Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 PYGO2 Gene 0 3.36 4.34 6.52 5.51 5.79 13.29 4.61 11.47 11.58 20.65 18.08 5.79 6.79 20.43 15.80 17.66 13.87 14.80 8.32 6.85 10.58 5.82 6.60 2 483463 Transcript 0 0.00 0.00 0.14 0.00 0.04 0.15 0.52 0.00 1.62 2.55 0.32 0.01 0.00 0.11 0.00 0.24 0.01 0.00 0.26 0.00 0.17 1.61 0.00 3 368456 Transcript 0 0.36 0.35 0.94 0.00 0.47 0.63 0.91 0.03 0.63 3.00 1.34 0.76 0.02 1.40 1.31 1.53 1.72 0.95 3.27 0.00 1.57 0.71 0.50 4 368457 Transcript 0 5.41 9.69 16.31 7.63 16.97 44.55 7.49 27.02 24.33 52.10 81.45 15.20 8.15 73.06 55.03 43.92 63.11 33.48 18.76 19.75 33.19 12.75 19.60 5 ER1a ExonRegion 0 0.00 0.00 0.28 0.00 0.09 0.29 1.04 0.00 1.73 2.30 0.64 0.01 0.00 0.23 0.00 0.47 0.03 0.00 0.51 0.00 0.35 0.21 0.00 6 E1_Da NovelBoundary 0 400.07 190.30 359.54 808.85 395.67 1210.10 585.91 530.51 835.41 629.38 370.41 117.94 80.03 233.92 119.66 126.80 209.54 89.33 493.10 370.14 2407.09 919.30 688.54 7 E1a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.50 2.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.00 0.00 8 E2_Aa NovelBoundary 0 6.22 3.22 4.79 2.90 0.00 2.21 4.42 1.93 18.17 11.66 2.00 6.00 0.00 4.53 8.90 12.90 4.77 14.76 4.33 9.01 0.00 6.00 3.59 9 ER2a ExonRegion 0 0.72 0.70 1.88 0.01 0.93 1.26 1.82 0.07 1.26 4.41 2.69 1.51 0.03 2.79 2.63 3.05 3.43 1.90 6.54 0.00 0.61 1.43 1.01 10 E2_Da NovelBoundary 0 0.00 3.29 5.06 1.76 20.54 12.49 4.15 11.13 30.18 12.28 6.95 0.00 0.00 2.71 0.00 7.60 4.77 10.53 40.94 5.31 0.00 3.12 4.10 11 E2a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.53 0.00 0.00 12 E3_Aa NovelBoundary 0 26.67 5.53 17.39 9.46 16.21 59.06 16.52 10.35 21.12 30.19 58.07 17.86 6.82 30.84 76.15 34.01 81.35 23.50 17.69 8.82 32.56 9.06 11.52 13 ER3a ExonRegion 0 10.81 9.47 15.06 8.47 8.48 30.38 9.97 22.85 19.29 43.92 67.74 7.16 9.55 77.29 62.96 43.10 58.31 33.92 17.31 17.72 34.54 16.15 16.68 14 E3a_E4a KnownJunction 0 3.78 15.98 32.61 12.35 40.66 100.06 11.44 56.07 52.05 110.86 176.15 38.11 13.64 140.44 101.12 86.99 130.81 65.58 38.50 41.03 63.63 21.86 40.63 15 I3 Intron 0 17.15 9.74 13.75 16.22 26.87 17.78 15.11 28.80 42.21 31.98 30.66 9.62 10.20 34.47 16.71 27.47 18.45 15.31 18.90 12.38 6.79 6.89 15.41 16 I3_AR1 ActiveIntronRegion 0 14.53 9.31 12.03 13.08 24.79 15.23 13.27 30.31 39.56 26.65 29.18 6.11 9.14 35.36 17.36 24.66 18.45 14.80 14.73 12.13 7.19 