Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TDRKH Gene 0 18.61 33.90 36.11 37.11 35.21 45.62 34.06 30.92 29.27 45.13 1.21 9.26 6.71 5.10 1.28 13.80 26.48 102.30 54.60 46.04 4.82 4.08 4.70 2 368822 Transcript 0 3.83 3.01 6.70 10.89 9.48 8.43 1.89 7.46 6.95 10.69 0.00 2.10 4.76 0.11 2.10 3.01 4.42 11.74 15.63 4.11 0.12 0.00 2.87 3 458431 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 440583 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 368824 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 368827 Transcript 0 9.79 5.65 8.69 16.55 11.67 6.11 13.01 13.10 7.54 14.38 0.00 2.34 0.82 0.55 0.38 1.84 2.85 14.75 17.38 8.66 0.14 0.39 1.09 7 494725 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 368823 Transcript 0 0.00 2.43 1.30 1.47 3.14 2.90 0.00 2.55 1.79 2.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.34 0.00 11.19 2.84 0.00 0.00 9 463553 Transcript 0 0.91 2.29 0.12 1.97 1.15 0.79 4.15 0.00 1.97 3.25 0.00 0.00 0.00 0.00 0.00 0.00 2.91 4.52 4.98 2.31 0.00 0.00 0.00 10 368825 Transcript 0 0.00 1.36 1.84 1.03 0.00 0.00 0.44 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.59 0.00 0.00 0.00 0.00 11 486986 Transcript 0 4.11 2.49 1.53 4.30 2.59 5.29 3.62 3.71 2.36 1.97 0.00 0.00 0.00 0.00 0.00 0.73 0.81 8.62 0.78 4.05 0.00 0.00 0.72 12 484421 Transcript 0 3.42 7.47 3.28 4.81 6.69 15.40 5.84 3.01 2.04 6.51 0.00 1.96 0.00 0.00 0.00 1.66 0.00 5.67 5.02 4.07 0.00 0.00 0.42 13 ER1a ExonRegion 0 4.45 2.90 7.98 3.58 9.67 9.85 3.56 2.16 2.47 1.15 0.00 0.60 0.65 0.32 0.00 0.75 0.28 9.95 11.51 4.29 0.37 0.00 0.49 14 E1_Da NovelBoundary 0 5.85 0.00 2.72 1.86 30.90 65.42 34.05 1.81 2.92 2.61 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.01 0.00 0.00 0.00 0.00 0.00 15 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.42 0.31 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.86 0.00 0.00 17 ER2b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 3.34 2.34 0.31 0.00 0.00 0.23 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 0.00 0.00 18 E2_Ad KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 5.68 2.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.27 0.00 0.00 4.61 0.00 0.00 0.00 0.00 19 E2_Ae KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 E2_Af KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 21 ER2c ExonRegion 0 0.12 3.83 1.66 0.08 0.00 9.49 3.27 3.56 0.00 1.01 1.93 0.00 0.00 0.00 0.00 0.00 3.88 0.33 0.75 0.50 3.50 2.21 0.00 22 E2_Ag KnownBoundary 1 19.26 29.27 11.62 11.55 18.17 53.49 53.66 10.35 3.44 8.41 0.00 0.00 6.01 0.00 0.00 7.18 39.36 60.02 31.44 22.50 7.97 8.45 0.00 23 ER2d ExonRegion 0 6.61 14.74 4.14 4.77 5.02 31.63 18.87 5.62 0.62 2.15 1.93 0.00 2.35 0.00 0.00 