Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 TRIM46 Gene 0 8.59 29.37 53.48 33.57 22.08 78.41 20.87 78.07 78.76 88.16 14.91 3.26 5.76 21.44 11.27 17.55 12.56 132.43 75.15 81.41 36.80 10.75 22.86 2 430513 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 392451 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 368385 Transcript 0 4.60 9.91 3.99 4.15 6.20 11.42 10.75 8.04 15.71 8.81 7.01 1.46 5.93 14.98 9.38 14.56 8.82 15.41 20.41 33.88 12.45 4.48 12.75 5 474430 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 368383 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 368382 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.55 0.00 0.69 1.37 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.94 0.00 1.06 0.00 0.00 0.00 8 334634 Transcript 0 0.00 0.00 0.00 1.36 0.00 0.00 0.00 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.37 0.00 0.00 0.00 0.00 9 464760 Transcript 0 6.01 20.69 25.42 9.15 11.47 73.93 27.16 18.21 28.33 31.80 3.16 0.00 0.00 9.24 2.83 8.05 1.78 88.00 93.45 77.22 22.73 3.69 26.21 10 468878 Transcript 0 2.00 0.00 4.95 2.56 1.68 14.43 5.41 8.77 6.34 11.94 0.00 0.00 0.00 0.00 0.00 0.40 0.00 10.07 10.50 11.08 0.10 0.00 0.00 11 368380 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 ER1a ExonRegion 0 0.00 0.00 0.00 0.15 3.57 6.52 3.53 0.00 0.41 0.00 1.50 0.00 0.00 1.80 0.00 2.64 0.00 3.28 2.83 1.65 2.94 0.00 5.87 13 E1_Ad KnownBoundary 0 3.41 8.81 0.00 7.23 11.97 71.95 19.48 6.08 5.93 1.61 14.79 0.00 0.00 9.48 0.00 19.65 4.77 29.80 35.67 24.35 11.86 3.00 19.97 14 ER1b ExonRegion 0 1.06 1.48 0.00 2.48 6.57 29.26 10.83 0.39 1.85 1.09 6.85 0.00 0.00 6.42 0.66 7.30 1.95 10.25 13.61 9.67 7.51 0.95 12.41 15 ER1c ExonRegion 0 2.12 4.07 0.00 4.09 8.03 46.86 11.92 2.11 2.47 1.15 9.66 0.00 0.00 7.40 2.90 8.92 3.30 11.09 25.48 15.60 11.02 2.08 14.68 16 ER1d ExonRegion 0 1.13 6.38 0.06 3.74 5.07 29.37 6.09 4.62 8.07 13.15 5.87 0.00 0.00 4.20 4.70 3.74 2.50 21.41 22.68 31.18 11.93 1.15 11.09 17 E1_Ae KnownBoundary 0 0.00 7.89 0.00 0.00 0.00 12.83 0.00 5.59 14.41 37.23 0.00 0.00 0.00 4.71 0.00 0.00 4.02 44.77 25.98 15.15 4.94 0.00 0.00 18 ER1e ExonRegion 0 0.00 6.26 3.44 2.37 3.88 5.92 0.19 19.46 18.17 23.97 2.49 2.58 0.00 3.88 5.76 6.23 5.64 64.55 52.40 21.48 13.22 4.23 21.60 19 E1a_E5a KnownJunction 0 0.00 2.89 5.88 4.76 11.21 2.21 0.00 30.85 27.78 22.11 9.42 13.95 0.00 2.12 0.00 3.85 4.68 38.10 24.85 23.07 31.57 7.35 7.51 20 E1b_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.39 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.15 0.00 0.00 0.00 0.00 0.00 21 ER1f ExonRegion 0 0.00 0.00 0.00 0.00 0.00 1.10 0.00 1.38 1.