Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 F11R Gene 0 70.20 4.42 52.29 16.51 67.08 8.04 33.84 38.46 71.69 11.39 84.85 50.14 40.01 87.86 143.65 212.59 79.23 2.21 5.06 3.75 4.02 10.74 13.66 2 470694 Transcript 0 1.89 0.00 1.03 0.00 4.51 0.00 7.94 0.00 1.76 0.00 1.02 0.00 0.00 2.99 4.28 13.61 9.03 0.00 0.00 0.00 0.00 0.00 0.00 3 289779 Transcript 0 0.00 0.00 1.17 0.00 0.73 0.00 0.60 1.08 2.16 0.00 0.42 0.00 0.00 1.45 0.45 0.65 1.25 0.40 0.69 0.00 0.00 0.04 0.00 4 335772 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 368026 Transcript 0 36.38 3.08 20.92 7.81 34.75 4.67 17.37 18.65 30.14 5.51 29.58 21.74 19.16 31.41 61.62 76.14 29.30 1.97 3.42 3.40 2.21 4.49 6.38 6 436182 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 472573 Transcript 0 1.66 0.00 0.77 1.71 5.04 0.00 0.70 1.86 4.26 1.33 5.87 1.95 0.64 3.66 10.13 8.97 4.66 0.00 0.12 0.00 0.13 0.25 0.35 8 ER1a ExonRegion 0 1.89 0.00 1.03 0.00 4.51 0.00 7.94 0.00 1.76 0.00 1.02 0.00 0.00 2.99 4.28 13.61 9.03 0.00 0.00 0.00 0.00 0.00 0.00 9 E1_Ac KnownBoundary 0 69.94 0.00 3.61 0.00 25.21 0.00 17.53 12.53 18.84 1.67 18.11 0.00 0.00 2.94 11.99 87.67 27.77 0.00 0.00 0.00 0.00 3.06 0.00 10 ER1b ExonRegion 0 2.12 0.00 1.86 0.00 7.33 0.00 9.27 0.00 5.16 0.00 1.93 0.00 0.00 3.25 10.34 17.83 10.33 0.00 2.35 0.00 0.00 0.54 0.00 11 ER1c ExonRegion 0 0.57 0.00 2.69 0.00 6.85 0.00 2.68 1.60 6.33 0.00 0.85 0.00 0.00 1.43 6.01 5.87 5.88 0.00 2.64 0.00 0.00 2.08 0.00 12 E1a_E2a KnownJunction 0 0.00 0.00 1.60 0.00 0.00 0.00 0.00 0.00 3.01 0.00 0.00 0.00 0.00 2.47 0.00 0.00 3.46 0.00 0.00 0.00 0.00 0.00 0.00 13 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.46 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 14 Ix Intron 1 2.88 0.00 3.73 0.69 1.82 0.00 1.35 6.13 8.14 2.32 1.97 0.00 0.00 3.12 7.08 2.02 20.20 0.94 4.33 0.72 0.00 0.00 0.00 15 Ix_AR1 ActiveIntronRegion 0 2.92 0.00 3.78 0.70 1.84 0.00 1.37 6.21 8.25 2.36 2.00 0.00 0.00 3.15 7.17 2.05 20.47 0.95 4.39 0.73 0.00 0.00 0.00 16 I1 Intron 0 19.94 0.15 23.09 1.58 41.58 1.09 22.20 12.23 36.32 0.13 0.72 9.50 9.42 1.65 6.56 11.47 2.69 0.10 4.02 0.24 0.00 0.00 0.65 17 I1_SR1 SilentIntronRegion 0 20.00 0.15 23.16 1.59 41.69 1.09 22.26 12.27 36.43 0.13 0.72 9.53 9.45 1.66 6.58 11.50 2.70 0.10 4.02 0.24 0.00 0.00 0.66 18 I1 Intron 0 20.16 0.11 23.95 0.98 34.26 0.83 17.48 11.36 34.18 0.39 1.09 7.52 7.59 1.83 4.93 8.15 3.55 0.00 3.33 0.06 0.06 0.41 0.25 19 I1_SR1 SilentIntronRegion 0 20.16 0.11 23.95 0.98 34.26 0.83 17.48 11.36 34.18 0.39 1.09 7.52 7.59 1.83 4.93 8.15 3.55 0.00 3.33 0.06 0.06 0.41 0.25 20 E2_Aa NovelBoundary 0 47.19 115.05 5.26 2.76 83.19 68.20 58.87 7.56 13.19 10.74 0.00 0.00 0.00 6.89 0.00 3.93 12.72 7.54 73.98 117.48 8.59 4.90 16.39 21 ER2a ExonRegion 0 0.00 0.00 1.92 0.00 