Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SSR2 Gene 0 187.84 276.63 190.44 229.18 129.40 192.49 104.53 89.48 60.78 169.17 128.11 67.92 89.75 113.96 214.31 116.93 109.93 119.56 126.11 84.91 171.51 161.71 119.86 2 295702 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 3 368312 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 368311 Transcript 1 24.10 15.27 13.64 17.41 25.56 30.39 20.78 24.15 17.71 38.97 12.78 22.82 35.25 16.43 25.39 16.52 14.35 16.04 13.56 17.73 13.87 22.18 16.60 5 473699 Transcript 0 1.17 1.69 4.71 0.97 3.35 1.35 2.28 1.25 3.09 1.11 1.11 0.02 0.80 0.30 1.39 1.11 2.97 0.20 1.17 3.17 0.85 1.35 0.55 6 480176 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 496742 Transcript 0 0.00 0.00 6.06 6.23 0.00 0.00 0.00 3.29 1.79 5.45 0.00 0.00 0.00 4.77 4.94 0.00 12.72 8.66 9.32 5.11 5.75 9.37 8.19 8 466905 Transcript 0 17.86 64.13 7.30 37.19 16.64 5.45 25.66 28.83 13.51 36.40 4.42 7.20 0.00 2.30 17.80 11.36 4.77 10.03 18.82 12.14 14.89 3.12 3.50 9 472898 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 10 474377 Transcript 0 0.00 0.00 1.24 7.59 0.00 0.00 1.68 1.64 2.58 3.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 484320 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12 480567 Transcript 0 12.36 5.53 4.05 2.34 2.95 2.93 2.66 1.81 2.95 7.83 3.06 2.85 2.84 5.20 5.12 0.59 2.34 3.30 4.67 1.83 3.78 5.84 4.30 13 467041 Transcript 0 1.12 0.35 6.23 2.26 0.24 1.13 0.61 0.65 4.27 8.20 1.18 0.00 2.55 1.01 7.34 0.94 3.90 1.86 2.68 1.98 2.53 2.53 1.74 14 488179 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 15 472467 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 16 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 1.03 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.96 0.00 0.00 17 E1_Ae KnownBoundary 0 0.00 0.00 1.54 1.40 0.00 7.84 2.25 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.15 0.00 0.00 18 E1_Af KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 E1_Ag KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 E1_Ah KnownBoundary 0 340.50 516.75 68.98 129.69 165.45 551.73 174.97 14.13 13.05 60.82 67.70 22.51 12.34 130.85 111.13 132.87 98.83 53.35 187.02 54.46 152.84 101.71 107.30 21 ER1b ExonRegion 0 0.00 1.81 0.00 0.00 0.59 5.50 1.62 0.00 0.96 0.64 0.00 0.00 0.00 0.90 1.61 1.65 5.13 0.82 0.00 0.00 2.20 0.00 4.57 22 ER1c ExonRegion 0 10.05 8.64 4.29 8.18 4.68 31.17 4.63 0.00 1.85 3.73 0.00 0.00 0.00 6.90 8.70 11.15 18.98 3.23 0.00 5.32 9.92 1.56 18.35 23 ER1d ExonRegion 0 113.52 169.16 32.86 61.33 55.70 191.72 54.28 8.17 5.73 28.57 23.37 4.72 0.00 57.43 122.38 61.06 54.61 18.48 57.92 25.14 66.51 34.66 58.73 24 ER1e ExonRegion 1 232.82 376.21 62.49 122.66 120.41 