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.73 0.00 2.13 0.00 0.00 0.00 22 E2_Aa NovelBoundary 0 0.00 0.00 3.55 0.00 0.00 28.22 3.89 1.64 4.80 0.00 2.11 0.00 0.00 2.30 0.00 0.00 7.48 6.80 8.85 11.89 2.35 0.00 10.76 23 ER2a ExonRegion 0 2.17 10.86 15.36 5.35 3.33 36.05 13.34 10.67 15.63 15.75 2.17 0.00 0.00 4.00 1.20 4.13 0.00 42.72 48.17 39.91 11.29 1.93 16.47 24 E2a_E5a KnownJunction 0 9.85 30.52 35.48 12.95 19.61 111.81 40.98 25.75 41.03 47.84 4.16 0.00 0.00 14.48 4.45 11.96 3.55 133.27 138.73 114.54 34.16 5.45 35.94 25 ER3a ExonRegion 0 2.00 0.00 4.95 2.56 1.68 14.43 5.41 8.77 6.34 11.94 0.00 0.00 0.00 0.00 0.00 0.40 0.00 10.07 10.50 11.08 0.10 0.00 0.00 26 E3_Ab KnownBoundary 0 0.00 3.22 6.30 0.00 0.00 2.56 0.00 6.90 6.80 8.46 0.00 0.00 0.00 0.00 0.00 4.36 0.00 4.23 8.56 5.62 0.00 0.00 0.00 27 ER3b ExonRegion 0 0.00 0.00 2.45 0.05 0.00 0.00 1.30 2.97 2.00 3.14 0.00 0.00 0.00 0.00 0.00 1.63 0.00 1.99 1.62 7.15 1.83 0.00 0.00 28 E3_Da NovelBoundary 0 0.00 0.00 2.54 7.03 0.00 5.79 0.00 17.29 10.94 26.11 0.00 0.00 0.00 2.12 0.00 0.00 0.00 9.78 37.37 17.26 0.00 0.00 0.00 29 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 30 Ix Intron 0 0.50 0.48 6.44 5.25 4.40 10.77 2.80 15.74 11.68 13.66 0.45 0.00 0.00 0.58 1.24 0.00 0.00 14.67 3.74 10.50 1.55 0.49 0.00 31 Ix_SR1 SilentIntronRegion 0 0.50 0.48 6.50 5.30 4.43 10.87 2.83 15.89 11.79 13.78 0.46 0.00 0.00 0.59 1.25 0.00 0.00 14.81 3.76 10.60 1.57 0.49 0.00 32 E4_Aa NovelBoundary 0 3.56 0.00 11.38 9.09 11.21 51.22 13.07 16.06 16.41 33.36 0.00 0.00 0.00 2.12 4.45 0.00 0.00 18.36 13.37 20.96 0.00 2.39 0.00 33 ER4a ExonRegion 0 0.10 3.48 2.08 4.53 1.57 11.09 1.55 13.63 7.69 12.91 4.67 0.00 0.00 0.78 0.00 1.74 0.00 18.41 14.72 10.56 0.48 3.57 0.00 34 E4a_E5a KnownJunction 0 0.00 0.00 3.67 3.80 0.00 2.73 0.00 13.43 17.45 12.87 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.45 23.44 5.62 3.09 0.00 0.00 35 E5_Aa NovelBoundary 0 3.70 2.57 11.18 3.46 0.00 36.00 12.63 30.64 11.69 27.21 2.21 0.00 0.00 0.00 4.45 0.00 0.00 16.95 24.57 9.20 0.00 0.00 0.00 36 ER5a ExonRegion 0 5.07 11.28 39.88 22.23 11.48 55.80 12.66 56.06 70.82 88.57 17.08 2.59 3.35 18.57 10.27 15.82 10.07 134.60 98.65 94.95 45.60 12.34 31.16 