Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 IGSF8 Gene 0 74.15 54.45 121.63 119.15 34.25 40.81 19.82 90.35 122.16 88.94 108.12 12.27 17.93 73.65 131.04 63.19 70.71 72.78 49.33 58.32 79.82 113.73 120.71 2 448417 Transcript 0 4.24 39.87 1.65 7.95 1.95 29.93 0.00 6.17 2.77 0.88 0.01 0.00 0.00 0.00 0.00 0.00 0.00 10.53 16.76 5.30 1.23 0.00 7.21 3 314485 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 368086 Transcript 0 1.85 5.92 14.06 16.36 11.98 1.18 1.95 15.03 13.21 7.96 24.92 6.04 1.07 7.45 12.92 13.57 15.96 6.80 1.79 6.98 14.71 11.64 23.22 5 358475 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 460351 Transcript 0 2.09 2.17 2.11 2.33 7.57 3.60 0.72 13.21 10.49 5.40 12.84 0.10 4.20 7.24 6.37 6.05 2.05 7.56 3.73 8.71 0.73 2.13 6.55 7 ER1a ExonRegion 0 0.92 8.97 0.40 1.96 0.00 5.12 0.00 1.45 0.89 0.26 0.02 0.00 0.00 0.00 0.00 0.00 0.00 2.99 5.10 1.20 0.18 0.00 2.72 8 E1a_E2c KnownJunction 0 7.56 70.78 2.90 13.95 3.90 54.74 0.00 10.88 4.66 1.50 0.00 0.00 0.00 0.00 0.00 0.00 0.00 18.07 28.42 9.40 2.29 0.00 11.69 9 E1a_E3b NovelJunction 0 11.34 3.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 ER2a ExonRegion 0 0.83 0.00 0.00 1.23 0.00 0.83 0.47 0.00 1.76 0.69 1.91 0.00 0.99 0.30 3.64 0.96 0.33 0.34 4.80 0.00 0.68 1.29 7.82 11 E2_Ab KnownBoundary 0 9.48 0.00 0.00 1.33 0.00 2.73 1.99 0.00 4.28 4.49 10.37 0.00 6.82 2.53 18.54 6.92 0.00 3.36 0.00 0.00 2.35 3.18 12.21 12 ER2b ExonRegion 0 12.66 7.48 3.72 2.57 0.29 5.43 6.94 1.76 3.56 4.00 11.12 2.72 4.14 6.69 16.55 7.40 5.89 5.85 5.00 3.23 12.51 18.18 22.74 13 E2_Ac KnownBoundary 0 14.15 8.22 4.29 5.56 0.00 5.74 3.75 7.52 3.15 2.26 9.69 11.55 5.84 0.00 13.35 3.25 4.49 3.94 0.00 0.00 2.53 8.76 3.24 14 ER2c ExonRegion 0 32.53 23.76 18.86 19.60 19.62 28.25 8.07 18.31 15.85 20.07 44.01 6.01 1.04 25.22 62.59 34.01 19.38 22.33 27.02 14.09 25.87 32.82 39.78 15 E2a_E3b KnownJunction 0 0.00 8.68 26.52 27.34 11.29 2.56 0.00 8.05 19.01 25.22 33.59 12.60 12.50 19.25 60.94 3.76 13.84 19.36 33.04 9.78 27.24 57.87 42.17 16 E3_Aa NovelBoundary 0 6.52 12.89 15.85 6.09 7.13 15.79 2.16 24.19 27.26 12.44 9.48 0.00 0.00 4.59 8.90 0.00 0.00 12.15 19.95 9.46 3.15 10.47 7.26 17 ER3a ExonRegion 0 2.09 2.17 2.11 2.33 7.57 3.60 0.72 13.21 10.49 5.40 12.84 0.10 4.20 7.24 6.37 6.05 2.05 7.56 3.73 8.71 0.73 2.13 6.55 18 E3_Ab KnownBoundary 0 11.11 2.96 1.54 4.89 3.74 21.58 1.63 27.03 20.08 18.05 21.37 0.00 13.31 4.94 4.45 20.25 8.98 10.20 