2.97 18.98 5.54 7.96 9.04 4.41 4.17 0.00 24 ER2e ExonRegion 1 14.82 24.40 12.25 6.81 10.70 51.35 37.07 6.91 2.47 5.73 1.93 0.00 4.69 0.00 0.00 5.94 39.61 24.02 22.30 14.89 6.61 6.25 0.00 25 ER2f ExonRegion 0 19.65 29.34 12.25 7.20 14.53 59.47 44.64 7.65 7.94 9.34 1.93 0.00 4.69 0.00 0.00 10.61 44.33 29.56 34.58 17.33 6.61 6.25 0.00 26 ER2g ExonRegion 0 28.24 23.67 16.72 13.34 19.09 61.06 41.97 14.70 20.02 25.27 0.46 0.00 2.31 0.99 0.00 10.60 41.93 50.94 38.56 24.74 5.56 2.95 2.24 27 E2_Da NovelBoundary 0 6.22 8.22 7.86 7.89 3.23 17.38 5.92 10.35 12.36 15.69 0.00 0.00 0.00 0.00 0.00 0.00 7.48 16.21 0.00 12.85 0.00 0.00 0.00 28 E2a_E3a KnownJunction 0 0.00 0.00 2.42 3.96 3.82 12.83 4.33 1.60 1.79 3.63 0.00 0.00 0.00 0.00 0.00 7.69 8.42 23.63 13.84 0.00 0.00 0.00 0.00 29 E2b_E3a KnownJunction 0 0.00 2.43 1.30 1.47 3.14 2.90 0.00 2.55 1.79 2.69 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.34 0.00 11.19 2.84 0.00 0.00 30 E2c_E3a KnownJunction 0 0.00 0.00 6.39 6.33 0.00 0.00 7.73 1.77 16.44 19.21 2.21 0.00 13.64 0.00 0.00 0.00 4.77 49.70 13.55 8.88 0.00 0.00 0.00 31 ER2h ExonRegion 0 4.59 6.10 8.78 8.63 2.68 18.34 9.27 10.37 18.94 25.61 0.00 0.00 4.69 0.27 0.00 2.97 14.30 24.33 6.90 21.63 2.20 0.00 0.00 32 ER2i ExonRegion 0 1.67 2.03 8.51 6.31 1.13 9.07 7.80 5.91 13.00 18.47 1.12 0.00 10.37 0.00 0.00 0.63 4.34 31.31 9.56 10.75 0.00 0.00 0.00 33 ER3a ExonRegion 1 4.29 11.54 22.90 21.15 6.41 18.23 9.54 19.23 27.30 46.45 1.38 2.41 18.60 4.44 0.48 10.81 46.43 84.24 41.89 54.74 6.23 4.19 1.52 34 E3_Da KnownBoundary 0 0.00 3.29 1.27 5.69 0.00 0.00 2.25 0.00 2.89 3.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.45 7.53 3.26 0.00 0.00 0.00 35 E3a_E4a KnownJunction 0 0.00 20.26 30.51 37.16 11.46 46.51 18.50 32.86 37.04 68.55 2.53 0.00 20.13 4.71 6.30 46.40 38.24 315.92 48.00 71.46 11.49 0.00 4.35 36 ER3b ExonRegion 0 0.91 2.29 0.12 1.97 1.15 0.79 4.15 0.00 1.97 3.25 0.00 0.00 0.00 0.00 0.00 0.00 2.91 4.52 4.98 2.31 0.00 0.00 0.00 37 ER4a ExonRegion 0 9.85 23.47 38.35 32.42 34.41 110.46 52.20 32.21 31.14 54.23 1.54 5.46 20.29 6.42 0.70 15.89 28.38 190.21 56.38 56.13 6.90 5.90 7.00 38 E4a_E5a KnownJunction 0 16.82 41.90 27.41 44.02 49.41 145.94 122.60 31.59 39.61 54.64 0.00 0.00 33.28 2.47 0.00 22.47 54.98 127.22 55.53 61.68 17.79 0.00 7.51 39 E4a_E5b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.58 0.00 0.00 0.00 0.00 0.00 40 E5_Ab NovelBoundary 0 6.15 35.39 10.26 37.82 18.08 77.97 66.55 20.09 25.69 40.00 0.00 0.00 0.00 2.41 0.00 18.88 22.35 92.11 31.15 50.05 7.29 0.00 6.91 41 ER5a ExonRegion 0 10.09 48.34 23.19 45.39 43.64 123.43 96.95 29.65 39.71 58.58 0.00 0.67 29.58 4.62 0.00 19.89 50.28 129.06 49.01 60.56 13.73 0.80 11.07 42 ER5b