Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CTSS Gene 0 201.75 3.81 12.00 31.20 133.42 67.37 56.63 70.90 77.75 34.46 136.73 200.01 220.09 259.37 306.14 152.07 179.72 5.02 1.12 3.37 7.41 24.91 41.85 2 368985 Transcript 0 5.20 0.46 0.00 0.99 1.06 0.00 2.60 1.02 5.75 0.36 0.88 0.00 0.00 0.00 0.83 1.20 0.69 1.73 1.26 1.96 0.75 5.01 11.84 3 448301 Transcript 0 56.58 0.00 0.77 3.49 12.70 2.73 6.83 3.47 5.39 1.67 2.99 9.86 17.42 4.11 18.40 3.87 2.11 1.05 0.00 0.90 0.80 2.18 1.13 4 480760 Transcript 0 3.33 0.00 0.00 1.76 0.00 0.00 3.80 0.00 0.00 1.64 15.95 6.00 6.17 9.71 5.19 3.93 13.37 4.35 0.00 0.00 0.00 0.00 0.00 5 483930 Transcript 0 18.02 12.32 30.02 25.68 6.42 8.15 22.17 34.94 26.18 26.30 10.18 29.47 27.04 17.27 23.15 24.65 12.62 42.28 10.20 13.49 9.73 7.58 11.72 6 472977 Transcript 0 57.71 1.27 2.45 7.33 41.47 23.15 12.08 20.60 25.94 9.89 50.26 72.95 82.66 84.45 109.16 52.33 66.43 0.92 0.00 1.33 2.75 7.29 14.32 7 ER1a ExonRegion 0 5.20 0.46 0.00 0.99 1.06 0.00 2.60 1.02 5.75 0.36 0.88 0.00 0.00 0.00 0.83 1.20 0.69 1.73 1.26 1.96 0.75 5.01 11.84 8 E1_Ab KnownBoundary 0 7.48 3.35 0.00 1.60 0.00 0.00 7.99 0.00 4.34 1.67 0.00 0.00 5.68 0.00 0.00 0.00 4.77 2.03 0.00 3.00 5.75 6.25 21.26 9 ER1b ExonRegion 1 303.79 3.21 1.04 16.08 311.16 256.86 175.01 53.16 73.46 30.92 298.32 21.65 46.58 765.83 431.71 452.51 458.95 1.03 0.00 4.48 14.00 52.69 129.75 10 E1a_E2a KnownJunction 0 327.98 3.35 2.72 33.16 311.12 226.69 171.22 102.93 169.21 81.55 254.80 161.90 288.62 354.29 290.25 333.59 588.03 1.87 0.00 2.81 21.37 85.05 118.91 11 ER2a ExonRegion 0 150.24 10.39 5.43 18.86 94.20 85.84 51.66 55.56 94.12 44.26 210.90 157.17 167.80 165.81 178.08 171.77 401.19 5.34 4.60 3.14 23.61 56.45 66.33 12 E2_Ab KnownBoundary 1 101.20 2.43 4.79 14.22 30.22 24.53 11.66 53.40 76.68 33.36 250.12 143.30 166.87 243.22 199.77 114.84 423.19 2.11 4.05 9.72 11.24 31.78 79.22 13 ER2b ExonRegion 1 70.67 1.97 2.18 30.86 61.71 19.31 19.20 109.11 152.02 69.69 517.11 206.19 151.11 873.12 535.55 374.39 881.29 7.85 0.95 6.35 17.84 55.18 119.48 14 E2a_E3a KnownJunction 0 109.57 5.92 10.59 50.84 51.87 27.54 13.65 179.08 218.28 99.60 604.31 348.26 205.34 1986.77 1252.12 742.45 1127.82 12.35 0.00 4.92 30.70 81.13 147.93 15 ER3a ExonRegion 0 133.53 2.84 8.56 49.11 257.20 108.21 78.75 120.58 163.44 81.77 395.49 421.15 305.81 867.33 766.50 620.04 538.77 7.36 2.43 7.99 23.33 70.53 158.27 16 E3a_E4a KnownJunction 0 175.29 9.21 23.54 39.69 633.87 380.69 251.15 94.39 133.45 59.63 330.98 497.41 347.54 459.95 469.13 226.18 446.47 8.37 0.00 5.88 14.09 31.60 74.01 17 E3a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.15 0.00 0.00 0.00 0.00 0.00 0.00 3.12 0.00 18 ER4a ExonRegion 0 314.30 6.02 19.97 68.77 407.00 314.01 199.42 148.38 175.48 76.90 426.91 693.23 514.18 671.60 719.94 398.86 539.37 8.70 3.25 8.96 19.79 56.66 106.25 19 E4a_E5a KnownJunction 0 482.97 2.89 25.81 87.14 259.42 111.07 71.85 172.47 195.08 92.81 