Order	SeqName	SeqType	IsAE	NBL01_MYCN	NBL05_MYCN	NBL09_MYCN	NBL10_MYCN	NBL02	NBL03	NBL04	NBL06	NBL07	NBL08	NBL11_Rel2	NBL11_Rem1	NBL11_Rel1	NBL12_Rel_Left	NBL12_Rel_Right	NBL13_Rel_Left	NBL13_Rel_Right	NBL14_MYCN_Met	NBL14_MYCN_Pri	NBL15_MYCN_Rel1	SKP01	SKP02	SKP03
1	RPRD2	Gene	0	65.57	119.97	71.22	101.23	103.14	127.88	82.36	126.62	128.54	138.68	148.53	94.70	137.93	129.32	93.48	117.98	125.75	146.01	98.26	107.12	79.66	85.46	72.71
2	492220	Transcript	0	3.70	6.56	4.03	13.11	6.03	2.36	6.06	4.10	4.89	3.78	0.50	6.70	5.25	0.61	1.34	1.02	3.05	2.40	0.81	7.07	0.56	1.14	1.02
3	401000	Transcript	0	31.48	63.40	27.41	50.85	64.41	62.36	42.71	50.34	40.26	41.01	36.45	27.70	35.28	33.89	29.96	31.49	25.06	21.06	28.67	36.90	13.64	25.10	16.76
4	369067	Transcript	0	13.17	24.68	7.33	31.97	15.18	7.55	25.40	10.53	13.23	11.45	5.31	11.99	10.44	4.03	7.77	8.54	12.79	7.54	3.25	17.34	1.50	5.63	4.87
5	369068	Transcript	1	30.26	72.87	18.73	27.24	60.68	112.45	109.46	94.08	131.60	80.83	198.82	174.35	165.07	99.34	37.56	112.99	162.10	83.06	56.11	135.10	65.15	96.19	79.10
6	IG36	Intergenic	0	4.44	16.48	5.05	18.78	11.65	5.13	8.46	5.57	5.85	4.24	0.31	5.58	2.23	0.92	2.15	2.64	1.89	4.73	7.49	10.61	0.35	1.13	2.71
7	IG36_AR2	ActiveIntergenicRegion	0	2.12	11.04	1.23	8.18	10.70	3.67	5.67	1.73	2.47	1.15	0.00	12.99	9.38	0.00	0.00	2.97	3.30	0.00	3.19	19.15	0.00	0.00	0.00
8	IG36_SR2	SilentIntergenicRegion	0	4.49	16.75	5.21	19.26	11.74	5.27	8.57	5.72	6.00	4.36	0.32	5.49	2.16	0.95	2.24	2.68	1.86	4.93	7.74	10.47	0.36	1.17	2.82
9	ER1a	ExonRegion	0	4.58	2.38	1.19	6.75	6.65	1.82	3.08	1.28	5.49	1.70	0.64	16.40	3.87	1.09	1.41	0.98	1.09	4.57	1.05	4.61	0.73	0.69	0.00
10	E1a_E3a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00
11	I1	Intron	1	10.10	9.53	4.58	10.02	8.37	14.63	11.54	10.17	15.75	9.56	39.99	13.01	5.26	19.39	9.81	20.91	24.44	21.80	15.98	31.33	17.57	6.34	9.54
12	I1_AR2	ActiveIntronRegion	1	23.01	21.23	10.58	20.79	16.55	34.01	25.58	21.15	33.07	21.95	91.46	24.48	11.73	44.50	22.37	48.24	55.80	49.15	35.08	71.26	39.56	14.09	21.56
13	ER2a	ExonRegion	0	1.69	11.93	1.37	4.92	15.92	22.81	7.83	4.42	5.82	6.98	13.76	7.93	2.46	22.19	11.36	28.97	8.84	9.24	12.58	16.55	12.33	6.32	10.95
14	E2_Ab	KnownBoundary	0	7.48	3.35	0.00	1.83	16.47	14.76	6.01	7.06	3.01	6.02	10.32	12.00	6.82	9.42	0.00	12.39	0.00	8.75	4.42	16.75	5.81	3.12	11.18