ExonRegion 0 18.80 74.58 39.43 55.74 46.36 62.28 48.66 35.69 42.99 66.86 1.28 16.98 15.35 8.14 3.43 25.78 44.50 160.54 52.17 69.49 8.59 4.95 6.41 43 E5_Da KnownBoundary 0 32.75 75.05 61.06 53.24 31.49 24.82 60.06 42.18 30.21 69.98 0.00 37.21 21.59 12.18 5.19 32.81 34.78 146.50 70.97 64.43 2.78 8.14 10.67 44 E5a_E6a KnownJunction 0 0.00 6.64 2.96 3.80 3.14 22.49 6.18 1.93 1.79 3.33 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45 E5a_E6b KnownJunction 0 0.00 0.00 0.00 2.06 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 46 E5a_E8a NovelJunction 0 0.00 4.93 5.62 6.33 3.23 8.63 0.00 10.93 3.30 10.21 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20.85 10.73 4.86 0.00 0.00 0.00 47 ER5c ExonRegion 0 25.59 46.51 38.78 40.53 27.61 47.81 42.53 33.03 33.13 66.41 0.66 23.86 5.77 8.75 0.32 18.52 43.21 152.53 60.04 67.32 7.18 7.88 8.05 48 E5_Db KnownBoundary 0 2.89 0.00 5.14 8.29 12.82 0.00 5.21 8.38 1.39 4.11 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22.88 0.00 2.49 0.00 0.00 0.00 49 E5b_E6a KnownJunction 0 12.74 32.63 38.05 42.39 43.29 45.88 54.89 30.03 33.16 56.49 2.53 12.60 6.82 4.41 0.00 12.13 38.80 128.38 38.21 45.96 2.35 0.00 18.18 50 ER5d ExonRegion 0 4.11 2.49 1.53 4.30 2.59 5.29 3.62 3.71 2.36 1.97 0.00 0.00 0.00 0.00 0.00 0.73 0.81 8.62 0.78 4.05 0.00 0.00 0.72 51 E6_Aa NovelBoundary 0 14.08 0.00 1.83 2.76 8.15 5.22 2.08 1.73 0.00 1.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.84 0.00 6.20 0.00 0.00 0.00 52 ER6a ExonRegion 0 18.23 37.06 37.17 49.90 45.93 53.54 44.87 34.86 39.56 60.21 2.31 8.30 16.68 6.09 1.37 14.70 45.57 141.25 69.81 49.94 4.53 2.37 11.66 53 E6_Ab KnownBoundary 0 57.12 64.26 40.63 60.23 74.96 84.16 69.29 48.67 44.30 57.78 5.37 0.00 26.78 2.47 5.81 21.96 51.05 165.94 130.92 74.53 8.28 5.39 16.30 54 ER6b ExonRegion 0 29.00 46.71 38.22 44.16 78.63 78.52 61.30 41.98 45.16 88.52 1.77 23.60 23.09 11.23 2.96 26.83 54.34 150.34 83.65 79.64 9.41 6.73 14.17 55 E6a_E7a KnownJunction 0 35.93 69.13 31.02 46.75 84.04 91.88 70.57 33.80 44.99 86.58 6.74 18.01 26.30 7.24 0.00 11.71 36.65 133.81 99.86 89.29 11.49 5.69 11.35 56 ER7a ExonRegion 0 19.27 59.78 40.37 41.82 46.45 65.92 55.39 40.56 42.47 69.40 2.19 20.81 9.81 8.69 2.12 20.31 47.87 141.63 62.76 70.57 8.14 5.81 11.85 57 E7_Da KnownBoundary 0 26.82 62.55 44.32 38.62 71.82 82.23 61.03 30.31 29.75 52.46 0.00 56.57 0.00 12.54 4.45 20.59 55.45 140.15 65.60 84.69 3.15 8.02 12.38 58 ER7b ExonRegion 0 21.75 41.38 37.28 48.95 52.51 73.75 60.60 47.47 36.39 58.79 0.00 21.02 13.66 13.39 2.56 23.69 35.64 232.41 84.57 75.79 9.90 9.09 8.30 59 E7_Db KnownBoundary 0 10.59 13.22 4.97 12.29 28.95 13.40 20.89 11.42 3.56 19.88 0.00 0.00 0.00 2.35 0.00 3.50 0.00 