471.44 688.12 547.37 817.30 1008.96 543.11 631.98 8.04 0.00 8.88 24.96 82.24 128.56 20 ER5a ExonRegion 0 351.51 6.14 17.60 69.51 202.70 118.41 82.94 145.30 176.64 73.95 450.65 689.33 530.13 709.70 815.17 447.62 576.09 9.30 0.93 4.58 24.23 57.91 117.33 21 E5_Ab KnownBoundary 0 538.10 9.67 6.80 102.42 300.76 229.41 159.52 153.78 182.32 75.05 355.62 577.99 623.99 837.90 1009.58 457.91 541.75 17.45 0.00 12.27 11.12 72.44 99.45 22 ER5b ExonRegion 0 476.06 9.06 8.62 77.53 337.09 210.54 124.70 148.26 199.76 72.99 396.72 519.86 568.29 721.81 942.14 445.87 532.32 15.93 0.00 8.83 19.29 56.41 108.05 23 E5a_E6b KnownJunction 0 455.56 12.30 14.69 63.30 413.75 240.71 118.75 156.29 222.80 82.20 423.84 631.26 608.89 729.48 938.87 430.40 541.28 6.51 0.00 8.25 25.76 60.56 127.11 24 E5a_E8a KnownJunction 0 3.33 0.00 0.00 1.76 0.00 0.00 3.80 0.00 0.00 1.64 15.95 6.00 6.17 9.71 5.19 3.93 13.37 4.35 0.00 0.00 0.00 0.00 0.00 25 I5_AR2 ActiveIntronRegion 0 57.15 4.07 1.23 1.75 21.02 0.52 6.43 0.00 4.94 1.15 5.80 17.32 34.17 9.98 17.41 3.40 8.02 0.00 0.00 2.13 0.00 0.00 0.00 26 ER6a ExonRegion 0 100.53 2.54 3.06 14.65 82.95 46.30 24.16 36.73 51.87 19.78 100.51 138.54 165.32 168.91 218.32 100.31 132.86 1.85 0.00 2.66 5.51 14.58 28.63 27 ER6b ExonRegion 0 540.10 7.63 13.62 81.93 322.99 170.75 123.24 156.13 230.67 89.03 390.70 657.92 781.27 821.74 969.62 415.11 521.76 3.30 2.95 6.52 21.21 57.03 107.68 28 E6a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 24.76 14.61 0.00 4.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.50 29 E6a_E8a KnownJunction 0 420.00 5.66 27.53 93.23 408.74 149.86 169.50 152.55 238.48 83.97 312.18 543.33 813.58 775.15 993.88 400.75 439.64 2.57 0.00 11.95 5.62 58.66 75.89 30 E7_Aa NovelBoundary 0 376.07 137.94 103.40 144.67 142.95 177.68 187.56 142.32 158.19 83.97 65.96 44.11 25.97 50.62 56.74 121.85 97.34 109.60 109.46 109.68 49.30 64.23 101.58 31 ER7a ExonRegion 0 19.84 11.97 62.46 50.10 6.52 7.65 20.48 73.74 64.05 53.61 16.05 40.54 40.54 19.09 32.61 32.52 23.46 95.50 6.61 21.15 17.50 6.77 17.23 32 E7_Da NovelBoundary 1 844.52 903.72 2015.39 2157.04 628.35 375.35 1032.44 2357.98 2001.51 1911.90 301.18 132.04 99.67 65.93 288.03 629.41 689.20 2342.53 519.36 871.64 638.53 302.62 732.16 33 E7a_E8a KnownJunction 0 34.23 25.00 27.59 26.94 12.73 16.81 46.02 31.09 14.50 25.28 14.48 23.11 25.97 32.73 32.39 41.44 14.40 31.34 24.00 19.30 11.68 15.98 14.43 34 I7 Intron 0 42.20 1.56 0.70 0.00 10.26 0.70 2.54 1.98 0.71 1.31 2.98 8.20 27.72 10.07 22.32 7.98 8.86 1.76 0.00 1.63 0.85 2.40 2.25 35 I7_SR1 SilentIntronRegion 0 42.49 1.57 0.71 0.00 10.34 0.71 2.56 1.99 0.71 1.32 3.00 8.27 27.93 10.15 22.48 8.04 8.90 1.78 0.00 1.64 0.85 2.41 2.27 36 ER8a ExonRegion 0 430.89 6.71 25.70 103.90 366.32 150.87 189.96 166.61 219.60 89.02 416.33 698.23 792.62 770.53 905.92 390.27 533.76 6.07 0.15 9.65 16.34 71.81 111.24 37 E8_Da NovelBoundary 0 500.61 2.83 9.58 87.14 309.17 142.93 160.31 