434.61 127.76 15.56 9.88 57.35 57.02 25.98 0.00 119.37 248.06 112.94 92.43 35.11 140.16 39.36 124.51 85.42 99.85 25 ER1f ExonRegion 1 233.88 378.25 63.72 123.34 128.44 442.86 129.75 15.56 9.88 57.92 57.99 25.98 0.00 125.87 249.51 112.94 92.43 35.11 141.75 40.43 126.71 86.47 101.31 26 ER1g ExonRegion 1 234.93 382.31 66.58 124.48 136.46 451.73 131.95 17.28 9.88 58.49 61.85 28.86 0.00 128.31 257.24 112.94 94.63 35.72 147.59 41.13 127.82 89.59 108.66 27 ER1h ExonRegion 1 498.29 760.41 187.04 282.12 350.52 959.99 352.74 54.94 37.58 137.87 168.58 49.79 13.74 282.02 572.79 225.03 202.06 83.81 283.50 115.65 348.34 174.72 229.06 28 E1a_E2a KnownJunction 1 6326.60 6583.17 1816.02 2531.11 4620.38 8264.27 3887.16 619.15 481.13 1358.92 2506.69 119.89 291.86 1940.15 5749.20 2173.79 2422.06 1772.80 2861.64 1752.99 3930.83 2897.45 2784.46 29 E1a_E4a NovelJunction 0 20.45 12.56 5.00 1.83 0.00 8.69 6.76 4.85 3.99 1.05 5.37 5.70 0.00 12.01 4.45 0.00 9.16 3.27 0.00 0.00 0.00 0.00 0.00 30 ER1i ExonRegion 1 1857.24 2551.12 822.84 1036.47 1396.74 3371.44 1314.69 240.26 178.47 520.69 761.56 60.61 51.59 891.64 2039.58 780.18 792.22 348.30 834.57 528.72 1409.27 744.86 878.06 31 ER1j ExonRegion 1 2998.28 3740.28 1154.46 1560.62 2360.01 4914.66 2159.38 394.46 308.99 876.98 1464.89 62.87 97.88 1340.60 3314.24 1230.33 1483.68 711.95 1571.22 984.73 2450.05 1687.47 1413.04 32 ER1k ExonRegion 1 3911.32 4250.18 1480.25 1989.81 3138.65 6009.36 2817.39 582.49 436.00 1278.80 2075.93 56.28 159.46 1570.52 4383.79 1450.40 2066.36 1092.02 1872.99 1480.85 3365.06 2375.21 1800.16 33 ER1l ExonRegion 0 21.31 0.00 0.00 0.79 2.24 3.58 3.63 0.00 1.52 6.85 3.87 0.00 0.00 8.05 5.53 1.18 0.00 4.86 9.33 3.66 4.41 5.86 8.61 34 E1_Al KnownBoundary 0 59.71 2.96 0.00 1.83 3.99 7.15 8.88 0.00 6.05 14.96 12.58 0.00 0.00 19.60 18.54 8.37 0.00 15.13 18.64 8.50 10.81 13.66 16.30 35 ER1m ExonRegion 0 12.20 3.69 3.52 2.48 2.79 4.94 2.04 1.92 2.53 6.91 2.21 0.26 3.62 2.52 6.47 1.33 2.07 2.41 2.13 2.34 5.88 3.46 3.36 36 E1_Db KnownBoundary 0 0.00 0.00 1.42 0.00 0.00 0.00 1.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.27 0.00 0.00 0.00 0.00 3.09 0.00 0.00 37 E1b_E2a KnownJunction 0 3.41 11.05 8.10 3.90 3.65 2.27 1.68 3.61 4.37 8.81 2.26 5.70 5.68 2.35 4.70 0.00 4.68 1.74 0.00 0.00 3.15 5.82 0.00 38 ER1n ExonRegion 0 2.24 0.70 5.13 3.15 0.48 2.25 1.22 1.31 5.01 12.06 2.35 0.00 5.11 2.02 10.24 1.88 3.04 3.73 5.35 3.95 5.06 2.25 3.48 39 E1c_E2a KnownJunction 0 0.00 0.00 7.33 1.37 0.00 0.00 0.00 0.00 3.53 4.35 0.00 0.00 0.00 0.00 4.45 0.00 4.77 0.00 0.00 0.00 0.00 2.82 0.00 40 ER2a ExonRegion 1 1304.12 1108.65 1417.22 1558.37 864.09 1369.67 671.64 529.51 401.55 1206.00 1563.98 321.13 358.32 572.67 1336.09 