Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RP11-263K19.1 Gene 0 1.55 0.99 2.56 1.48 3.42 3.57 2.74 2.19 4.59 2.39 1.76 1.58 0.94 2.24 1.83 2.71 1.41 2.51 2.33 2.46 6.42 7.23 8.58 2 440904 Transcript 0 1.24 0.52 1.22 0.82 2.18 2.41 1.68 1.15 2.51 1.22 0.92 1.18 0.94 1.19 1.00 1.45 0.76 1.30 1.29 1.40 3.07 3.83 4.61 3 IG4_AR2 ActiveIntergenicRegion 0 0.00 0.00 0.00 0.00 0.00 1.83 0.52 0.00 0.00 0.00 7.94 0.00 0.00 1.57 0.00 0.00 1.18 0.00 0.00 0.00 1.50 0.00 0.00 4 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.19 0.00 0.00 0.18 0.13 0.00 0.00 5 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 I1 Intron 0 0.82 0.00 0.71 0.00 0.00 0.71 1.53 3.98 0.71 0.66 0.00 5.02 1.81 1.03 4.42 1.15 0.00 0.00 1.23 4.95 0.00 2.41 11.35 7 I1_SR1 SilentIntronRegion 0 0.83 0.00 0.72 0.00 0.00 0.72 1.56 4.04 0.72 0.67 0.00 5.10 1.84 1.05 4.49 1.17 0.00 0.00 1.25 5.02 0.00 2.45 11.52 8 ER2a ExonRegion 0 1.27 0.00 0.11 0.00 0.00 0.02 1.61 0.04 0.06 1.08 1.28 8.71 0.00 0.02 1.38 0.00 2.02 1.64 0.00 3.99 1.35 0.03 0.00 9 E2_Da NovelBoundary 0 11.34 5.99 0.00 3.70 0.00 0.00 4.02 0.00 0.00 3.84 0.00 6.30 0.00 0.00 0.00 0.00 0.00 2.03 0.00 0.00 0.00 0.00 0.00 10 E2a_E3a KnownJunction 0 0.00 0.00 1.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 I2 Intron 0 22.38 5.49 12.71 10.16 22.01 17.31 16.02 17.93 23.79 10.56 5.38 10.26 11.84 11.43 13.15 7.89 9.63 12.63 13.31 13.15 41.02 61.83 64.16 12 I2_AR1 ActiveIntronRegion 0 23.36 5.73 13.27 10.61 22.97 18.07 16.72 18.72 24.82 11.02 5.62 10.71 12.35 11.93 13.73 8.23 10.05 13.18 13.89 13.72 42.81 64.53 66.95 13 E3_Aa NovelBoundary 0 18.00 9.08 23.89 12.42 14.26 7.33 16.16 21.77 30.35 10.31 6.84 14.25 0.00 11.83 5.07 3.67 3.46 10.78 3.67 20.07 41.51 28.66 36.36 14 ER3a ExonRegion 0 9.74 4.46 5.84 7.80 15.19 19.42 7.25 9.87 15.13 8.67 6.42 6.61 2.32 10.44 7.86 13.04 3.62 9.18 12.36 9.31 19.50 32.40 41.87 15 E3_Da NovelBoundary 0 27.86 2.89 44.23 26.94 15.62 23.23 21.29 38.08 37.99 30.03 10.00 12.15 12.99 7.77 24.85 16.75 7.39 18.57 31.81 38.99 82.47 106.24 155.96 16 E3a_E4a KnownJunction 0 3.56 0.00 0.00 0.00 4.16 2.73 2.16 0.00 3.04 0.00 0.00 0.00 6.82 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 I3 Intron 0 11.78 3.77 16.93 9.42 15.71 13.04 10.64 19.90 26.17 14.79 7.17 1.10 3.58 14.23 17.57 10.11 9.18 13.34 15.75 21.70 51.07 64.40 88.95 18 I3_AR1 ActiveIntronRegion 0 11.92 3.81 17.10 9.53 15.91 13.20 10.77 20.13 26.48 14.97 7.25 1.12 3.63 14.41 17.78 10.23 9.30 13.49 15.91 21.93 51.67 65.19 89.99 19 E4_Aa NovelBoundary 0 3.41 6.71 24.19 9.79 8.15 8.46 12.14 19.96 29.89 28.98 7.74 0.00 6.82 11.48 0.00 0.00 11.50 26.61 9.32 12.46 38.92 25.11 46.86 20 ER4a ExonRegion 0 1.57 2.27 8.70 2.83 7.19 6.47 6.27 5.02 11.87 6.08 4.26 0.07 3.13 4.96 3.77 5.80 3.43 6.13 4.37 4.76 18.89 16.04 18.00 21 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 ER5a ExonRegion 0 0.00 0.00 0.00 0.00 1.77 0.00 4.35 0.00 1.75 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.60 0.00 0.00 0.00 0.00 1.38 0.00 23 E5a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24 I5 Intron 0 1.23 1.66 8.08 6.39 2.49 8.54 6.47 9.90 18.86 10.75 2.93 3.74 1.35 9.62 8.70 7.27 6.53 15.82 14.09 14.37 38.99 41.00 52.32 25 I5_AR1 ActiveIntronRegion 0 2.30 2.87 9.21 7.01 3.86 14.75 9.82 10.60 23.22 11.53 3.24 4.62 1.68 11.94 10.14 8.82 6.81 18.70 15.03 16.76 46.01 47.36 60.73 26 I5_AR2 ActiveIntronRegion 0 0.00 2.03 12.25 11.87 2.68 4.42 6.07 15.45 27.03 16.26 1.48 9.68 0.00 6.02 6.49 2.80 9.32 16.63 10.12 15.27 49.91 40.32 30.58 27 I5_AR3 ActiveIntronRegion 0 0.00 0.00 9.72 6.47 0.00 0.00 1.02 9.16 14.92 12.42 4.35 1.88 0.00 8.61 7.49 5.05 7.76 13.64 1.65 8.55 36.69 25.42 28.44 28 I5_AR4 ActiveIntronRegion 0 0.00 0.00 4.12 3.85 1.18 1.62 3.03 7.98 10.62 7.07 1.93 1.61 1.74 6.30 6.88 6.68 4.47 11.10 20.58 12.78 24.12 37.52 54.44 29 ER6a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.02 0.00 0.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 31 ER7a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00