15	E2_Ac	KnownBoundary	0	3.33	45.85	4.88	21.54	19.52	33.84	34.40	9.28	22.19	25.28	6.42	7.65	0.00	4.47	4.45	47.34	32.54	53.64	12.99	27.68	17.67	21.13	36.19
16	ER2b	ExonRegion	0	11.99	54.91	4.49	17.72	42.81	72.13	45.46	16.13	17.29	22.94	40.59	17.32	9.38	43.31	26.11	96.10	46.21	38.80	53.09	46.10	30.85	32.64	35.24
17	ER2c	ExonRegion	1	16.89	44.81	19.93	36.68	27.19	50.61	45.05	56.08	83.55	102.21	145.01	37.05	33.62	91.45	42.05	112.64	148.00	112.15	55.96	94.16	76.60	50.36	59.18
18	E2_Da	NovelBoundary	0	6.67	5.92	17.95	45.28	12.14	2.33	16.74	11.25	13.31	16.76	9.95	0.00	6.82	4.53	20.27	20.85	13.93	39.84	21.27	11.95	0.00	0.00	20.74
19	E2a_E4a	KnownJunction	1	25.56	48.28	16.68	63.56	54.84	76.55	38.33	95.50	159.81	155.15	288.28	50.42	94.15	131.38	87.15	430.74	202.52	299.58	171.86	181.21	107.49	133.80	233.89
20	I2	Intron	0	15.25	21.17	14.45	38.17	23.58	9.69	27.24	21.43	16.81	14.46	1.90	10.74	13.73	1.19	7.34	7.92	8.64	10.33	8.50	21.19	1.90	1.22	5.37
21	I2_SR1	SilentIntronRegion	0	13.12	25.09	16.60	44.12	25.62	9.46	28.47	30.06	22.57	21.59	2.91	9.44	13.09	1.72	8.65	10.81	13.04	16.63	9.81	24.83	2.94	1.28	7.74
22	I2_SR2	SilentIntronRegion	0	15.88	20.02	13.82	36.43	22.98	9.76	26.89	18.89	15.12	12.37	1.60	11.13	13.92	1.03	6.95	7.07	7.35	8.48	8.12	20.12	1.59	1.21	4.68
23	E3_Aa	NovelBoundary	0	45.34	24.93	41.10	105.95	34.80	2.73	40.28	44.52	33.97	21.14	5.00	0.00	20.45	2.30	10.75	3.76	7.95	18.82	13.93	37.39	2.47	6.00	3.41
24	ER3a	ExonRegion	0	10.21	23.88	14.95	45.69	17.49	7.63	21.15	15.12	14.06	13.42	1.34	10.40	17.13	1.34	3.93	3.09	6.35	5.05	2.17	20.91	1.53	1.25	4.08
25	E3_Da	NovelBoundary	0	28.89	49.14	42.64	105.98	23.68	5.51	36.17	53.11	34.29	21.30	2.16	24.91	26.78	0.00	9.89	8.63	7.39	19.15	10.54	29.72	3.15	0.00	7.68
26	E3a_E4a	KnownJunction	0	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	0.00	4.77	0.00	0.00	2.75	0.00	2.63	0.00
27	I3	Intron	0	23.48	24.58	19.32	42.13	25.50	10.54	26.47	16.48	18.23	13.65	2.18	10.09	11.75	1.32	4.92	5.06	6.02	10.60	6.88	18.13	3.23	0.87	3.08
28	I3_SR1	SilentIntronRegion	0	5.61	24.32	17.05	44.03	14.86	2.22	17.72	20.75	25.36	16.27	3.11	14.16	16.92	1.39	6.79	6.77	12.00	7.84	6.68	18.76	1.48	1.68	2.19
29	I3_AR1	ActiveIntronRegion	0	41.56	28.97	29.58	60.81	38.07	16.03	36.22	21.95	26.83	22.11	2.98	13.75	14.91	1.94	5.44	7.21	4.34	12.41	5.93	21.16	3.07	0.31	4.19