697.47 1321.72 814.19 885.02 738.43 2135.68 1005.56 789.63 41 E2a_E3a KnownJunction 0 0.00 0.00 6.36 0.00 0.00 0.00 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.26 0.00 0.00 0.00 42 E2a_E4a KnownJunction 1 257.30 606.14 2693.46 3078.93 140.66 210.16 102.19 972.76 696.03 2194.62 3402.76 620.00 523.67 1655.67 2751.60 1295.73 2723.33 1128.11 2764.13 1745.51 3766.38 2244.51 1414.04 43 E2a_E5d KnownJunction 0 0.00 0.00 6.06 6.23 0.00 0.00 0.00 3.29 1.79 5.45 0.00 0.00 0.00 4.77 4.94 0.00 12.72 8.66 9.32 5.11 5.75 9.37 8.19 44 ER3a ExonRegion 0 3.52 5.07 4.50 2.90 6.50 4.05 6.85 1.21 5.68 3.34 3.33 0.05 2.40 0.90 4.18 3.33 4.15 0.60 3.52 6.24 2.55 4.05 1.65 45 E3a_E4a KnownJunction 0 0.00 0.00 3.28 0.00 3.57 0.00 0.00 2.55 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.77 0.00 0.00 0.00 0.00 0.00 0.00 46 ER4a ExonRegion 0 803.83 1253.12 2149.00 2412.31 759.64 744.97 307.32 760.00 519.07 1530.13 1372.07 589.38 596.11 1443.43 2944.27 1743.83 1080.26 1903.56 1842.27 1055.42 1671.46 1997.76 2017.30 47 E4_Da KnownBoundary 0 9.41 73.80 54.43 60.47 60.53 43.27 10.60 15.07 6.97 35.11 19.85 12.45 19.64 24.02 31.77 23.84 29.27 56.79 16.66 38.29 28.29 9.12 22.11 48 E4a_E5a KnownJunction 0 428.96 1315.95 1949.37 1950.67 2242.79 2273.69 612.71 614.55 421.41 1282.36 1052.90 565.38 572.20 609.46 1330.74 996.75 884.71 1576.76 841.62 569.18 1438.67 1009.07 866.52 49 ER4b ExonRegion 0 16.20 138.46 69.97 64.42 36.20 55.40 54.89 20.13 12.82 53.35 25.07 13.24 25.01 25.12 47.37 25.28 30.43 26.02 33.45 35.71 20.30 24.67 15.73 50 E4b_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 51 E4b_E5d KnownJunction 0 17.78 233.77 94.88 78.94 0.00 16.13 18.55 19.02 7.15 44.56 30.11 7.50 31.82 32.90 74.91 15.04 29.55 45.56 20.52 30.36 11.31 29.51 3.59 52 I4_SR3 SilentIntronRegion 0 15.28 4.38 6.60 9.51 4.36 5.52 7.35 6.14 3.52 10.19 7.88 14.21 6.67 7.12 7.44 5.83 12.10 6.25 9.39 10.58 9.58 2.72 11.71 53 ER5a ExonRegion 0 697.09 3150.59 1917.03 2166.71 2022.89 3576.24 1665.65 629.60 419.92 1396.69 1207.26 673.41 883.23 1055.86 1965.75 970.93 916.32 1181.24 1029.22 613.02 1659.66 1396.42 878.46 54 E5_Da KnownBoundary 1 3.48 25.32 21.55 20.11 11.63 15.84 26.90 22.67 16.70 61.86 19.95 43.21 13.15 16.78 17.80 24.01 4.77 17.00 3.67 29.21 25.95 5.33 19.63 55 E5a_E5c KnownJunction 0 20.89 89.46 18.54 51.74 20.37 28.56 11.61 25.67 13.11 34.14 2.68 0.00 0.00 0.00 8.90 0.00 0.00 8.58 4.80 11.25 14.33 5.63 4.35 56 E5a_E5d KnownJunction 0 2197.20 5595.06 2330.23 2457.26 501.87 785.34 584.05 663.35 451.21 1506.77 962.45 803.36 704.17 1149.57 2282.72 1003.67 949.88 891.41 1226.29 702.64 1548.33 1553.92 859.18 57 ER5b ExonRegion 1 33.12 23.94 16.72 25.77 38.07 52.46 32.32 