3.86 11.19 6.05 5.51 7.85 19 ER3b ExonRegion 0 33.21 43.71 94.24 93.27 20.45 42.79 14.60 63.43 99.83 67.87 115.60 12.30 18.96 73.71 115.10 57.48 72.68 67.81 49.92 45.36 97.92 120.53 121.50 20 E3_Da NovelBoundary 0 46.30 22.10 17.18 60.20 19.95 18.06 3.84 30.39 26.50 16.90 5.05 0.00 0.00 20.54 10.75 19.05 0.00 15.84 21.84 16.55 8.65 5.51 19.04 21 E3a_E4a KnownJunction 0 49.42 23.88 102.07 66.96 10.78 78.93 18.68 65.10 87.50 55.47 133.14 11.25 6.33 63.04 90.86 32.90 72.00 84.32 39.91 48.83 111.14 138.45 144.43 22 I3 Intron 0 26.39 20.81 19.70 42.97 21.74 23.12 6.31 36.81 25.53 23.71 21.94 5.60 5.64 18.47 14.30 7.50 5.55 8.62 15.62 12.82 6.48 20.73 18.52 23 I3_AR1 ActiveIntronRegion 0 26.54 20.92 19.81 43.21 21.86 23.25 6.34 37.01 25.67 23.84 22.06 5.63 5.67 18.57 14.38 7.54 5.58 8.67 15.71 12.89 6.52 20.84 18.62 24 E4_Aa NovelBoundary 0 42.75 45.65 38.41 56.94 24.02 15.33 5.65 58.24 62.76 43.22 13.95 6.30 0.00 7.53 19.66 8.63 13.93 33.04 26.73 17.00 7.78 6.12 24.58 25 ER4a ExonRegion 0 51.81 69.11 171.50 151.00 47.64 44.86 24.50 119.45 172.75 101.49 117.91 14.72 21.25 109.13 146.53 59.02 84.78 88.08 54.08 85.06 96.98 123.88 134.00 26 E4_Da KnownBoundary 0 76.09 87.16 182.05 179.40 83.96 65.47 27.82 183.40 229.34 144.46 124.72 18.61 6.17 112.78 167.13 81.69 106.87 111.30 70.59 97.86 89.89 97.48 144.86 27 ER4b ExonRegion 1 53.46 58.20 139.84 140.16 40.62 42.10 19.91 113.32 142.19 99.46 111.22 14.72 3.85 122.10 135.78 59.56 74.80 69.18 47.33 72.85 82.60 103.59 119.17 28 E4_Db NovelBoundary 0 3.48 27.89 51.12 36.83 19.02 7.50 5.61 85.15 105.64 81.74 9.16 0.00 0.00 0.00 4.45 4.36 11.22 24.29 14.12 54.65 0.00 2.45 4.10 29 E4b_E5a KnownJunction 0 63.86 46.44 143.25 175.37 19.61 25.16 24.25 91.72 113.34 94.15 98.60 6.30 6.82 79.93 85.30 32.30 67.60 99.32 46.68 64.68 78.15 111.75 88.61 30 I4 Intron 0 9.71 22.77 42.14 31.79 25.63 4.70 7.50 68.46 94.11 59.72 9.13 0.48 0.00 4.46 4.17 4.01 4.45 19.83 22.35 23.26 2.68 2.81 6.34 31 I4_AR1 ActiveIntronRegion 0 9.76 22.88 42.36 31.95 25.77 4.73 7.54 68.83 94.61 60.04 9.18 0.48 0.00 4.48 4.19 4.03 4.48 19.93 22.47 23.38 2.69 2.83 6.37 32 E5_Aa NovelBoundary 0 0.00 7.89 59.31 29.40 16.30 2.90 9.10 46.33 121.58 60.47 2.68 6.30 0.00 0.00 0.00 11.54 4.39 13.97 13.65 27.16 0.00 0.00 7.00 33 ER5a ExonRegion 0 67.67 65.31 144.74 126.15 36.77 46.39 25.19 118.53 142.74 121.19 113.23 8.38 13.77 87.64 147.81 71.70 83.43 90.23 51.86 80.48 93.68 115.97 127.17 