37 E5_Da NovelBoundary 0 0.00 6.18 4.61 7.72 0.00 15.96 3.71 24.07 33.30 19.13 2.68 0.00 0.00 5.30 0.00 0.00 0.00 18.24 30.02 17.26 2.59 5.63 4.01 38 E5a_E6a KnownJunction 0 3.11 9.74 61.77 17.48 10.44 51.73 18.02 49.08 70.98 72.42 22.69 12.15 13.15 39.38 18.05 7.26 0.00 133.56 28.14 45.32 41.76 22.41 22.96 39 Ix Intron 0 5.40 5.62 8.92 9.49 11.37 45.20 8.16 31.75 40.29 26.51 6.98 0.76 2.46 4.61 1.31 2.53 6.33 43.91 25.72 23.96 7.95 0.44 3.74 40 Ix_AR1 ActiveIntronRegion 0 5.44 5.66 9.00 9.57 11.47 45.57 8.23 32.01 40.62 26.74 7.03 0.76 2.48 4.65 1.32 2.55 6.38 44.28 25.94 24.16 8.01 0.45 3.78 41 E6_Aa NovelBoundary 0 0.00 2.89 20.67 17.78 14.69 36.34 11.39 55.29 53.18 48.08 2.37 0.00 0.00 4.77 4.45 4.36 13.09 87.55 13.27 32.85 5.44 6.00 10.84 42 ER6a ExonRegion 0 7.33 26.19 68.20 37.46 25.02 94.54 23.24 104.11 114.25 122.27 22.14 3.93 8.83 26.91 13.88 17.89 14.83 200.17 108.52 112.21 47.74 13.12 22.24 43 E6a_E7a KnownJunction 0 14.74 27.43 61.06 46.68 32.17 137.70 23.63 112.71 110.73 119.43 14.69 0.00 6.49 21.72 28.93 32.13 29.17 222.40 130.36 108.53 42.87 8.76 23.90 44 ER7a ExonRegion 0 9.38 36.58 49.98 41.48 26.87 93.74 26.85 109.05 97.45 105.54 11.18 1.38 7.49 29.52 11.36 15.48 17.86 169.89 71.58 105.94 49.00 10.59 17.78 45 E7a_E8a KnownJunction 0 6.74 35.52 53.46 35.66 30.73 134.52 18.99 163.76 132.46 130.79 14.79 0.00 7.95 33.73 20.40 27.77 15.99 219.08 135.63 120.68 75.18 5.69 16.82 46 ER8a ExonRegion 0 5.47 28.28 60.13 45.66 30.16 118.93 30.60 129.53 124.76 119.35 12.72 5.77 8.65 32.30 14.87 28.73 21.39 218.19 102.63 117.33 45.15 8.14 21.26 47 E8a_E9a KnownJunction 0 0.00 36.24 56.21 50.51 29.46 118.28 27.87 105.35 120.77 96.86 9.95 5.70 0.00 39.20 13.35 27.34 11.97 207.93 51.39 73.31 39.35 5.82 21.17 48 E9_Aa NovelBoundary 0 3.56 0.00 7.60 1.63 4.07 2.21 0.00 5.71 1.59 4.19 6.26 0.00 0.00 14.36 8.90 4.19 0.00 31.84 20.99 6.52 8.15 0.00 4.01 49 ER9a ExonRegion 0 3.45 44.25 52.47 32.24 34.84 106.04 32.06 105.92 108.15 129.59 21.19 2.01 5.17 31.59 10.80 23.76 15.99 185.30 79.61 104.82 48.28 14.54 26.45 50 E9_Da KnownBoundary 0 0.00 35.39 69.48 32.86 27.50 105.90 33.74 114.19 137.30 140.68 18.00 5.85 0.00 29.90 21.01 34.18 26.18 229.07 82.17 92.04 47.45 13.78 13.06 51 ER9b ExonRegion 0 12.76 32.11 72.06 33.11 18.97 133.16 32.20 108.09 111.47 141.15 26.96 3.28 2.42 28.76 18.55 24.71 19.77 213.14 117.67 116.72 59.72 16.39 28.71 52 E9b_E10a KnownJunction 0 