30	I3_SR2	SilentIntronRegion	0	64.71	57.07	22.08	54.14	67.18	11.51	55.98	25.04	14.31	13.65	2.39	8.12	26.07	1.67	5.07	6.17	8.80	11.48	11.47	17.36	6.97	1.71	3.77
31	I3_AR2	ActiveIntronRegion	0	95.24	45.76	32.47	57.92	29.88	10.70	36.63	36.59	18.53	19.12	2.90	25.98	23.45	7.58	11.61	5.94	6.60	22.79	3.72	20.92	2.20	0.00	11.75
32	I3_SR3	SilentIntronRegion	0	14.91	11.14	19.96	42.88	20.78	11.28	20.00	15.01	16.53	8.04	1.82	8.66	6.48	1.26	4.81	4.93	3.93	10.86	6.89	18.46	4.29	1.52	3.71
33	I3_AR3	ActiveIntronRegion	0	19.94	18.50	21.95	32.99	17.38	19.06	34.84	12.55	19.13	17.21	1.88	5.79	19.36	0.96	6.82	6.76	4.29	12.25	10.35	21.43	3.58	0.00	2.86
34	E4_Aa	NovelBoundary	0	68.01	67.88	31.96	123.06	61.88	43.72	95.97	45.88	30.76	29.66	0.00	25.21	6.82	0.00	22.99	7.35	8.60	36.77	24.57	58.61	5.19	0.00	0.00
35	ER4a	ExonRegion	0	14.46	58.46	32.00	72.74	58.52	132.34	75.44	107.30	145.12	133.34	243.11	139.31	146.00	133.74	51.00	150.09	157.76	143.06	74.64	135.37	67.87	101.92	93.63
36	E4_Da	NovelBoundary	0	3.41	2.83	6.39	31.50	7.13	5.22	6.05	9.73	3.44	15.07	2.21	0.00	27.60	3.00	4.45	8.37	4.49	9.41	0.00	11.44	0.00	0.00	4.18
37	E4a_E5a	KnownJunction	0	27.93	88.34	21.20	51.58	72.33	144.06	121.36	110.57	145.37	134.77	243.64	160.85	168.66	116.02	45.49	125.27	187.38	79.92	78.40	121.89	56.16	63.74	59.16
38	I4	Intron	0	11.99	10.67	8.55	21.39	14.11	6.26	13.60	6.69	6.57	6.19	2.26	7.24	9.67	1.75	7.00	7.49	5.58	5.65	5.71	9.78	1.55	1.12	3.05
39	I4_SR2	SilentIntronRegion	0	12.08	10.83	8.67	21.48	14.44	6.37	13.85	6.71	6.71	6.18	2.27	7.37	9.67	1.78	7.02	7.64	5.66	5.67	5.83	9.84	1.55	1.15	3.05
40	ER5a	ExonRegion	0	30.13	106.29	29.30	67.74	50.12	112.19	116.38	119.83	147.85	143.02	250.74	191.48	191.22	145.75	50.38	126.24	179.10	78.32	96.76	139.88	59.83	119.28	71.18
41	E5_Da	KnownBoundary	0	2.96	20.72	5.82	20.01	22.16	12.78	14.66	9.20	14.12	12.54	5.16	18.91	13.15	2.35	10.88	7.69	7.85	0.00	0.00	17.45	0.00	11.33	4.35
42	E5a_E6a	KnownJunction	0	42.08	82.75	22.56	31.20	27.59	122.54	118.84	103.67	141.23	77.50	227.58	170.76	124.83	94.71	33.99	86.47	183.82	70.35	55.91	124.38	71.11	114.57	78.45
43	E5a_E7a	KnownJunction	0	19.86	60.91	11.00	31.06	3.82	39.41	31.58	21.36	23.67	60.14	92.29	86.88	60.55	80.11	28.93	28.11	64.61	19.44	49.88	14.06	13.34	17.82	28.85