23.55 18.26 7.54 0.00 0.00 3.93 60 E7b_E8a KnownJunction 0 21.11 59.92 44.35 50.01 29.29 95.06 57.28 52.12 37.85 50.31 0.00 18.91 0.00 2.47 0.00 19.82 30.11 224.01 96.94 98.62 10.81 11.57 7.26 61 ER7c ExonRegion 0 6.84 8.29 3.61 5.82 10.24 8.32 5.50 4.09 2.28 9.68 0.00 3.91 0.00 0.00 0.00 3.32 0.00 11.34 10.05 8.14 0.00 0.00 0.85 62 E7_Dc NovelBoundary 0 2.74 6.38 7.54 18.48 25.64 2.90 24.60 4.19 8.16 11.98 0.00 0.00 0.00 0.00 0.00 7.86 0.00 14.55 7.72 8.56 0.00 0.00 0.00 63 E8_Aa NovelBoundary 0 3.78 6.51 3.22 6.93 0.00 13.57 0.00 6.24 7.61 18.05 0.00 0.00 8.28 0.00 0.00 0.00 0.00 27.69 4.61 9.01 0.00 0.00 0.00 64 ER8a ExonRegion 0 28.38 46.37 60.46 49.29 45.49 74.88 49.18 45.77 50.23 71.87 1.97 17.72 10.57 8.55 1.30 24.15 51.63 219.87 93.84 81.50 8.99 7.47 7.06 65 E8a_E9a KnownJunction 0 44.90 52.89 69.36 73.72 57.89 94.38 34.09 45.02 52.89 90.79 4.63 12.30 33.44 4.59 0.00 8.54 46.84 278.69 125.37 82.84 5.50 12.92 7.43 66 ER9a ExonRegion 0 23.83 44.29 61.65 55.14 50.24 73.24 56.16 40.65 48.11 87.20 1.39 10.61 10.08 9.79 3.02 33.57 48.98 222.45 95.45 77.70 7.86 6.49 8.61 67 E9a_E10a KnownJunction 0 32.67 67.55 59.19 63.16 56.45 90.29 52.11 33.68 49.36 90.98 2.58 18.61 13.47 7.24 10.51 49.30 47.41 160.18 119.16 48.96 8.28 0.00 4.35 68 ER10a ExonRegion 0 25.01 53.69 57.08 43.51 54.79 112.23 52.49 45.29 44.77 71.58 1.28 17.45 14.14 11.87 2.90 28.08 53.47 179.40 102.62 76.63 4.71 3.78 5.56 69 E10a_E11a KnownJunction 0 28.30 78.28 62.18 49.51 45.67 89.44 61.25 53.64 49.48 53.46 2.68 29.71 12.99 9.83 0.00 20.34 44.88 147.66 121.23 87.50 14.02 15.31 3.24 70 ER11a ExonRegion 0 25.69 52.24 72.22 67.30 81.70 90.92 54.83 68.50 43.66 75.38 1.96 9.06 11.45 11.55 2.37 34.81 45.84 203.86 93.65 84.49 8.95 6.66 3.55 71 E11a_E12a KnownJunction 0 33.27 58.94 88.73 93.83 142.95 114.93 100.07 86.58 40.34 99.47 4.69 0.00 6.82 28.78 5.69 21.45 59.09 231.64 180.62 110.45 10.01 12.74 7.34 72 ER12a ExonRegion 0 42.70 66.67 82.95 96.70 67.31 118.15 66.55 75.31 54.10 95.58 3.83 12.31 14.16 10.88 3.38 18.74 44.21 229.61 151.99 110.16 18.30 12.26 6.42 73 E12a_E13a KnownJunction 0 51.05 84.26 97.99 98.62 56.96 124.36 74.06 52.33 52.40 92.86 2.68 12.00 13.31 7.77 8.90 39.14 40.49 256.51 144.76 76.57 10.63 3.12 12.55 74 ER13a ExonRegion 0 49.71 73.84 84.11 94.64 66.09 112.94 69.51 70.97 52.45 90.59 3.47 24.28 14.12 9.07 5.77 31.80 41.96 257.71 153.72 89.71 14.90 7.15 6.75 75 E13a_E14a KnownJunction 0 49.19 72.55 75.25 116.34 74.19 129.70 69.73 70.48 65.45 82.52 4.47 0.00 13.31 2.24 0.00 14.27 33.75 202.29 144.76 128.92 6.12 8.63 8.54 76 ER14a ExonRegion 0 39.98 68.92 72.54 87.33 68.70 98.87 55.79 61.25 61.61 84.24 1.79 20.61 8.82 6.39 3.15 26.36 50.77 185.56 142.75 94.08 