25.93 26.38 80.42 37.86 19.35 154.12 33.03 143.68 135.39 153.70 27.80 5.85 0.00 26.31 18.67 27.60 42.08 263.81 152.85 119.33 57.14 25.23 27.66 53 ER10a ExonRegion 0 2.98 22.12 65.06 30.63 12.55 90.17 17.10 90.77 114.59 131.47 25.06 2.48 6.23 21.55 19.31 14.88 21.13 204.83 92.85 99.90 60.19 15.97 28.64 54 E10a_E11a KnownJunction 0 0.00 17.96 39.41 23.07 4.33 45.43 16.96 64.32 76.36 79.24 26.32 0.00 0.00 14.72 14.09 11.11 13.09 167.93 17.22 55.74 25.45 3.00 23.82 55 E10a_E12a KnownJunction 0 0.00 34.93 32.88 22.21 15.11 82.23 10.55 80.26 53.50 76.31 2.37 0.00 0.00 7.24 0.00 8.20 0.00 112.59 34.82 38.41 21.25 5.20 3.93 56 ER11a ExonRegion 0 0.95 21.67 35.08 25.46 11.34 65.53 10.97 60.59 77.91 71.68 22.28 2.73 6.91 13.16 19.16 14.78 13.72 168.29 58.34 65.85 41.81 8.28 17.77 57 E11a_E12a KnownJunction 0 3.56 38.61 26.82 19.11 32.51 86.77 10.25 55.45 57.81 47.01 12.48 6.30 12.50 14.36 18.67 24.61 14.31 150.10 105.04 79.26 47.45 10.96 16.99 58 ER12a ExonRegion 0 2.76 25.46 49.42 23.31 20.76 81.59 19.92 63.79 77.93 99.08 14.81 4.12 2.99 27.02 10.91 14.23 12.28 146.61 70.71 78.06 44.75 9.60 21.56 59 E12_Da NovelBoundary 0 3.56 0.00 16.41 10.12 3.82 21.52 0.00 11.13 14.35 20.33 2.05 0.00 0.00 9.59 0.00 0.00 0.00 37.14 31.62 46.60 2.84 0.00 0.00 60 E12a_E13a KnownJunction 0 0.00 0.00 2.63 0.00 0.00 5.51 2.12 0.00 10.13 3.60 5.11 0.00 6.82 9.83 6.18 4.36 4.77 6.63 9.51 23.97 6.30 2.88 4.35 61 E12a_E14a KnownJunction 0 0.00 30.19 25.37 14.85 16.81 50.37 18.50 34.26 42.85 62.00 7.05 0.00 6.82 4.94 0.00 3.16 4.58 73.29 34.26 31.96 31.57 8.63 11.61 62 Ix Intron 0 0.00 1.08 2.91 3.24 2.84 9.74 4.92 5.47 3.91 9.08 0.00 0.00 2.05 7.87 2.18 1.58 3.51 1.46 18.61 12.43 1.17 2.21 1.56 63 Ix_SR1 SilentIntronRegion 0 0.00 1.09 2.94 3.27 2.87 9.84 4.98 5.53 3.95 9.18 0.00 0.00 2.07 7.95 2.20 1.60 3.54 1.48 18.81 12.54 1.18 2.24 1.58 64 E13_Aa NovelBoundary 0 24.52 18.68 118.45 134.75 31.66 35.66 25.31 119.40 176.79 85.04 14.69 13.20 6.66 4.53 26.45 75.71 25.25 147.86 61.84 73.89 21.99 3.12 12.38 65 ER13a ExonRegion 0 9.20 19.81 5.35 8.31 12.41 17.34 19.39 16.07 21.30 14.02 8.92 2.92 5.04 20.12 12.58 24.76 12.87 24.18 31.31 43.78 18.60 6.07 21.14 66 E13_Da NovelBoundary 0 10.74 5.53 4.05 5.46 26.06 14.99 26.45 0.00 3.82 3.98 5.05 0.00 0.00 20.95 4.45 23.07 11.69 2.03 44.14 22.56 6.05 0.00 16.56 67 Ix Intron 0 6.60 13.73 25.23 18.78 15.84 42.86 16.91 42.01 44.35 49.35 10.64 1.48 3.30 17.44 