2.20 0.00 1.80 3.24 3.47 0.00 1.26 0.00 0.00 1.87 1.34 1.94 0.30 1.21 2.08 0.00 0.00 0.11 0.00 22 E2_Da NovelBoundary 0 14.15 31.77 42.70 55.64 8.66 14.31 31.84 59.19 79.54 43.84 2.63 6.00 11.69 10.77 0.00 8.37 20.57 54.80 9.13 31.00 2.72 11.57 23.99 23 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 I2 Intron 0 13.19 0.00 24.95 1.28 21.57 0.31 14.08 12.08 51.14 0.59 1.77 11.13 8.31 3.58 6.01 12.57 6.23 0.00 2.55 0.00 0.00 0.71 0.50 25 I2_SR1 SilentIntronRegion 0 14.28 0.00 23.92 1.19 25.05 0.36 16.72 10.97 55.97 0.50 2.13 16.95 9.46 2.41 4.57 10.76 7.59 0.00 0.93 0.00 0.00 0.98 0.29 26 I2_AR1 ActiveIntronRegion 0 11.68 0.00 26.49 1.41 16.69 0.25 10.36 13.68 44.41 0.71 1.26 2.91 6.70 5.26 8.07 15.19 4.31 0.00 4.85 0.00 0.00 0.35 0.81 27 E3_Aa NovelBoundary 0 6.30 0.00 53.07 0.00 48.13 0.00 35.02 34.58 72.40 0.00 0.00 6.15 0.00 12.07 11.50 0.00 9.35 0.00 13.27 0.00 0.00 0.00 0.00 28 ER3a ExonRegion 0 4.95 0.00 16.60 1.91 4.18 0.00 11.60 7.13 26.91 1.71 3.38 2.76 4.87 6.15 3.34 8.88 4.17 0.00 2.03 0.00 0.00 1.04 0.00 29 E3_Da NovelBoundary 0 3.41 0.00 14.61 5.23 17.15 0.00 7.60 8.83 23.29 1.40 2.26 0.00 0.00 2.47 4.45 8.12 18.05 0.00 0.00 0.00 0.00 3.12 0.00 30 E3a_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 E3_Db NovelBoundary 0 3.04 0.00 15.26 2.06 8.15 0.00 1.72 2.01 26.65 0.00 0.00 0.00 6.82 0.00 4.45 4.27 4.77 0.00 0.00 0.00 0.00 0.00 0.00 32 E3b_E4d KnownJunction 0 0.00 0.00 1.30 0.00 0.00 0.00 3.97 3.90 9.92 2.63 0.00 0.00 0.00 2.41 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.06 0.00 33 ER3b ExonRegion 0 1.90 0.00 6.49 2.52 2.41 0.00 3.24 5.01 15.50 1.15 1.26 0.00 0.00 2.60 2.90 2.08 8.25 0.00 0.00 0.00 0.00 4.17 0.00 34 ER4a ExonRegion 0 2.44 0.00 0.38 0.52 2.88 0.00 1.53 0.53 4.09 0.53 1.34 0.00 0.36 2.12 3.79 5.94 0.76 0.00 0.00 0.00 0.00 0.00 0.00 35 E4_Ac KnownBoundary 0 45.86 0.00 5.29 1.80 32.17 0.00 10.69 2.34 16.98 1.53 21.64 6.00 5.68 33.14 37.33 58.53 26.27 0.00 0.00 0.00 0.00 0.00 7.85 36 ER4b ExonRegion 0 24.57 0.00 5.65 2.55 11.75 0.00 6.33 4.36 10.79 3.04 12.35 0.00 0.00 14.90 21.70 34.50 15.50 0.00 0.00 0.00 0.00 0.00 6.00 37 E4_Ad KnownBoundary 1 98.02 2.63 19.37 6.59 26.49 2.61 57.10 13.92 30.18 5.13 86.13 0.00 6.33 94.94 202.11 192.09 110.71 0.00 0.00 0.00 0.00 13.47 3.41 38 ER4c ExonRegion 1 44.38 0.00 11.98 2.77 14.33 0.00 22.51 5.30 21.83 4.92 36.91 0.00 3.93 57.16 117.17 66.25 34.82 0.00 0.00 0.00 0.00 5.31 8.81 39 ER4d ExonRegion 0 11.52 0.00 29.75 6.96 4.01 2.75 20.92 11.88 61.05 8.70 58.31 26.74 18.71 24.33 53.39 72.06 35.57 0.00 1.59 0.00 0.00 9.25 7.83 40 E4a_E5a KnownJunction 0 2.89 0.00 44.74 9.26 10.27 0.00 7.55 37.83 85.88 4.46 56.17 48.32 6.33 43.91 18.91 32.64 52.55 0.00 0.00 0.00 0.00 0.00 0.00 41 I4_AR4 ActiveIntronRegion 0 0.17 