6.17 15.02 17 I3_AR2 ActiveIntronRegion 0 12.86 10.02 26.19 26.15 28.14 30.90 10.40 38.28 57.78 57.77 38.30 13.95 21.02 48.12 25.04 56.14 21.03 22.99 36.81 14.97 12.24 13.43 21.75 18 I3_SR1 SilentIntronRegion 0 35.66 12.76 22.35 28.25 36.57 22.45 12.20 22.57 49.78 58.01 28.64 8.79 16.34 29.04 16.35 48.63 19.71 20.21 42.37 13.80 9.15 8.33 17.53 19 I3_AR3 ActiveIntronRegion 0 21.04 10.24 12.64 19.67 30.54 21.06 24.52 23.20 44.28 32.80 34.54 20.99 8.22 29.20 11.98 20.28 17.44 13.02 18.77 12.07 2.83 6.79 14.16 20 E4_Aa NovelBoundary 0 9.93 20.59 19.51 29.87 27.84 51.11 39.17 45.76 34.52 65.60 29.43 18.31 6.49 46.80 15.20 12.90 25.34 21.35 8.56 21.09 6.12 5.69 11.61 21 ER4a ExonRegion 0 11.68 19.44 62.22 42.39 102.64 192.48 55.47 97.07 99.08 204.19 241.07 59.92 53.00 175.08 117.27 140.76 164.85 131.97 58.87 54.64 135.70 48.96 35.24 22 E4_Da NovelBoundary 0 7.19 9.01 4.11 15.92 23.60 2.27 17.75 21.97 23.50 12.57 7.21 0.00 6.82 4.94 14.22 10.51 3.55 6.09 4.42 12.59 2.78 3.00 4.35 23 E4a_E5a KnownJunction 0 46.82 42.95 95.30 74.48 190.58 284.10 92.96 139.45 155.81 299.19 273.23 79.08 84.57 214.32 178.87 241.56 188.59 213.82 90.36 80.02 151.60 101.83 47.55 24 I4 Intron 0 4.87 7.73 11.98 10.99 12.94 5.28 8.23 20.46 15.47 11.41 3.56 4.78 3.21 5.13 6.56 9.58 4.18 5.40 2.93 10.29 0.51 2.64 6.42 25 I4_SR1 SilentIntronRegion 0 4.90 7.76 12.04 11.04 13.00 5.30 8.27 20.55 15.53 11.46 3.58 4.80 3.22 5.15 6.59 9.62 4.20 5.43 2.95 10.33 0.51 2.65 6.45 26 E5_Aa NovelBoundary 0 6.67 16.97 7.92 14.35 23.85 21.18 6.62 22.88 28.82 22.35 4.84 0.00 0.00 0.00 0.00 8.03 0.00 19.03 3.76 34.32 0.00 0.00 7.00 27 ER5a ExonRegion 0 16.41 18.43 61.27 50.66 40.23 70.83 26.98 114.16 120.52 209.10 156.88 62.48 58.77 174.32 125.41 163.47 116.32 146.86 76.36 68.17 89.46 51.19 50.78 28 E5_Da KnownBoundary 0 3.33 9.67 34.80 25.07 12.48 18.80 8.08 65.31 56.71 95.71 36.27 24.16 12.50 66.46 66.01 46.74 43.20 51.98 48.66 11.38 25.88 27.25 20.15 29 ER5b ExonRegion 0 2.56 2.24 1.20 1.59 2.20 10.77 3.51 3.29 3.37 5.51 0.87 2.47 5.49 5.28 6.49 8.43 0.99 5.82 5.12 2.38 0.91 3.17 4.79 30 E5_Db KnownBoundary 0 13.78 12.63 5.35 5.13 7.64 2.78 0.00 6.53 4.66 9.91 14.74 5.40 0.00 5.06 5.19 15.47 7.76 12.48 0.00 3.26 3.09 3.12 0.00 31 ER5c ExonRegion 0 1.64 3.63 1.25 2.05 1.75 3.22 1.06 2.15 1.64 1.51 0.46 0.32 1.26 1.46 1.01 1.68 0.20 0.93 0.47 0.51 1.40 0.25 1.48