3.28 9.26 6.17 78.23 64.19 46.85 27.01 9.09 17.39 68 Ix_SR1 SilentIntronRegion 0 6.61 13.76 25.28 18.81 15.87 42.94 16.95 42.10 44.44 49.45 10.66 1.48 3.30 17.47 3.29 9.28 6.18 78.39 64.32 46.95 27.07 9.11 17.42 69 E14_Aa NovelBoundary 0 6.67 3.16 26.99 16.88 7.81 32.99 13.03 24.85 11.40 17.81 2.68 0.00 0.00 4.94 0.00 3.59 0.00 37.97 13.65 18.60 9.39 2.63 12.72 70 ER14a ExonRegion 0 1.60 20.40 38.92 23.64 8.84 49.45 8.31 63.03 58.38 69.95 7.55 0.52 2.71 12.33 5.71 5.18 6.14 81.25 39.49 44.12 33.45 4.32 13.18 71 E14_Da KnownBoundary 0 7.33 2.50 8.49 5.73 3.57 37.59 6.40 11.71 14.44 15.77 0.00 0.00 6.82 2.47 0.00 0.00 3.55 16.42 8.19 15.72 14.83 0.00 7.85 72 E14a_E15a KnownJunction 0 3.78 28.48 43.29 32.10 30.14 80.12 15.46 116.44 72.45 85.10 5.11 0.00 0.00 14.19 8.90 0.00 0.00 108.69 33.88 76.89 23.35 5.82 4.10 73 ER14b ExonRegion 0 7.16 16.62 27.55 21.32 23.88 66.17 18.77 22.93 36.47 26.79 11.75 4.78 8.94 14.87 10.02 22.97 15.62 86.87 69.63 61.09 18.07 13.86 25.60 74 E14_Db NovelBoundary 0 5.93 51.57 19.63 22.57 96.43 118.45 49.06 20.99 48.70 25.89 11.32 5.70 19.15 24.66 10.14 22.30 34.78 58.08 140.33 56.63 48.99 15.19 50.71 75 Ix Intron 1 27.96 54.38 44.44 36.09 42.85 88.38 38.48 41.24 52.32 49.12 19.19 6.06 8.66 22.57 8.25 21.66 9.25 104.13 80.34 87.22 26.11 14.18 25.16 76 Ix_AR1 ActiveIntronRegion 0 30.45 59.04 48.39 39.30 46.65 96.08 41.79 44.90 56.97 53.49 20.39 6.59 9.43 24.13 8.27 23.32 9.78 113.22 87.21 94.23 28.05 15.44 27.14 77 E15_Aa NovelBoundary 0 23.56 22.89 71.55 39.16 23.77 55.03 37.14 36.72 36.26 36.96 14.58 0.00 13.64 24.60 0.00 11.79 13.09 89.29 52.99 49.60 23.17 6.12 7.51 78 ER15a ExonRegion 0 18.79 72.64 117.16 67.37 39.97 130.21 35.72 167.45 136.00 162.45 21.64 5.32 8.51 35.42 17.31 27.50 13.84 208.64 104.78 120.68 57.90 15.80 32.42 79 E15_Da KnownBoundary 1 74.83 93.27 199.73 104.48 43.55 223.85 67.92 311.09 219.01 258.01 27.69 0.00 0.00 34.26 37.09 95.10 16.92 288.60 218.92 208.95 98.91 51.93 78.19 80 ER15b ExonRegion 0 18.62 47.11 91.05 62.94 32.57 109.01 28.37 127.90 120.89 135.16 19.50 3.94 6.89 28.17 14.16 19.29 14.34 167.42 95.14 111.20 46.93 12.06 27.89 81 ER15c ExonRegion 0 2.00 3.16 8.85 12.80 0.00 7.03 1.40 3.84 5.76 3.63 1.72 0.00 0.00 0.63 0.00 0.33 0.00 12.01 14.51 6.15 3.31 0.00 4.73 82 ER15d ExonRegion 0 0.00 0.00 0.00 1.36 0.00 0.00 0.00 0.00 1.24 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6.37 0.00 0.00 0.00 0.00