34 E5_Da NovelBoundary 0 47.86 12.30 86.28 127.76 14.77 13.46 15.02 91.14 128.38 94.66 49.59 0.00 0.00 19.90 33.13 12.82 25.25 57.83 26.17 32.53 18.41 18.25 56.68 35 E5a_E6a KnownJunction 0 42.23 63.28 123.12 77.25 15.20 58.49 14.93 70.28 65.94 59.53 118.14 0.00 13.64 82.35 169.23 58.87 77.70 56.87 32.57 39.25 91.99 73.05 140.59 36 I5 Intron 1 44.98 18.20 46.56 58.60 26.93 10.25 5.63 46.09 76.17 61.17 26.37 0.80 0.86 16.69 25.39 17.95 6.65 23.22 19.95 35.22 13.31 17.71 34.16 37 I5_AR1 ActiveIntronRegion 1 45.37 18.36 46.98 59.11 27.16 10.35 5.67 46.49 76.84 61.70 26.61 0.80 0.87 16.83 25.61 18.11 6.70 23.42 20.13 35.52 13.43 17.87 34.46 38 E6_Aa NovelBoundary 0 62.68 29.47 54.49 60.57 22.92 14.71 7.51 76.77 93.69 80.26 27.32 0.00 0.00 11.83 0.00 18.80 8.60 24.46 35.86 53.12 8.22 17.76 15.02 39 ER6a ExonRegion 0 110.67 66.79 156.56 104.66 22.09 47.36 19.08 104.57 130.93 96.42 111.84 8.11 15.73 84.28 171.07 60.77 73.28 90.86 34.32 76.87 87.07 129.06 136.26 40 E6_Da KnownBoundary 0 203.15 54.99 174.09 132.75 19.95 35.43 24.16 114.76 145.43 109.70 90.55 0.00 29.06 61.39 116.94 61.61 71.34 86.84 38.78 53.75 78.09 99.08 124.12 41 E6a_E6b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42 ER6b ExonRegion 0 170.48 90.41 168.96 171.75 52.78 70.45 34.91 120.20 177.85 142.68 134.80 13.48 23.45 98.23 200.99 95.26 103.00 105.12 66.37 78.64 101.68 152.36 160.95 43 E6_Ab KnownBoundary 0 184.77 115.24 261.17 322.57 76.66 99.09 36.74 234.74 299.65 218.55 223.85 30.46 45.94 82.76 234.63 166.88 159.79 197.98 148.33 138.13 166.61 241.14 269.75 44 ER6c ExonRegion 0 94.34 72.77 203.73 258.56 57.66 74.09 22.44 169.68 227.29 157.48 229.74 20.31 32.50 99.23 288.33 139.90 139.66 130.35 102.69 95.59 143.77 249.08 234.72 45 E6_Db NovelBoundary 0 6.96 17.89 14.22 13.78 14.94 4.83 14.57 40.58 86.78 58.08 6.63 0.00 0.00 13.36 0.00 12.73 17.11 33.45 29.93 50.75 0.00 2.51 3.67 46 E6b_E7a KnownJunction 0 74.83 70.78 202.42 264.24 63.24 50.60 15.55 159.74 193.00 119.40 197.47 12.15 20.13 118.84 400.40 128.34 106.78 121.96 90.73 80.02 147.65 267.41 284.26 47 I6 Intron 0 13.53 8.77 30.14 22.65 19.49 1.64 5.51 36.00 59.13 44.97 7.76 0.53 2.30 6.14 5.48 10.16 4.42 14.76 20.37 22.46 1.64 3.72 4.37 48 I6_AR1 ActiveIntronRegion 0 13.61 8.82 30.31 22.78 19.61 1.65 5.54 36.21 59.47 45.23 7.79 0.53 2.31 6.17 5.51 10.22 4.44 14.84 20.49 22.59 1.65 3.74 4.38 49 E7_Aa NovelBoundary 0 43.27 18.42 35.63 20.51 19.02 0.00 