44	ER5b	ExonRegion	0	13.17	24.68	7.33	31.97	15.18	7.55	25.40	10.53	13.23	11.45	5.31	11.99	10.44	4.03	7.77	8.54	12.79	7.54	3.25	17.34	1.50	5.63	4.87
45	E5_Db	NovelBoundary	0	86.61	72.42	14.81	77.68	41.43	2.61	42.18	29.61	22.31	14.59	6.95	0.00	34.41	7.12	19.16	12.22	12.06	9.82	4.42	29.85	3.09	8.45	7.26
46	I5	Intron	0	22.68	32.28	10.15	25.39	13.81	10.92	27.85	13.28	12.05	8.81	1.15	14.56	22.56	4.20	7.32	7.67	9.83	10.04	5.69	20.27	3.94	5.37	9.32
47	I5_AR1	ActiveIntronRegion	0	22.85	32.54	10.23	25.59	13.91	11.00	28.05	13.38	12.14	8.87	1.16	14.67	22.73	4.24	7.37	7.73	9.90	10.11	5.73	20.43	3.97	5.42	9.40
48	E6_Aa	NovelBoundary	0	52.53	21.97	11.92	47.45	28.27	7.89	29.59	21.19	11.81	15.07	9.79	18.16	40.42	10.65	8.90	11.54	4.58	17.04	21.27	18.28	0.00	3.12	8.19
49	ER6a	ExonRegion	1	29.28	76.21	20.33	34.56	61.40	102.43	99.82	85.71	129.69	85.65	191.36	161.13	134.69	98.90	30.98	126.62	171.94	87.01	41.74	139.14	66.90	98.67	68.30
50	E6_Da	NovelBoundary	0	38.82	24.27	16.11	51.61	29.46	18.97	52.91	26.00	21.27	16.82	10.06	7.35	34.09	2.30	14.09	15.64	24.87	11.23	9.13	26.27	5.44	9.06	22.28
51	E6a_E7a	KnownJunction	0	19.41	59.66	13.31	15.95	93.04	112.38	109.70	92.87	123.87	79.35	177.52	191.16	235.70	104.42	47.72	125.86	130.53	91.82	70.68	141.77	57.45	75.32	90.57
52	I6	Intron	0	22.63	25.66	11.97	36.44	20.39	12.77	30.05	10.76	13.65	13.02	5.15	14.21	17.64	4.79	6.77	7.91	15.14	9.38	10.70	20.13	3.97	5.04	7.70
53	I6_AR1	ActiveIntronRegion	0	32.59	28.79	13.37	32.87	20.09	12.85	31.36	11.82	12.84	11.54	5.04	15.32	18.11	5.00	8.30	7.63	13.95	10.54	13.13	21.11	4.75	4.62	8.14
54	I6_SR1	SilentIntronRegion	0	12.94	22.98	10.77	40.71	20.91	12.98	29.25	9.84	14.74	14.79	5.37	13.40	17.44	4.58	5.27	8.38	16.70	8.41	8.46	19.57	3.27	5.51	7.36
55	E7_Aa	NovelBoundary	0	0.00	15.92	8.99	24.34	36.59	50.88	61.21	7.15	9.66	5.91	8.05	6.15	8.28	7.30	8.90	8.37	13.18	0.00	3.86	5.50	3.15	6.18	8.71
56	ER7a	ExonRegion	0	41.09	144.88	34.24	51.35	130.51	156.56	142.19	151.88	158.70	143.54	270.90	330.75	308.57	191.52	75.21	158.42	212.81	135.90	130.90	155.68	88.94	117.03	94.36
57	E7_Da	NovelBoundary	0	8.59	17.83	4.97	44.58	36.25	10.96	16.56	19.35	9.55	5.80	0.00	27.01	13.64	0.00	4.45	6.92	0.00	0.00	15.72	8.18	0.00	0.00	0.00
58	E7a_E8a	KnownJunction	0	44.82	163.00	46.30	62.00	158.91	142.53	134.87	155.67	165.33	147.85	279.44	350.51	307.29	208.14	76.27	148.68	201.22	135.97	161.89	167.97	90.26	119.53	85.19