0.00 4.59 2.15 2.75 0.00 2.15 4.02 19.29 1.91 0.21 4.50 0.32 1.10 2.71 13.86 5.17 0.00 0.00 0.00 0.00 0.00 0.00 42 ER5a ExonRegion 1 7.64 0.00 46.81 12.27 33.89 0.00 12.36 36.25 107.19 7.11 224.97 31.12 18.49 82.99 107.56 132.11 187.53 0.00 5.12 0.00 5.53 4.71 9.02 43 E5a_E6b KnownJunction 1 17.41 0.00 33.97 18.55 29.71 0.00 18.95 31.83 125.09 13.40 249.59 47.42 46.91 191.07 257.87 290.18 270.41 0.00 9.41 0.00 8.77 16.78 22.62 44 E6_Aa NovelBoundary 0 0.00 0.00 1.83 3.63 4.07 0.00 22.39 0.00 9.55 0.00 2.53 6.30 0.00 7.06 5.19 10.85 9.54 0.00 0.00 0.00 0.00 0.00 0.00 45 ER6a ExonRegion 0 1.66 0.00 0.77 1.71 5.04 0.00 0.70 1.86 4.26 1.33 5.87 1.95 0.64 3.66 10.13 8.97 4.66 0.00 0.12 0.00 0.13 0.25 0.35 46 E6_Ab KnownBoundary 0 7.04 0.00 0.00 1.93 7.56 0.00 4.15 2.55 6.05 4.03 2.16 0.00 0.00 0.00 9.52 3.42 0.00 0.00 0.00 0.00 0.00 0.00 0.00 47 ER6b ExonRegion 0 16.29 0.00 51.12 26.85 46.73 1.19 14.13 43.93 151.06 17.66 181.74 82.56 41.01 201.88 277.51 546.39 181.93 0.00 5.85 0.00 4.05 14.15 32.03 48 E6_Da KnownBoundary 1 33.64 0.00 77.79 43.62 63.50 2.90 18.33 54.34 175.81 19.66 122.87 65.42 32.79 157.22 341.68 900.87 121.36 0.00 8.28 0.00 0.00 14.88 53.61 49 E6a_E6c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 50 ER6c ExonRegion 1 19.99 1.58 69.17 36.72 49.80 1.58 18.02 53.92 143.75 18.64 117.16 54.60 34.91 124.74 269.90 749.55 93.16 0.00 4.60 0.00 0.00 12.56 29.86 51 E6b_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52 E6c_E7a KnownJunction 0 20.08 3.35 88.58 15.28 80.14 5.51 35.60 42.10 99.25 15.66 152.56 72.32 45.13 144.80 212.00 323.50 165.87 0.00 3.67 0.00 2.90 2.27 19.63 53 ER6d ExonRegion 1 20.46 3.39 80.47 30.44 36.57 1.83 19.86 48.40 124.33 16.06 119.20 51.95 37.52 107.19 241.77 503.28 80.32 0.00 6.37 0.00 0.00 10.42 17.62 54 ER6e ExonRegion 0 18.96 3.66 77.98 27.58 47.31 3.67 26.90 45.77 101.77 14.13 139.56 62.52 39.96 130.77 205.41 423.71 116.46 0.00 6.12 0.00 1.41 6.42 17.50 55 ER7a ExonRegion 0 43.70 2.02 71.55 23.35 77.47 6.61 43.99 50.30 110.36 16.67 173.29 84.12 52.45 138.48 187.59 322.16 144.90 0.00 2.71 0.00 1.29 12.83 11.17 56 E7a_E8a KnownJunction 0 149.80 3.35 100.06 39.26 65.20 5.22 18.50 66.33 128.44 17.51 195.58 96.48 46.10 159.99 261.45 370.24 227.96 0.00 4.33 0.00 0.00 24.80 8.62 57 ER8a ExonRegion 0 129.98 1.80 83.20 22.76 68.80 2.88 34.87 61.50 123.88 17.72 172.87 96.89 50.64 164.39 232.00 400.70 171.53 0.00 2.97 0.00 4.99 19.22 17.23 58 E8a_E9a KnownJunction 0 165.96 0.00 76.34 21.41 71.22 5.68 53.13 60.46 112.93 18.13 152.67 56.87 71.91 161.46 243.77 423.48 134.46 0.00 0.00 0.00 5.25 8.39 8.28 59 ER9a ExonRegion 0 121.07 4.86 76.08 25.60 81.20 1.78 42.00 49.30 106.79 12.88 155.00 85.40 59.41 152.81 204.94 367.51 150.84 0.00 2.77 0.00 4.73 18.87 13.36 60 E9_Da