Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 NME7 Gene 0 24.00 87.36 63.98 50.28 53.94 82.11 41.77 34.74 31.90 78.22 28.39 35.57 24.14 39.66 48.91 39.45 42.88 18.94 75.63 58.85 25.08 44.70 28.32 2 367811 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 3 485609 Transcript 0 0.00 19.40 3.81 9.86 0.00 5.39 0.00 2.22 5.56 7.28 4.42 0.00 0.00 2.47 0.00 3.59 4.77 10.57 18.07 23.01 0.00 0.00 0.00 4 392104 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 472647 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 491225 Transcript 0 0.43 0.00 1.62 0.00 1.31 0.00 3.24 0.01 0.00 0.68 1.06 2.89 3.11 0.26 0.00 0.00 0.00 0.00 0.00 2.52 0.00 0.42 0.00 7 480478 Transcript 0 0.00 0.00 9.70 4.20 0.00 0.00 0.00 1.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 8 469474 Transcript 0 1.02 0.49 0.00 0.56 2.16 0.00 3.36 0.43 0.30 0.15 0.06 3.83 3.57 0.35 1.19 0.57 0.00 0.00 0.41 1.19 0.00 0.00 0.00 9 483228 Transcript 0 0.00 3.16 0.00 0.00 0.00 0.00 2.21 0.00 2.37 0.00 2.47 19.21 0.00 0.00 0.00 0.00 0.00 2.28 0.00 12.40 0.00 0.00 0.00 10 472984 Transcript 0 2.05 6.20 0.65 0.78 0.83 0.58 0.59 1.59 0.58 2.83 0.19 0.35 0.82 0.26 0.20 0.24 0.31 0.11 0.42 0.39 0.09 0.28 0.14 11 493481 Transcript 0 1.06 0.07 1.50 1.95 0.00 0.07 5.67 2.49 0.84 2.77 1.04 0.77 2.35 1.16 0.00 0.00 0.00 0.00 0.00 1.60 1.10 0.00 1.47 12 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.43 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.66 0.00 0.00 13 ER1b ExonRegion 0 0.00 4.07 0.00 0.00 0.00 3.67 1.32 0.00 1.24 0.00 0.00 0.00 0.00 1.62 0.00 0.00 0.00 0.00 0.00 0.00 2.20 0.00 0.00 14 ER1c ExonRegion 0 0.64 6.97 1.92 1.97 4.02 22.57 3.09 2.81 1.10 1.05 0.00 0.00 0.19 1.22 0.23 0.88 3.30 2.24 0.47 5.81 3.25 0.08 1.01 15 E1_Ad KnownBoundary 0 16.74 15.79 9.28 4.76 6.62 17.60 4.99 4.52 3.70 3.06 0.00 0.00 0.00 0.00 0.00 7.18 10.85 3.73 7.06 7.29 17.11 0.00 9.65 16 ER1d ExonRegion 0 57.26 95.03 68.73 60.46 118.27 273.87 125.54 47.17 48.56 110.37 37.94 2.19 25.29 86.53 114.36 77.88 146.09 21.43 210.38 151.71 43.31 106.91 89.06 17 E1a_E2a KnownJunction 1 16.97 28.74 33.88 43.72 67.40 59.68 28.53 32.61 45.89 98.64 33.32 12.15 24.67 17.89 21.76 33.84 91.07 21.89 71.25 81.81 22.30 30.37 8.54 18 E1a_E2b KnownJunction 0 0.00 2.83 13.69 6.43 11.12 0.00 1.99 11.17 4.98 17.68 2.26 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 E1a_E4a KnownJunction 0 0.00 0.00 9.70 4.20 0.00 0.00 0.00 1.60 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.88 0.00 0.00 0.00 20 E2_Ab NovelBoundary 0 10.08 6.64 6.50 10.29 19.02 17.43 7.73 8.91 20.34 39.19 11.48 12.15 0.00 2.41 4.45 7.78 30.57 5.14 20.14 33.36 20.02 3.12 4.35 21 ER2a ExonRegion 1 10.45 14.55 25.23 26.41 37.46 28.83 17.50 23.66 34.35 69.28 22.65 8.93 5.28 8.58 14.05 22.11 53.12 15.71 37.83 54.92 22.17 13.02 7.80 22 E2_Ac KnownBoundary 1 9.19 22.89 29.54 27.10 29.20 44.01 5.17 23.49 17.45 59.10 60.33 31.81 19.32 4.77 19.66 11.62 133.33 8.17 20.42 61.81 71.41 14.14 3.59 23 ER2b