0.00 58.78 97.94 64.25 14.42 0.00 0.00 7.06 4.45 0.00 14.03 17.58 26.07 36.05 3.15 2.27 7.85 50 ER7a ExonRegion 0 95.68 71.61 258.02 302.54 62.89 51.88 23.47 191.20 214.81 169.93 237.63 37.38 41.49 118.06 290.08 162.83 136.19 132.01 124.74 93.34 147.26 283.07 303.91 51 E7_Da NovelBoundary 0 121.35 34.93 64.34 47.08 64.26 2.44 26.01 62.06 91.29 70.92 35.17 0.00 0.00 19.07 13.72 40.84 23.00 66.62 84.90 47.43 9.27 26.58 46.95 52 E7a_E8a KnownJunction 0 0.00 3.03 4.23 11.59 12.48 0.00 2.25 7.80 6.25 3.55 20.69 6.30 0.00 4.94 4.45 12.65 12.25 2.45 0.00 5.37 9.95 7.65 21.60 53 E7a_E8b KnownJunction 0 68.46 53.54 155.82 187.69 29.29 21.18 12.90 159.90 156.05 121.17 288.28 31.66 41.39 101.77 194.33 81.26 169.52 66.28 65.04 73.95 164.88 124.12 120.45 54 I7 Intron 0 3.07 12.37 17.99 19.42 12.41 1.06 2.69 23.88 34.15 20.80 6.16 3.32 2.24 4.65 7.71 8.61 8.61 15.17 14.77 15.41 1.92 4.23 3.40 55 I7_AR1 ActiveIntronRegion 0 3.10 12.52 18.18 19.64 12.55 1.07 2.72 24.15 34.53 21.02 6.23 3.36 2.26 4.69 7.80 8.71 8.71 15.33 14.94 15.59 1.94 4.27 3.44 56 E8_Aa NovelBoundary 0 3.70 6.18 23.36 6.86 8.40 0.00 1.77 39.10 58.48 37.63 17.06 0.00 0.00 5.06 4.45 0.00 12.90 12.02 8.28 18.98 3.15 2.39 4.35 57 E8_Ab NovelBoundary 0 6.59 12.23 43.02 16.12 4.07 7.27 0.00 29.29 35.85 27.86 20.58 0.00 6.82 4.94 28.43 8.20 13.65 22.30 3.67 15.40 14.83 13.78 22.11 58 ER8a ExonRegion 0 3.70 8.81 23.89 21.12 11.48 2.37 1.65 22.25 20.17 12.38 29.15 5.77 2.15 9.95 21.40 14.49 19.67 11.16 3.58 8.60 19.47 15.63 24.84 59 ER8b ExonRegion 0 181.50 64.34 124.21 149.82 51.24 41.09 26.54 96.57 140.06 98.88 141.53 20.50 32.69 58.09 128.79 74.74 72.67 75.92 58.43 48.10 73.26 133.31 134.24 60 ER8c ExonRegion 0 8.73 7.88 2.76 6.81 6.69 7.11 3.64 4.11 2.01 5.73 6.52 0.00 2.35 4.67 2.54 2.23 2.89 0.92 2.79 4.79 0.83 2.86 5.87 61 IG37 Intergenic 0 0.76 3.78 10.30 9.14 7.46 0.00 2.65 24.84 49.31 26.98 0.00 0.00 0.00 0.10 0.96 0.00 0.47 12.20 10.01 18.84 0.00 0.00 0.00 62 IG37_SR2 SilentIntergenicRegion 0 2.13 2.58 11.97 11.95 8.01 0.00 3.27 27.50 61.08 34.16 0.00 0.00 0.00 0.28 1.91 0.00 0.00 16.73 15.49 20.29 0.00 0.00 0.00 63 IG37_AR1 ActiveIntergenicRegion 0 0.08 5.28 11.38 10.39 6.75 0.00 2.71 30.04 52.85 28.11 0.00 0.00 0.00 0.00 0.36 0.00 0.49 11.94 7.16 20.62 0.00 0.00 0.00 64 IG37_SR1 SilentIntergenicRegion 0 0.00 2.10 4.54 0.80 8.40 0.00 1.37 6.63 18.94 11.12 0.00 0.00 0.00 0.00 0.80 0.00 1.29 4.69 7.50 11.82 0.00 0.00 0.00