37.38 29.67 63.31 18.99 34.74 57.45 22.26 35.69 24.13 20.87 27.86 22.39 27.02 22.95 37.77 25.98 58 E5_Ab KnownBoundary 1 54.38 30.92 16.35 45.95 29.54 113.40 60.77 57.38 39.79 75.56 22.01 68.87 88.31 27.25 72.69 29.56 30.29 21.72 36.14 21.35 9.39 100.79 33.46 59 ER5c ExonRegion 1 31.77 24.38 14.17 35.79 75.44 56.75 43.73 51.01 36.09 72.94 19.54 55.00 61.52 14.57 26.78 13.19 14.12 6.90 8.89 22.80 7.37 40.78 14.18 60 E5_Ac KnownBoundary 1 86.83 49.93 16.41 56.14 107.56 64.74 30.21 76.48 45.49 95.28 23.01 78.93 87.98 25.55 26.70 16.92 17.11 10.40 12.52 35.60 25.76 36.01 28.17 61 ER5d ExonRegion 1 70.26 81.58 43.46 82.98 103.91 87.99 70.77 97.93 57.45 110.62 25.03 58.40 54.57 19.54 28.42 22.33 13.57 26.52 29.96 37.56 31.85 44.18 23.48 62 E5_Db KnownBoundary 0 43.04 62.82 21.17 32.76 73.60 38.10 58.74 44.77 23.26 55.52 17.06 6.30 13.15 2.47 32.88 23.93 0.00 26.07 20.05 21.28 16.37 23.76 23.73 63 E5b_E5d KnownJunction 0 0.00 0.00 1.24 7.59 0.00 0.00 1.68 1.64 2.58 3.14 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 64 E5_Dc KnownBoundary 0 44.23 50.52 27.14 31.76 87.95 52.47 48.67 37.58 34.43 48.81 5.05 30.46 33.93 10.42 8.90 0.00 3.74 8.95 16.75 15.47 11.18 16.90 4.35 65 E5c_E5d KnownJunction 0 17.86 64.13 7.30 37.19 16.64 5.45 25.66 28.83 13.51 36.40 4.42 7.20 0.00 2.30 17.80 11.36 4.77 10.03 18.82 12.14 14.89 3.12 3.50 66 ER5e ExonRegion 1 63.07 115.91 40.07 77.00 134.32 70.78 85.66 91.61 59.53 114.12 21.46 58.45 45.96 16.73 50.77 28.24 9.90 38.99 37.27 28.72 29.97 35.21 21.14 67 ER5f ExonRegion 0 56.19 59.15 35.89 64.94 85.43 68.82 53.73 68.81 39.79 86.56 22.26 35.03 27.29 21.42 26.92 16.82 15.49 21.52 13.98 29.36 24.31 37.77 21.28 68 E5_Dd KnownBoundary 0 72.98 69.40 43.17 67.49 79.12 101.59 82.14 77.51 27.63 78.62 42.70 19.06 7.63 13.83 22.62 30.25 13.37 29.22 8.94 27.36 7.72 25.17 12.80 69 ER5g ExonRegion 0 93.11 96.73 51.22 73.68 69.49 81.17 44.67 80.34 32.32 81.72 29.58 22.40 23.34 27.19 40.77 25.25 17.25 22.55 22.28 34.28 26.12 40.11 25.78 70 E5_Ad KnownBoundary 0 70.75 78.01 28.00 68.89 75.38 33.16 40.76 84.00 31.65 83.78 22.95 37.81 21.43 19.60 22.25 12.30 17.48 14.18 16.28 32.66 13.96 29.58 8.11 71 ER5h ExonRegion 0 1828.89 3398.93 2254.59 2486.50 551.48 733.35 525.10 816.55 511.82 1632.28 1106.42 644.64 674.09 1200.25 2014.64 932.86 995.33 860.38 1074.05 676.34 1696.28 1612.35 892.55 72 E5_De KnownBoundary 0 3.48 2.76 17.53 4.66 4.33 0.00 8.04 10.93 7.06 14.26 2.37 0.00 21.75 17.31 5.93 15.55 0.00 1.99 0.00 15.40 0.00 0.00 8.37 73 E5e_E6a KnownJunction 0 2368.64 2320.64 2781.89 3317.36 951.36 953.60 619.43 944.29 598.46 1853.58 1197.72 617.90 662.29 1315.74 2054.40 1198.75 1163.81 1215.33 1395.80 680.40 1565.07 1835.66 1048.43 74 