ExonRegion 1 8.24 15.41 33.41 26.83 29.29 31.75 7.25 28.75 28.67 77.57 34.59 28.26 9.63 3.85 9.93 11.73 101.11 9.14 20.12 54.09 56.14 11.73 4.79 24 ER2c ExonRegion 1 4.42 33.96 59.57 51.62 19.48 44.08 13.77 45.94 40.63 116.82 83.08 38.05 18.76 45.22 40.77 60.38 173.79 35.82 181.23 141.36 60.31 59.14 51.78 25 E2a_E3a KnownJunction 1 0.00 45.58 85.77 66.89 27.25 84.50 24.33 66.87 58.56 160.42 66.33 44.56 0.00 131.09 141.54 217.89 188.41 47.96 714.37 217.38 39.78 198.09 237.22 26 E2a_E4a KnownJunction 0 0.00 19.40 3.81 9.86 0.00 5.39 0.00 2.22 5.56 7.28 4.42 0.00 0.00 2.47 0.00 3.59 4.77 10.57 18.07 23.01 0.00 0.00 0.00 27 ER3a ExonRegion 0 11.76 89.98 60.20 50.36 104.11 208.12 84.44 48.84 41.02 103.17 41.08 44.31 38.70 98.25 93.10 105.23 75.68 27.88 228.22 79.86 23.82 82.18 93.29 28 E3a_E4a KnownJunction 1 7.41 171.29 56.71 31.13 112.73 287.85 159.16 40.79 28.50 79.78 45.12 117.49 14.93 38.61 30.78 26.66 67.51 6.34 74.54 39.44 28.60 54.87 31.16 29 E4_Ab NovelBoundary 0 14.60 137.48 47.04 21.04 33.45 91.08 65.27 26.29 17.48 51.57 18.69 11.40 12.99 0.00 14.34 13.42 25.62 8.37 33.04 40.59 9.51 38.27 6.83 30 ER4a ExonRegion 1 19.26 196.65 80.02 47.97 86.16 285.34 125.25 47.71 34.95 89.69 51.61 86.16 28.14 35.24 36.85 24.97 73.28 15.89 77.40 80.64 23.80 59.17 21.73 31 ER4b ExonRegion 1 48.85 191.56 88.42 78.32 80.25 120.58 68.52 48.58 41.77 126.67 32.69 75.70 75.41 55.41 67.22 40.20 69.16 18.97 73.64 100.48 19.86 73.40 35.27 32 E4a_E5b KnownJunction 0 122.76 185.43 125.19 98.99 85.31 150.99 91.46 64.61 56.39 154.62 55.59 99.03 59.41 67.40 38.07 71.78 77.42 23.05 114.83 95.81 22.61 82.48 30.65 33 ER5a ExonRegion 0 2.05 6.20 0.65 0.78 0.83 0.58 0.59 1.59 0.58 2.83 0.19 0.35 0.82 0.26 0.20 0.24 0.31 0.11 0.42 0.39 0.09 0.28 0.14 34 E5_Ab KnownBoundary 0 10.67 6.38 1.83 0.00 0.00 0.00 1.99 2.30 0.00 5.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 35 ER5b ExonRegion 0 81.23 159.88 116.26 86.79 95.10 120.59 69.77 57.87 60.35 157.93 52.85 118.80 71.10 70.10 43.75 62.18 60.67 31.60 103.33 106.55 35.04 79.84 32.19 36 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 37 E5a_E7a KnownJunction 0 0.00 0.00 3.43 0.00 3.57 0.00 0.00 0.00 0.00 1.64 2.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 E5a_E8a KnownJunction 0 59.12 200.16 106.29 89.17 119.61 63.37 84.00 55.33 53.65 150.64 44.80 87.03 66.72 62.75 60.33 63.15 34.13 34.16 117.18 111.34 51.71 103.79 34.91 39 E6_Aa NovelBoundary 0 3.70 0.00 12.00 47.21 0.00 0.00 6.14 5.09 19.76 30.03 0.00 6.00 0.00 0.00 5.44 0.00 3.83 12.19 4.14 18.60 0.00 5.45 0.00 40 ER6a ExonRegion 0 0.00 0.00 0.00 0.00 0.63 0.00 4.67 0.00 0.00 0.02 0.00 1.02 4.07 0.00 0.00 2.05 0.00 0.00 0.00 1.44 0.00 0.00 0.00 41 E6a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 6.62 0.00 1.77 0.00 0.00 0.00 0.00 11.70 6.