10.80 10.24 13.12 77 E14_Da KnownBoundary 0 17.78 71.57 59.70 25.77 82.17 46.90 39.30 23.70 28.15 42.04 2.58 6.30 6.82 5.24 0.00 11.88 17.67 162.29 76.14 40.84 2.66 0.00 7.51 78 E14a_E14b KnownJunction 0 7.04 6.12 12.12 29.10 18.76 15.45 2.12 20.21 18.37 30.92 0.00 5.70 13.64 0.00 6.30 8.29 13.00 25.29 35.39 8.05 0.00 0.00 8.11 79 E14a_E15a KnownJunction 0 3.56 0.00 1.09 6.46 4.07 0.00 10.95 1.77 1.79 7.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.82 13.55 0.00 0.00 0.00 0.00 80 ER14b ExonRegion 0 23.46 49.65 67.72 37.03 58.98 45.95 41.86 29.33 38.32 47.92 1.30 15.41 4.87 6.41 0.62 11.65 26.71 157.20 71.14 64.63 4.67 4.59 6.28 81 E14_Ab KnownBoundary 0 31.78 52.69 100.56 55.80 61.71 39.64 59.22 48.26 50.43 58.48 0.00 25.21 0.00 0.00 0.00 12.30 35.72 130.16 60.99 77.79 3.15 5.51 8.19 82 ER14c ExonRegion 0 25.60 52.29 48.56 56.05 45.62 42.72 44.41 43.62 42.52 57.21 2.15 9.58 3.74 5.61 1.39 15.62 27.20 85.57 62.81 49.63 3.75 5.50 4.48 83 E14_Db NovelBoundary 0 3.04 13.09 12.86 17.15 3.99 6.98 5.43 14.75 6.37 6.45 0.00 6.30 0.00 0.00 0.00 4.36 3.83 3.90 3.86 5.75 0.00 5.88 0.00 84 ER14d ExonRegion 0 2.12 19.32 7.35 5.45 5.35 2.75 5.30 5.19 1.85 4.59 0.00 8.66 0.00 0.00 0.00 0.00 3.30 1.85 3.19 2.13 0.00 0.00 0.00 85 ER14e ExonRegion 0 2.12 10.42 5.21 3.58 3.01 1.83 4.14 4.54 0.46 2.15 0.00 4.33 0.00 0.00 0.00 0.00 0.41 1.15 3.19 1.60 0.00 0.00 0.00 86 ER14f ExonRegion 0 0.00 5.08 3.68 1.36 1.34 0.00 1.99 1.73 0.00 1.15 0.00 4.33 0.00 0.00 0.00 0.00 0.00 0.00 3.19 0.00 0.00 0.00 0.00 87 ER14g ExonRegion 0 0.00 2.71 3.68 0.00 0.00 0.00 0.88 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.19 0.00 0.00 0.00 0.00 88 I14 Intron 0 8.72 7.92 7.11 10.95 7.01 8.79 8.92 8.87 5.65 9.99 0.00 0.53 0.87 0.76 0.00 2.23 2.22 13.09 15.74 12.75 0.50 1.72 0.66 89 I14_SR1 SilentIntronRegion 0 8.13 8.36 6.85 11.43 8.36 9.83 10.05 8.28 5.26 9.16 0.00 0.64 1.03 0.68 0.00 2.39 2.65 12.33 17.07 13.30 0.59 2.05 0.53 90 I14_AR1 ActiveIntronRegion 0 11.99 5.76 8.62 8.63 0.00 3.46 3.13 12.16 7.82 14.52 0.00 0.00 0.00 1.17 0.00 1.40 0.00 17.35 9.03 10.05 0.00 0.00 1.39 91 E15_Aa NovelBoundary 0 15.48 27.82 23.42 21.58 0.00 15.96 25.70 30.93 30.32 22.83 0.00 6.30 0.00 0.00 0.00 11.96 9.16 61.77 0.00 8.44 3.03 2.27 4.18 92 ER15a ExonRegion 0 16.03 11.30 16.28 26.64 19.27 12.23 15.07 24.43 13.29 21.18 0.00 4.69 1.64 1.11 0.76 3.67 5.71 27.67 21.21 17.33 0.27 0.77 2.18 93 IG29 Intergenic 0 8.11 5.61 15.50 13.32 6.30 3.50 4.77 17.99 7.42 17.36 0.00 4.31 0.82 0.57 0.00 2.52 6.99 30.91 14.83 14.88 0.00 0.88 0.00 94 IG29_AR1 ActiveIntergenicRegion 0 8.18 5.65 15.62 13.43 6.35 3.53 4.81 18.14 7.48 17.50 0.00 4.35 0.82 0.58 0.00 2.54 7.04 31.16 14.95 14.98 0.00 0.89 0.00