ER5i ExonRegion 0 15.53 6.70 6.34 6.68 15.80 5.29 11.47 7.17 7.63 15.00 10.29 5.82 8.46 6.90 10.46 4.82 10.81 2.48 3.88 10.74 1.43 6.34 6.68 75 E5_Df KnownBoundary 0 30.67 3.29 2.84 4.86 3.65 0.00 0.00 17.05 9.26 19.42 2.47 12.60 19.32 4.89 18.54 8.72 8.32 1.58 4.80 11.25 0.00 13.66 4.18 76 ER5j ExonRegion 0 15.08 6.60 10.57 9.05 13.05 8.32 9.24 10.93 5.75 14.62 6.58 10.90 13.05 10.59 15.10 8.91 7.84 4.23 4.72 8.44 4.79 6.60 7.23 77 I5_SR1 SilentIntronRegion 0 39.79 7.54 10.61 4.40 19.92 3.22 12.16 6.06 4.35 7.69 4.10 5.06 3.03 3.47 10.36 7.27 6.45 3.50 4.21 5.63 5.19 7.76 3.66 78 I5_AR1 ActiveIntronRegion 0 56.09 15.25 15.52 5.45 13.38 5.81 12.14 8.64 4.94 10.32 3.87 4.33 0.00 2.71 26.59 5.94 13.20 3.70 3.19 6.38 0.00 6.60 3.43 79 I5_SR2 SilentIntronRegion 0 51.18 14.24 14.70 4.34 7.54 5.17 8.18 6.60 3.37 8.03 4.74 0.79 0.00 1.03 14.51 5.94 7.20 2.02 2.90 5.03 0.00 2.08 5.87 80 ER6a ExonRegion 0 1380.33 1943.11 1056.20 1413.44 381.38 586.32 377.44 404.97 256.22 739.06 436.50 260.18 466.38 632.25 1055.22 649.72 394.33 588.50 659.63 295.57 584.85 863.48 591.59 81 E6_Da KnownBoundary 0 500.09 1069.81 69.57 90.33 261.55 343.44 228.01 39.47 20.60 31.03 67.86 63.77 14.61 9.71 37.33 31.53 61.62 102.89 54.50 23.59 67.58 27.00 44.05 82 E6_Db KnownBoundary 1 446.15 854.12 40.80 78.35 215.03 289.21 240.91 47.52 18.95 58.37 91.97 5.40 20.94 11.42 22.62 23.58 60.40 79.13 25.13 20.58 97.92 17.33 19.80 83 ER6b ExonRegion 0 391.22 951.31 4.07 4.14 93.87 292.09 218.98 0.00 3.46 2.39 0.39 4.33 9.00 0.00 2.32 0.00 0.00 7.76 9.68 0.00 0.44 0.00 0.00 84 ER6c ExonRegion 0 340.01 539.32 0.90 4.11 19.65 69.50 69.44 1.19 0.09 2.66 1.77 0.24 1.62 0.00 0.90 1.38 3.21 2.52 2.92 0.99 4.01 0.57 1.36 85 E6_Dc KnownBoundary 1 1134.28 749.80 89.62 129.99 62.39 39.52 10.11 44.77 17.65 55.79 81.34 40.51 31.98 13.30 45.61 24.10 88.83 42.08 74.07 21.09 70.86 56.89 54.89 86 ER6d ExonRegion 0 287.21 174.15 1.21 3.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.32 0.00 0.24 0.00 3.37 0.98 1.66 0.00 4.61 0.48 0.00 87 E6_Dd KnownBoundary 0 73.94 14.67 28.50 11.22 18.93 7.78 0.00 18.52 4.92 36.77 36.85 5.25 13.47 4.41 28.80 6.92 0.00 15.67 18.92 8.82 17.11 24.37 7.60 88 E6_De KnownBoundary 0 39.93 13.81 114.60 107.81 32.43 18.11 1.99 49.99 21.67 111.13 13.53 0.00 19.64 11.12 4.82 14.10 11.97 39.63 20.24 2.81 13.10 10.90 19.04 89 ER6e ExonRegion 0 41.98 3.56 0.51 3.92 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.03 0.00 0.00 0.00 0.00 0.00 0.00 0.37 0.00 0.00 90 ER6f ExonRegion 0 286.60 14.45 0.00 3.80 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.69 2.78 3.73 0.00 0.00 0.00 2.90 0.00 5.86 0.00 0.00 91 ER6g ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00