59	ER8a	ExonRegion	0	38.13	149.96	50.86	88.30	92.81	158.01	131.04	134.68	183.59	164.42	239.54	288.71	257.03	196.54	71.75	172.22	213.39	137.29	114.45	165.79	98.14	113.54	104.93
60	E8a_E9a	KnownJunction	0	59.05	182.47	56.56	100.99	110.61	154.00	161.81	146.35	188.02	194.56	235.53	256.13	294.46	183.30	67.62	204.56	223.19	103.01	111.25	183.57	55.29	150.76	135.98
61	ER9a	ExonRegion	0	71.16	215.92	69.28	145.53	138.44	202.08	186.13	179.77	233.16	205.60	281.26	314.45	315.91	214.64	90.32	188.21	225.36	130.43	121.80	196.95	77.17	156.20	119.48
62	E9a_E10a	KnownJunction	0	83.57	227.72	70.10	144.67	137.95	226.74	175.37	212.97	240.83	224.08	342.93	272.94	427.41	290.66	112.37	239.00	248.99	182.27	155.58	203.19	116.94	196.80	128.04
63	ER10a	ExonRegion	0	58.07	208.94	65.75	133.00	115.98	188.21	126.45	177.85	216.76	204.49	308.75	263.70	291.73	266.92	110.27	232.51	288.41	281.77	164.28	208.50	156.77	180.92	130.53
64	E10a_E11a	KnownJunction	0	54.45	189.05	77.85	129.65	133.45	231.46	140.70	208.70	268.28	254.01	382.41	151.85	202.10	244.57	139.44	350.25	312.20	312.77	159.44	192.20	218.38	179.97	149.04
65	ER11a	ExonRegion	0	77.02	164.51	83.29	141.62	126.86	217.80	135.07	234.12	267.91	278.84	378.80	240.47	319.89	312.64	121.00	297.11	326.24	389.83	228.09	215.30	220.48	188.62	197.18
66	E11a_E12a	KnownJunction	0	89.42	209.24	86.04	111.57	205.26	381.37	189.15	248.13	276.59	291.86	296.50	295.45	329.69	306.91	142.53	340.25	344.46	330.80	291.40	291.85	192.07	180.21	259.59
67	E11a_E13a	NovelJunction	0	10.74	3.35	3.08	2.06	7.47	5.79	8.57	9.53	13.48	11.87	18.48	0.00	13.15	10.01	16.94	23.75	27.49	15.05	8.66	14.25	17.79	11.63	22.96
68	I11_AR1	ActiveIntronRegion	0	9.71	15.79	6.37	20.85	18.18	9.07	20.49	9.23	6.27	6.33	3.15	7.82	9.16	2.84	5.69	3.89	3.94	5.01	7.06	6.16	2.12	1.60	2.50
69	I11_SR2	SilentIntronRegion	0	9.77	10.15	6.41	20.27	14.34	3.73	11.74	7.62	4.76	3.16	4.64	1.32	7.29	2.98	7.51	8.24	10.98	5.94	14.13	7.47	5.29	6.94	9.22
70	E12_Aa	NovelBoundary	0	104.91	74.13	27.94	98.26	43.38	19.53	33.70	35.61	32.09	23.42	2.37	5.85	6.66	4.83	12.11	28.20	20.57	47.96	30.78	17.51	5.68	11.33	58.73
71	ER12a	ExonRegion	0	69.08	152.11	72.12	100.91	120.30	174.72	108.33	164.04	201.28	224.66	278.52	205.25	311.46	260.90	122.34	259.58	264.40	290.85	189.47	189.68	189.89	144.15	141.72
