Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 KLHDC9 Gene 0 1.91 6.70 13.22 9.56 11.54 31.00 4.14 21.92 30.70 14.50 6.59 3.27 3.38 10.63 15.44 11.05 9.58 6.73 14.54 9.17 3.04 0.94 1.65 2 474785 Transcript 0 0.89 0.00 0.00 0.00 0.92 0.06 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 3 469647 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 444550 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 392191 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 392192 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 452810 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 471613 Transcript 0 1.15 2.37 18.43 10.75 9.83 25.76 4.15 26.27 25.73 12.97 2.82 4.54 5.57 9.73 6.16 12.33 2.20 6.32 17.06 6.34 0.71 0.73 1.07 9 490724 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 368011 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 494418 Transcript 0 0.00 0.00 0.00 0.00 0.00 4.32 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 475934 Transcript 0 0.76 6.84 4.31 3.27 13.56 29.21 2.87 7.66 19.57 5.62 1.40 4.69 5.47 4.08 4.23 4.17 3.30 4.05 16.63 6.47 0.00 0.00 1.71 13 ER1a ExonRegion 0 0.89 0.00 0.00 0.00 0.92 0.06 0.00 0.00 0.32 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.38 0.00 0.00 0.00 0.00 0.00 14 E1_Ab KnownBoundary 0 3.26 0.00 0.00 0.00 4.33 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 15 E1_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.95 0.00 0.00 0.00 0.00 0.00 16 E1_Af NovelBoundary 0 0.00 0.00 0.00 0.00 11.71 15.84 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.12 4.33 0.00 0.00 1.91 0.00 2.56 0.00 0.00 0.00 17 ER1b ExonRegion 0 2.12 0.00 0.00 0.00 2.68 1.83 0.00 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.70 0.00 0.00 0.00 0.00 0.00 18 ER1c ExonRegion 0 1.65 0.00 0.20 0.23 7.28 9.78 0.22 2.21 3.43 2.23 0.32 0.00 0.00 1.08 1.93 1.98 1.83 4.62 0.18 2.13 0.00 0.00 0.16 19 E1_Da KnownBoundary 0 0.00 2.89 0.00 0.00 22.50 13.40 4.15 0.00 3.59 3.33 0.00 0.00 0.00 2.35 4.45 8.63 0.00 2.20 4.80 0.00 0.00 0.00 4.18 20 E1a_E1h KnownJunction 0 9.93 5.66 2.93 5.53 4.24 84.72 3.93 13.31 4.66 7.95 5.00 0.00 0.00 16.83 8.90 11.19 8.79 13.06 8.94 17.19 0.00 2.94 4.35 21 ER1d ExonRegion 0 2.12 0.00 1.23 1.36 10.70 42.18 1.32 5.19 4.94 5.73 1.93 0.00 0.00 4.87 5.80 5.94 3.30 7.39 3.19 4.26 0.00 0.00 2.94 22 ER1e ExonRegion 0 2.96 0.81 1.47 2.32 12.31 50.61 2.91 8.30 4.94 6.31 2.51 0.00 0.00 8.12 12.19 11.00 4.29 7.39 7.33 7.45 0.00 1.46 5.29 23 ER1f ExonRegion 0 5.71 5.29 2.45 3.54 21.14 73.35 6.88 11.41 4.94 9.06 3.87 0.00 0.00 12.99 14.51 19.62 7.59 7.39 9.56 15.32 0.00 2.08 5.87 24 ER1g ExonRegion 0 0.00 2.13 2.24 1.36 17.23 22.41 3.52 4.51 7.23 8.42 0.57 0.00 0.00 2.81 5.09 5.65 0.00 2.52 2.18 2.13 0.00 0.00 2.36 25 E1_Ag KnownBoundary 0 0.00 0.00 3.67 2.03 3.65 13.00 0.00 7.15 7.12 11.28 