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42 ER7a ExonRegion 0 1.29 0.00 1.43 0.00 0.35 0.00 5.39 0.02 0.00 0.41 0.48 8.66 2.85 0.77 0.00 0.00 0.00 0.00 0.00 4.31 0.00 1.26 0.00 43 E7_Da NovelBoundary 0 3.33 6.05 70.43 101.29 3.82 0.00 6.32 82.76 42.04 64.66 0.00 6.15 0.00 0.00 0.00 3.50 13.00 19.73 4.80 6.07 0.00 0.00 0.00 44 E7a_E8a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 4.33 0.00 0.00 0.00 0.00 0.00 6.49 0.00 0.00 0.00 0.00 0.00 0.00 3.26 0.00 0.00 0.00 45 ER8a ExonRegion 1 51.45 249.15 104.32 87.78 99.76 95.55 74.40 57.33 53.27 122.45 40.08 110.01 57.87 58.84 67.55 53.85 54.41 36.92 100.65 92.56 46.58 68.11 39.75 46 E8_Da KnownBoundary 1 33.56 234.17 65.49 56.77 89.64 112.89 92.57 43.91 51.39 80.67 38.64 156.65 34.09 76.58 104.95 49.56 45.44 20.64 70.03 78.81 47.26 61.72 20.15 47 E8_Db NovelBoundary 1 34.67 143.86 50.94 68.32 71.82 126.80 53.30 20.70 27.26 62.64 24.32 45.46 28.73 92.77 26.58 68.70 16.74 28.31 83.11 73.31 29.28 41.09 24.24 48 ER8b ExonRegion 1 31.36 209.16 89.27 90.76 85.13 140.59 75.12 46.16 59.47 110.95 40.88 122.67 34.22 91.79 72.21 76.28 44.01 43.73 95.44 92.59 54.28 68.29 21.75 49 E8c_E9a KnownJunction 1 32.82 247.06 144.79 115.44 86.42 147.02 51.49 47.03 60.53 136.81 43.64 115.69 20.13 79.88 87.77 74.77 44.41 57.95 122.54 90.83 76.36 59.34 26.12 50 E8c_E10a KnownJunction 0 0.00 3.16 0.00 0.00 0.00 0.00 2.21 0.00 2.37 0.00 2.47 19.21 0.00 0.00 0.00 0.00 0.00 2.28 0.00 12.40 0.00 0.00 0.00 51 ER8c ExonRegion 1 31.75 198.27 116.24 102.53 74.92 151.54 56.15 42.35 58.27 123.87 38.48 112.76 26.65 90.58 67.65 80.11 42.76 57.11 104.54 96.52 61.70 60.33 23.63 52 ER9a ExonRegion 1 36.58 176.79 112.36 101.95 106.47 157.64 70.96 46.16 52.81 124.62 40.01 83.32 26.06 57.90 75.84 69.28 58.48 39.85 114.85 87.88 58.65 66.28 48.59 53 E9_Da KnownBoundary 0 5.78 2.57 0.00 3.60 0.00 0.00 6.05 2.14 2.43 1.56 2.26 6.30 6.17 4.94 11.50 3.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54 E9a_E10a KnownJunction 0 70.01 212.13 96.09 102.62 73.43 180.52 101.71 56.72 41.15 125.39 36.38 82.53 20.13 72.05 119.54 43.75 39.64 37.76 92.05 97.47 58.13 52.17 23.30 55 ER9b ExonRegion 0 4.06 1.95 0.00 2.25 1.39 0.00 7.00 1.71 1.20 0.57 0.24 2.61 3.40 1.39 4.77 0.21 0.00 0.00 1.66 3.32 0.00 0.00 0.00 56 ER10a ExonRegion 0 48.68 216.81 109.45 78.75 88.38 128.68 85.34 51.72 43.51 119.00 52.46 71.60 27.20 68.51 75.30 59.99 50.63 27.26 102.23 77.28 39.53 48.75 31.63 57 E10a_E11a KnownJunction 0 45.42 214.70 124.45 66.92 173.51 83.19 75.83 38.16 46.32 143.87 38.64 24.91 13.64 64.22 64.65 62.72 46.56 12.23 114.54 63.66 30.02 73.97 24.58 58 ER11a ExonRegion 0 48.71 159.80 129.05 76.60 116.41 111.60 59.73 51.88 45.07 131.59 42.69 33.57 15.70 62.78 75.60 77.23 56.74 27.10 130.51 84.27 68.79 75.31 26.05 59 E11a_E12a KnownJunction 0 38.01 191.94 134.68 94.23 118.08 134.41 57.19 74.92 56.16 124.29 67.02 27.16 40.09 90.00 100.50 89.89 43.29 41.20 130.36 111.22 67.65 91.42 54.38 60 ER12a ExonRegion 0 44.94 147.05 120.28 87.30 70.63 117.71 44.04 70.61 60.39 136.25 60.06 36.23 46.90 72.66 96.25 68.23 52.38 38.37 102.17 95.28 44.79 61.34 45.43 61 E12_Da KnownBoundary 0 76.75 