72	E12a_E13a	KnownJunction	0	55.57	123.40	58.90	76.18	119.95	128.62	110.76	150.41	169.33	236.79	211.58	204.22	345.27	220.26	127.08	198.15	238.43	222.77	179.86	193.09	218.07	110.53	104.40
73	I12_AR4	ActiveIntronRegion	0	9.06	29.83	8.03	25.03	12.35	4.68	14.55	15.01	10.74	9.29	2.12	7.34	6.89	1.52	5.75	5.11	7.39	4.14	3.62	9.82	2.14	5.59	3.29
74	I12_AR5	ActiveIntronRegion	0	8.47	38.64	15.60	38.41	16.05	0.83	18.66	19.01	15.61	13.76	5.27	23.62	6.40	0.00	2.90	12.70	1.80	9.41	5.79	12.38	1.00	7.39	11.75
75	I12_AR6	ActiveIntronRegion	0	9.07	35.30	11.73	36.51	13.19	1.83	24.30	16.54	16.59	15.57	6.35	30.92	8.38	1.62	2.90	11.04	3.54	14.39	5.69	11.40	0.00	3.87	10.07
76	I12_SR3	SilentIntronRegion	0	8.93	19.10	6.53	31.38	6.28	3.99	28.29	13.19	18.37	14.79	4.20	16.19	13.87	1.77	5.93	3.88	7.46	8.84	2.42	14.99	3.88	10.19	1.40
77	I12_AR7	ActiveIntronRegion	0	12.70	10.17	3.68	25.89	16.05	5.50	16.55	12.53	18.37	16.34	1.93	12.99	17.59	3.25	11.61	2.97	3.30	7.85	6.37	15.69	11.29	18.23	2.94
78	I12_SR4	SilentIntronRegion	0	13.72	14.57	9.39	39.79	15.75	8.75	22.38	18.67	11.25	19.33	4.96	14.66	11.34	2.98	5.35	12.01	9.36	9.25	8.28	13.22	6.38	11.66	7.27
79	I12_AR8	ActiveIntronRegion	0	11.82	16.22	9.59	30.88	10.51	10.51	18.96	10.08	9.76	19.50	2.88	10.98	2.52	0.75	6.72	4.57	12.56	10.82	2.18	17.38	8.17	11.13	6.23
80	I12_AR9	ActiveIntronRegion	1	15.34	24.40	7.20	31.01	24.08	10.54	30.45	12.53	9.26	18.35	1.93	12.99	4.69	1.62	14.51	5.94	26.41	9.01	6.37	24.73	4.41	12.50	2.94
81	I12_AR10	ActiveIntronRegion	0	7.84	23.39	5.55	21.41	8.81	3.51	16.33	12.48	8.04	8.57	1.78	3.82	12.06	1.54	5.24	15.80	10.71	10.44	11.53	16.85	3.19	6.42	8.81
82	ER13a	ExonRegion	0	99.18	150.93	122.33	134.95	130.41	182.71	92.85	187.74	194.02	225.86	226.28	108.51	200.95	216.28	175.34	199.27	195.31	275.89	166.78	156.50	147.76	130.16	123.66
83	E13_Da	KnownBoundary	0	95.87	85.97	13.04	24.37	88.54	103.41	76.93	50.64	13.14	16.60	14.79	6.75	13.64	36.91	17.68	6.66	3.55	0.00	14.12	5.37	5.62	58.91	15.71
84	ER13b	ExonRegion	0	61.27	114.87	53.45	96.78	112.89	101.90	77.60	96.26	74.69	75.04	59.14	47.48	68.09	45.59	48.56	34.02	41.29	32.88	44.75	57.24	14.96	43.89	22.56
85	IG37_AR1	ActiveIntergenicRegion	0	1.97	2.45	0.49	4.27	4.71	0.84	3.58	11.31	22.94	7.58	0.52	0.93	0.00	1.16	0.00	0.00	0.00	4.17	1.75	2.84	0.00	1.21	0.00