KnownBoundary 0 137.58 16.25 85.63 25.67 155.26 2.21 82.94 31.22 119.10 12.92 146.93 117.94 86.52 154.75 266.52 405.02 158.49 0.00 8.85 0.00 6.18 27.86 16.56 61 ER9b ExonRegion 0 95.93 8.73 84.15 24.41 103.25 2.48 53.15 32.08 108.36 12.68 161.11 98.43 68.56 174.07 272.38 368.81 145.72 0.00 4.31 0.00 4.73 29.48 16.58 62 E9b_E10a KnownJunction 0 100.24 0.00 83.23 31.26 76.23 4.71 36.74 40.58 106.94 15.93 169.31 80.13 64.93 179.76 286.42 361.36 120.99 0.00 0.00 0.00 3.03 39.31 15.96 63 ER10a ExonRegion 0 53.70 0.94 86.92 21.57 112.73 8.56 45.81 44.41 119.43 12.69 157.66 63.90 65.79 171.12 248.86 474.08 129.41 0.00 3.89 0.00 4.84 20.64 20.86 64 E10a_E11a KnownJunction 1 31.71 0.00 43.94 16.02 88.29 0.00 40.01 22.55 80.58 0.00 89.97 25.06 80.35 108.19 191.85 463.81 74.33 0.00 4.52 0.00 0.00 6.06 15.62 65 E11a_E12a KnownJunction 0 54.31 0.00 78.12 10.99 121.48 11.58 40.28 24.40 87.67 16.57 144.09 59.42 96.91 155.51 205.95 575.83 108.74 0.00 3.58 0.00 0.00 37.60 24.16 66 ER11a ExonRegion 1 51.61 0.00 104.06 24.01 124.32 7.34 56.42 46.00 145.17 12.97 170.99 64.28 132.04 246.99 347.48 743.03 131.53 0.00 4.90 0.00 0.68 31.89 37.05 67 E12_Aa NovelBoundary 0 0.00 0.00 22.94 1.93 29.63 0.00 6.18 4.93 9.75 3.14 4.95 0.00 6.66 11.48 4.45 24.01 11.50 0.00 0.00 0.00 0.00 2.82 0.00 68 ER12a ExonRegion 0 72.35 1.41 118.16 30.96 131.06 5.16 48.12 65.05 173.87 26.36 225.16 105.94 89.88 225.42 308.78 665.88 172.25 0.00 5.46 0.00 5.49 37.16 40.69 69 E12a_E13a KnownJunction 0 128.10 3.16 107.42 40.15 146.18 2.73 50.35 83.38 175.49 31.67 235.64 165.50 102.59 202.31 364.79 574.55 179.80 0.00 8.85 0.00 9.45 19.41 39.10 70 ER13a ExonRegion 0 93.28 4.32 71.60 18.91 79.76 11.30 43.21 43.05 89.57 14.07 106.82 65.97 50.64 125.19 190.43 294.60 96.44 0.69 3.98 1.83 4.81 13.68 17.37 71 E13_Da KnownBoundary 0 75.35 2.76 50.03 22.11 93.72 11.07 37.19 45.22 65.16 12.92 98.76 68.72 40.09 115.02 135.48 193.28 92.57 4.15 0.00 0.00 0.00 11.88 0.00 72 ER13b ExonRegion 0 101.25 3.19 74.01 21.76 98.05 8.28 38.55 56.35 88.72 14.78 119.65 50.91 41.71 138.70 157.84 251.07 119.72 1.35 3.46 0.00 5.56 9.13 12.37 73 E13_Db KnownBoundary 1 223.52 3.35 101.71 34.26 124.96 6.53 84.97 87.20 131.51 17.35 150.46 24.91 90.25 177.88 262.44 266.60 183.54 0.00 0.00 0.00 6.30 9.86 27.32 74 ER13c ExonRegion 0 92.05 4.15 95.12 30.09 118.33 11.45 47.23 68.26 94.61 10.60 114.87 41.69 44.07 142.87 204.26 293.24 107.25 2.45 1.70 0.00 4.75 11.21 15.70 75 E13_Dc KnownBoundary 0 113.28 0.00 115.46 50.38 152.72 0.00 76.49 52.16 102.49 15.55 88.29 61.37 38.47 125.67 246.37 247.54 113.60 0.00 3.95 0.00 0.00 15.92 26.12 76 ER13d ExonRegion 0 70.32 6.16 41.45 15.09 66.62 9.35 33.21 36.76 56.19 10.49 57.82 43.47 37.96 60.69 119.44 146.34 57.84 3.94 6.84 6.81 4.43 8.98 12.77