130.83 139.56 97.36 93.55 92.56 62.00 74.59 58.10 160.77 61.86 66.47 82.46 78.82 63.17 65.03 52.83 31.01 99.58 102.71 41.89 61.17 41.91 62 ER12b ExonRegion 0 49.42 139.20 128.79 81.57 99.27 124.33 62.56 67.50 54.84 135.16 62.72 55.42 62.85 77.39 60.49 63.90 64.70 32.89 107.51 83.30 74.60 66.36 41.70 63 E12b_E13a KnownJunction 0 52.75 181.09 159.46 93.59 123.17 145.54 70.44 72.82 49.04 130.39 49.96 37.66 28.57 75.99 116.08 72.46 53.95 40.96 90.07 77.79 100.26 80.64 45.41 64 ER12c ExonRegion 0 39.76 145.11 133.57 87.81 98.24 118.15 63.93 64.20 49.49 129.03 55.92 54.74 31.49 67.40 97.19 71.76 50.22 38.67 97.15 80.39 83.74 69.65 43.21 65 I12_AR2 ActiveIntronRegion 0 10.81 8.62 1.85 10.09 7.02 5.36 6.38 7.15 2.15 7.74 1.13 5.73 2.86 0.00 1.20 0.00 0.00 0.94 3.72 1.87 0.32 0.30 1.29 66 ER13a ExonRegion 0 22.72 111.31 137.75 81.49 76.73 106.63 54.67 66.04 43.63 121.91 49.52 33.49 27.04 51.26 99.07 62.06 45.34 40.22 84.13 73.28 55.87 75.13 31.27 67 E13_Da KnownBoundary 0 16.30 90.64 140.24 93.63 79.12 123.85 59.27 65.68 41.23 119.48 52.80 18.61 43.18 44.97 104.95 56.05 54.98 38.26 108.61 77.98 28.73 85.24 35.68 68 ER13b ExonRegion 0 13.79 74.83 118.36 78.75 64.51 86.46 57.06 66.24 52.88 143.61 52.84 23.52 22.69 55.24 94.45 44.14 53.62 34.96 86.26 79.70 30.35 86.72 34.49 69 E13b_E14a KnownJunction 0 18.52 90.97 120.16 87.33 98.47 117.94 46.06 59.80 59.63 160.04 59.96 18.31 13.47 33.73 78.50 50.24 56.10 17.24 105.60 79.07 40.09 58.85 24.84 70 E13c_E14a KnownJunction 0 0.00 0.00 1.33 0.00 0.00 0.00 1.99 1.77 0.00 3.01 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 71 ER13c ExonRegion 0 2.12 0.15 1.66 3.89 0.00 0.13 9.36 3.21 1.68 2.54 2.07 1.55 4.69 2.32 0.00 0.00 0.00 0.00 0.00 3.19 2.20 0.00 2.94 72 I13_AR6 ActiveIntronRegion 0 3.56 17.57 6.47 13.19 9.04 7.41 20.76 6.88 18.08 11.40 1.51 1.04 3.75 1.66 3.77 1.55 4.75 17.89 15.93 21.49 6.26 7.17 6.28 73 I13_AR7 ActiveIntronRegion 0 8.04 9.47 6.75 16.06 20.77 15.00 23.35 9.21 16.08 10.22 3.69 1.97 5.12 1.89 3.22 2.92 7.38 16.03 16.39 16.13 1.60 5.46 2.24 74 I13_AR8 ActiveIntronRegion 0 1.28 9.29 6.60 18.88 18.89 11.64 14.22 13.70 16.93 14.01 5.12 1.36 5.07 1.75 6.74 3.07 5.95 7.82 14.48 18.51 3.31 10.62 2.77 75 I13_SR6 SilentIntronRegion 0 14.92 19.96 13.89 24.99 21.85 21.83 15.73 13.93 19.41 16.16 3.10 7.17 4.10 4.40 6.22 5.18 7.84 8.00 12.35 16.31 2.91 10.94 6.98 76 I13_AR9 ActiveIntronRegion 1 16.47 18.63 18.11 26.20 18.09 16.34 15.13 10.20 12.53 14.09 3.89 2.28 5.29 2.14 10.68 3.91 6.01 4.98 8.41 16.04 2.53 10.29 2.51 77 E14_Aa NovelBoundary 1 9.78 16.38 32.52 18.21 19.86 18.91 23.76 24.56 17.65 21.57 6.74 7.65 6.49 2.12 24.11 0.00 25.99 6.14 13.55 9.33 5.62 17.15 0.00 78 ER14a ExonRegion 0 25.77 46.09 91.36 70.72 38.17 44.69 22.07 43.45 41.36 90.46 27.82 15.76 20.15 24.17 54.67 26.23 24.93 13.26 45.16 51.16 10.83 44.16 15.20 79 ER14b ExonRegion 0 0.35 10.51 2.25 4.09 1.34 6.72 2.43 0.58 0.00 0.76 0.00 2.16 0.00 0.00 8.70 9.91 0.00 1.85 2.12 0.00 0.00 1.74 0.00