14 88 IG12 Intergenic 0 12.36 2.14 0.11 1.13 7.42 0.96 2.01 1.28 1.34 0.05 4.01 12.95 1.83 11.60 10.67 2.00 1.35 0.00 0.09 1.99 0.13 0.18 0.86 89 IG12_SR1 SilentIntergenicRegion 0 11.11 6.81 0.00 3.50 2.40 0.00 1.78 0.00 0.95 0.00 0.76 6.24 0.76 3.34 4.58 3.28 1.75 0.00 0.00 2.85 0.43 0.41 1.50 90 IG12_AR1 ActiveIntergenicRegion 0 24.69 11.86 0.00 4.32 13.38 0.00 3.97 2.30 1.24 0.00 0.00 17.32 0.00 7.58 7.74 7.43 6.60 0.00 0.00 6.38 0.00 0.00 5.38 91 IG12_SR2 SilentIntergenicRegion 0 12.53 1.28 0.13 0.70 8.28 1.14 2.04 1.50 1.41 0.06 4.60 14.12 2.02 13.08 11.76 1.75 1.26 0.00 0.11 1.82 0.08 0.14 0.73