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.87 0.00 0.00 0.00 0.00 0.00 26 ER1h ExonRegion 0 0.00 2.26 2.42 1.10 0.89 8.10 2.43 4.32 10.64 7.68 3.87 2.16 0.00 1.76 0.00 0.00 0.00 2.51 0.00 1.71 0.00 0.00 0.00 27 E1_Db KnownBoundary 0 0.00 2.89 0.00 0.00 0.00 4.88 4.15 0.00 9.75 1.67 4.84 6.30 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.20 0.00 0.00 0.00 28 E1b_E1h KnownJunction 0 0.00 0.00 0.00 0.00 0.00 4.32 0.00 0.00 1.56 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 ER1i ExonRegion 0 0.03 0.16 2.57 1.27 0.33 2.47 0.42 3.88 9.33 6.15 1.81 0.56 0.00 2.55 3.07 2.94 2.16 1.37 2.93 3.24 0.85 0.59 0.02 30 E1_Ah KnownBoundary 0 0.00 0.00 0.00 5.13 3.65 10.11 3.49 8.67 14.53 4.24 0.00 0.00 0.00 6.77 0.00 11.45 4.21 2.07 4.24 5.69 3.09 0.00 0.00 31 ER1j ExonRegion 0 1.75 3.91 11.62 8.79 5.41 38.82 3.90 19.73 23.60 14.76 4.82 2.44 2.75 11.20 14.28 10.04 12.45 7.25 12.28 10.26 3.00 0.99 1.01 32 E1_Dc KnownBoundary 0 0.00 0.00 14.01 12.05 3.82 9.20 0.00 25.63 19.70 21.68 0.00 0.00 6.82 10.60 9.64 15.89 0.00 11.65 20.61 3.26 2.59 0.00 0.00 33 E1c_E1i KnownJunction 0 3.78 12.43 6.36 1.23 0.00 36.63 1.99 19.63 30.79 8.49 14.27 6.30 0.00 14.36 9.64 7.78 12.81 9.70 3.76 9.27 0.00 0.00 3.24 34 E1c_E2c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.90 2.03 0.00 8.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.41 0.00 0.00 35 ER1k ExonRegion 0 1.15 2.37 18.43 10.75 9.83 25.76 4.15 26.27 25.73 12.97 2.82 4.54 5.57 9.73 6.16 12.33 2.20 6.32 17.06 6.34 0.71 0.73 1.07 36 E1_Ai KnownBoundary 0 0.00 3.35 18.72 0.00 18.25 36.12 8.44 14.09 14.99 9.97 0.00 0.00 6.82 4.65 0.00 7.86 4.49 8.95 3.76 5.62 3.15 0.00 0.00 37 ER1l ExonRegion 0 4.73 12.94 23.09 8.88 20.14 42.94 7.04 32.26 44.48 15.48 17.07 2.77 1.24 21.16 25.31 13.42 11.09 11.65 14.11 16.87 1.99 0.43 1.75 38 E1_Dd KnownBoundary 0 6.74 12.89 23.03 16.48 23.94 49.86 17.58 36.35 44.01 15.39 16.79 12.00 6.01 14.60 19.78 27.69 9.44 0.00 16.19 8.31 2.72 2.82 0.00 39 ER1m ExonRegion 0 7.98 18.30 22.87 16.10 20.11 42.45 9.30 38.88 57.89 21.21 14.29 3.58 0.00 19.45 28.28 20.57 20.79 12.02 26.03 11.69 2.99 1.41 1.72 40 E1_De NovelBoundary 0 0.00 8.62 0.00 1.56 14.60 23.11 0.00 3.57 5.12 0.00 0.00 6.00 0.00 2.35 0.00 3.59 0.00 3.61 0.00 2.81 0.00 0.00 3.59 41 E1e_E2a NovelJunction 0 0.00 0.00 13.45 2.06 8.32 16.64 6.49 11.30 14.73 1.64 2.58 0.00 7.95 0.00 0.00 4.19 0.00 2.32 4.42 3.13 0.00 0.00 4.18 42 E1e_E2b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 5.22 0.00 0.00 3.01 2.93 2.26 0.00 0.00 0.00 0.00 0.00 9.54 0.00 0.00 2.43 0.00 0.00 0.00 43 E1e_E2c KnownJunction 0 0.00 6.18 24.45 17.01 18.34 37.08 0.00 39.68 53.33 15.79 18.06 0.00 0.00 14.54 30.16 36.40 8.70 23.75 34.82 8.25 2.47 3.12 0.00 44 E2_Aa NovelBoundary 0 0.00 0.00 1.48 3.03 25.98 0.00 3.36 1.81 3.76 2.36 0.00 6.