143.23 190.39 77.17 331.98 586.69 492.50 473.54 827.12 317.27 483.31 1.58 0.00 10.16 15.88 84.44 112.76 38 E8b_E9a KnownJunction 0 520.31 17.37 23.27 95.86 415.03 233.33 171.66 176.95 252.43 85.58 440.80 669.97 889.88 790.28 1188.95 376.14 633.47 1.58 3.76 0.00 17.73 60.93 121.56 39 ER8b ExonRegion 0 432.66 9.95 17.80 97.27 377.00 190.81 151.63 169.57 242.93 89.34 446.09 759.25 795.82 742.22 1064.00 386.22 619.87 1.36 1.51 3.02 17.40 73.36 130.14 40 I8 Intron 0 26.71 0.68 0.55 1.32 8.10 2.03 6.29 2.09 2.17 1.11 4.76 15.02 45.89 8.14 16.79 7.95 12.37 0.91 0.22 2.55 0.31 1.65 1.96 41 I8_SR1 SilentIntronRegion 0 26.72 0.68 0.55 1.32 8.11 2.03 6.29 2.09 2.17 1.11 4.77 15.03 45.92 8.15 16.80 7.96 12.38 0.91 0.22 2.55 0.31 1.65 1.97 42 ER9a ExonRegion 0 707.03 15.78 35.77 92.40 501.51 218.98 195.06 242.10 242.99 85.14 351.85 731.01 978.27 704.02 939.35 371.52 415.83 2.87 2.65 4.67 7.73 68.16 97.98 43 E9_Da KnownBoundary 1 1526.34 11.77 38.02 57.47 567.40 252.98 316.51 205.37 195.34 84.24 286.76 612.20 1014.22 689.04 1021.70 282.40 326.51 3.52 0.00 5.82 3.15 60.93 82.63 44 E9a_E9b KnownJunction 0 14.89 0.00 1.83 0.00 0.00 0.00 0.00 4.48 0.00 0.00 0.00 7.35 0.00 0.00 0.00 4.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 45 ER9b ExonRegion 0 759.72 6.36 27.85 58.64 249.37 141.23 139.81 165.37 172.18 74.91 231.87 532.13 572.37 471.73 683.34 277.03 275.30 3.89 2.81 3.37 10.62 35.45 56.48 46 E9_Db KnownBoundary 0 1450.55 3.35 23.39 77.05 476.23 159.06 163.14 178.59 178.64 93.26 231.11 415.49 535.84 493.15 851.35 351.45 263.30 6.18 4.80 3.26 16.00 54.74 102.44 47 ER9c ExonRegion 0 158.89 2.89 12.29 23.32 86.29 30.01 32.72 57.25 48.14 25.33 49.84 79.36 115.61 101.27 173.68 62.53 58.42 1.16 0.73 1.95 3.71 15.58 17.86 48 E9_Ab KnownBoundary 0 246.93 218.32 220.90 190.69 175.89 110.45 254.64 241.76 216.00 130.15 47.43 72.02 65.09 56.33 104.70 162.69 121.08 237.07 97.89 233.62 49.92 35.70 89.72 49 ER9d ExonRegion 0 21.43 0.00 0.00 1.16 8.11 0.00 0.27 0.46 0.00 0.00 1.17 1.87 4.63 2.89 1.30 0.00 0.69 0.00 0.00 0.00 0.00 0.00 0.00 50 E9_Dc KnownBoundary 0 47.86 5.33 1.74 0.00 0.00 7.33 2.25 0.00 1.79 0.00 9.42 18.16 29.54 4.41 18.30 3.67 3.74 0.00 0.00 0.00 0.00 12.68 0.00 51 ER9e ExonRegion 0 36.80 0.00 0.27 1.18 6.26 2.58 4.28 2.03 3.84 1.19 2.25 8.04 7.62 2.37 7.21 2.82 0.73 0.18 0.00 0.32 0.21 0.87 0.91 52 E9_Dd KnownBoundary 0 278.12 0.00 6.53 16.38 55.26 27.48 29.50 12.45 28.41 5.80 9.21 23.56 50.16 13.30 50.07 9.57 7.48 5.02 0.00 0.00 2.78 8.21 11.01 53 ER9f ExonRegion 0 113.15 0.00 1.54 6.98 25.41 5.46 13.67 6.94 10.79 3.34 5.97 19.72 34.85 8.21 27.65 7.74 4.23 2.09 0.00 1.79 1.60 1.24 2.26 54 IG47 Intergenic 0 12.12 0.27 0.24 0.36 3.80 0.57 2.41 0.91 1.39 0.30 0.69 2.88 5.87 2.92 2.87 1.98 1.32 0.00 0.14 0.94 0.29 0.18 0.39 55 IG47_SR3 SilentIntergenicRegion 0 12.44 0.28 0.25 0.37 3.92 0.59 2.49 0.92 1.43 0.30 0.71 2.97 6.06 3.01 2.96 2.04 1.36 0.00 0.15 0.95 0.30 0.19 0.40