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45 ER2a ExonRegion 0 0.76 6.84 4.31 3.27 13.56 29.21 2.87 7.66 19.57 5.62 1.40 4.69 5.47 4.08 4.23 4.17 3.30 4.05 16.63 6.47 0.00 0.00 1.71 46 E2_Ab KnownBoundary 0 3.78 2.83 4.64 5.59 14.86 32.14 8.57 11.87 30.53 12.46 0.00 0.00 0.00 2.47 4.45 7.01 4.58 3.23 12.42 6.07 0.00 0.00 8.71 47 E2_Ac KnownBoundary 0 0.00 0.00 9.70 3.40 28.86 33.73 0.00 17.54 16.87 3.87 0.00 0.00 0.00 2.12 10.75 8.72 4.49 4.77 4.61 0.00 0.00 0.00 0.00 48 ER2b ExonRegion 0 2.12 1.82 10.77 6.53 23.38 48.74 7.60 15.74 34.19 14.31 2.03 0.00 0.00 6.58 11.91 11.89 13.72 4.38 11.40 5.04 0.23 0.11 7.57 49 ER2c ExonRegion 0 1.57 14.76 23.08 18.90 28.76 72.30 8.82 44.18 72.88 31.84 15.08 2.61 4.05 21.75 36.92 24.98 23.65 17.77 29.56 15.65 9.10 2.10 6.38 50 E2_Da KnownBoundary 0 0.00 20.39 17.03 18.01 40.49 54.29 10.64 28.46 50.14 28.34 8.05 0.00 0.00 11.95 23.98 26.92 23.19 9.16 4.71 12.91 6.18 5.94 4.27 51 E2_Db KnownBoundary 0 6.00 37.62 13.63 13.05 24.79 31.80 4.33 44.98 49.88 20.28 7.74 6.30 0.00 9.42 23.24 23.07 17.95 11.94 34.82 16.68 7.78 2.94 0.00 52 ER2d ExonRegion 0 3.33 33.41 19.52 24.14 43.96 48.46 8.42 52.96 70.40 35.96 12.98 6.18 0.34 18.68 44.14 34.60 29.24 15.57 24.35 17.93 9.92 6.25 0.42 53 ER2e ExonRegion 0 6.35 23.12 14.64 21.16 29.01 28.04 4.46 43.53 72.94 26.44 15.26 6.84 7.28 16.33 39.17 32.38 20.33 10.50 34.79 19.09 11.54 2.30 5.33 54 E2_Dc NovelBoundary 0 3.41 0.00 0.00 1.96 0.00 25.84 5.65 9.24 1.27 13.03 0.00 0.00 0.00 2.47 10.63 0.00 4.58 0.00 9.60 6.20 2.53 0.00 12.04 55 E2c_E3a KnownJunction 0 6.89 11.77 11.38 18.35 27.67 31.46 4.11 36.35 70.54 19.77 14.00 0.00 6.82 18.54 25.84 31.19 16.74 4.23 30.31 18.79 14.21 0.00 7.94 56 I2 Intron 0 1.64 5.50 9.17 4.32 10.86 27.28 3.84 14.43 16.72 12.55 4.48 4.82 2.88 4.74 10.78 10.33 7.66 4.08 15.38 6.99 0.43 0.40 2.84 57 I2_AR1 ActiveIntronRegion 0 1.65 5.54 9.24 4.35 10.94 27.49 3.87 14.54 16.84 12.64 4.52 4.86 2.90 4.78 10.86 10.41 7.72 4.11 15.50 7.04 0.43 0.41 2.86 58 E3_Aa NovelBoundary 0 3.78 0.00 13.84 16.58 3.74 15.28 6.76 26.00 18.34 8.33 2.47 13.95 0.00 12.01 0.00 7.95 3.83 2.07 25.79 9.08 0.00 0.00 0.00 59 ER3a ExonRegion 0 2.32 10.63 19.22 15.14 15.35 32.34 4.37 29.36 44.80 18.74 11.86 7.65 6.96 13.59 25.30 11.12 13.12 5.05 20.26 14.04 6.65 1.20 1.42 60 E3_Da KnownBoundary 0 0.00 27.63 14.99 17.81 24.53 12.55 5.61 26.00 24.68 19.07 7.32 0.00 21.75 4.53 15.33 0.00 8.79 2.11 4.71 11.51 0.00 2.51 3.76 61 ER3b ExonRegion 1 0.00 13.31 7.60 8.84 6.50 3.35 0.91 11.75 14.12 8.55 3.70 0.00 10.59 2.37 24.20 0.00 6.51 1.64 2.91 5.11 0.00 0.60 1.09 62 ER3c ExonRegion 0 0.00 0.00 0.00 1.36 0.00 0.00 0.00 0.00 3.71 1.15 1.93 0.00 0.00 1.62 5.80 0.00 3.30 0.00 0.00 0.00 0.00 0.00 0.00 63 ER3d ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 1.15 0.00 0.00 0.00 0.81 2.90 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00