Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 UBQLN4 Gene 0 76.85 111.38 153.76 162.30 87.76 121.50 81.20 119.61 84.50 172.21 216.21 76.85 89.87 216.20 177.61 134.23 159.09 217.46 174.21 129.13 131.59 131.71 122.78 2 368309 Transcript 0 16.86 33.25 85.49 64.65 20.59 54.81 24.65 77.64 73.60 154.11 175.15 61.68 67.39 151.78 79.58 89.17 144.26 186.68 137.38 97.35 130.64 90.77 73.78 3 368308 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 368307 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 472638 Transcript 0 3.33 3.35 0.00 0.00 0.00 0.00 2.25 1.89 0.00 1.13 2.37 0.00 0.00 7.77 4.45 3.67 4.21 13.39 0.00 0.00 0.00 3.12 3.59 6 459954 Transcript 0 16.44 11.95 22.82 16.74 17.02 26.32 19.42 22.53 13.95 22.39 12.31 19.22 24.32 29.54 15.16 22.02 22.84 42.68 28.74 15.71 13.50 13.03 14.77 7 ER1a ExonRegion 0 0.15 8.05 1.54 0.41 9.10 22.01 6.20 0.81 0.23 0.84 17.04 0.00 6.23 8.56 8.37 8.36 8.63 5.07 17.16 5.47 5.70 1.55 9.19 8 E1_Ab KnownBoundary 0 3.78 26.31 2.87 0.00 15.62 41.23 19.65 0.00 1.50 0.00 36.38 5.85 0.00 6.71 8.78 41.19 22.35 9.78 27.48 20.45 14.52 0.00 7.68 9 E1_Ac KnownBoundary 0 12.37 50.65 11.71 15.12 38.54 80.24 46.46 18.85 14.03 31.51 61.28 0.00 0.00 19.66 57.85 49.47 70.59 63.63 25.79 25.44 30.15 41.15 94.24 10 ER1b ExonRegion 1 8.47 43.72 6.54 13.40 32.55 74.88 34.53 12.96 8.23 19.98 78.12 0.00 1.56 25.44 67.70 50.03 80.87 35.57 48.05 24.11 34.16 28.13 70.23 11 ER1c ExonRegion 1 15.29 44.09 18.11 25.51 22.60 57.28 33.31 23.68 17.61 61.90 83.57 2.89 5.96 27.20 42.78 53.83 99.03 76.20 55.21 37.22 60.06 30.03 91.69 12 E1_Ad KnownBoundary 0 2.89 3.22 23.59 16.38 0.00 7.84 4.15 31.18 19.13 66.11 31.32 0.00 0.00 0.00 0.00 12.22 50.21 52.31 4.42 14.19 20.14 2.33 7.60 13 ER1d ExonRegion 0 5.06 8.75 13.61 8.47 0.24 5.53 1.68 12.90 13.12 36.29 27.54 9.20 2.60 4.79 2.07 7.48 27.47 25.31 4.38 9.92 27.39 1.75 1.36 14 E1a_E2a KnownJunction 0 3.78 11.84 14.46 13.09 3.90 2.38 0.00 12.36 17.13 41.56 48.54 22.81 14.45 7.00 8.90 15.81 36.84 48.38 17.41 11.76 41.82 0.00 0.00 15 E2_Aa NovelBoundary 0 9.93 8.75 25.52 41.09 17.06 2.16 8.08 25.84 15.60 26.57 7.00 6.30 14.12 18.84 5.69 13.07 26.27 77.64 13.65 17.71 18.04 33.49 15.79 16 ER2a ExonRegion 0 15.37 10.62 72.86 74.82 10.84 20.92 14.65 57.29 63.55 167.96 163.98 34.92 28.45 113.44 100.32 110.85 137.64 195.53 109.33 101.40 110.52 66.12 98.40 17 E2a_E3a KnownJunction 1 9.78 13.02 41.96 48.55 33.28 97.90 34.36 28.14 54.43 132.67 128.66 42.16 6.66 86.41 22.99 34.01 75.36 108.48 39.25 66.41 98.84 35.27 30.65 18 E3a_E8c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 E3b_E8d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 20 ER3a ExonRegion 1 3.58 24.87 43.92 40.89 20.17 65.31 39.01 19.54 48.45 125.89 126.83 26.31 11.18 78.83 24.55 27.89 93.69 62.82 26.22 67.27 100.18 33.02 17.85 21 ER3b ExonRegion 1 2.12 28.47 50.24 46.34 18.73 73.35 42.37 29.38 49.40 144.51 129.50 21.65 4.69 61.72 20.31 26.75 92.43 64.67 22.30 57.45 116.80 27.09 11.75 22 ER3c ExonRegion 1 10.84 45.52 66.62 45.22 20.76 50.27 37.37 44.96 51.48 121.40 137.42 31.69 19.33 151.19 98.34 93.23 114.80 112.07 110.46 95.51 121.06 93.54 73.68 23 E3c_E4a KnownJunction 0 2.96 11.97 106.56 103.15 19.10 45.83 21.86 104.16 119.15 232.54 192.63 44.11 61.52 222.56 137.83 193.20 170.64 328.68 252.62 183.12 168.41 214.01 152.46 24 E3c_E4b KnownJunction 0 3.33 3.35 0.00 0.00 0.00 0.00 2.25 1.89 0.00 1.13 2.37 0.00 0.00 7.77 4.45 3.67 4.21 13.39 0.00 0.00 0.00 3.12 3.59 25 ER4a ExonRegion 0 32.20 49.75 122.73 98.14 35.14 80.56 40.17 114.52 111.01 216.72 319.29 94.94 80.93 283.95 172.53 167.77 232.06 324.19 229.51 177.37 205.01 158.22 152.25 26 E4_Ab KnownBoundary 0 27.34 55.19 199.11 159.72 81.07 140.15 61.39 154.15 121.30 231.20 332.35 92.13 143.01 372.77 209.41 146.12 225.25 327.81 177.61 124.70 166.98 158.35 151.86 27 ER4b ExonRegion 0 10.40 30.77 137.17 110.21 23.29 57.33 31.87 110.95 86.11 188.94 223.42 58.51 69.87 180.06 94.85 95.81 163.83 287.90 113.31 96.15 123.70 96.49 85.55 28 E4a_E5a KnownJunction 0 20.52 38.41 147.95 127.72 19.78 62.69 47.87 123.59 96.18 222.85 188.10 116.74 79.70 162.75 103.96 123.13 216.74 344.02 142.87 126.30 172.54 125.16 87.92 29 ER5a ExonRegion 0 9.16 28.23 92.52 85.38 17.21 60.98 27.07 85.01 67.37 153.95 159.89 73.22 85.22 166.09 102.04 99.53 135.67 237.67 116.45 100.43 94.19 100.71 93.75 30 E5b_E6a KnownJunction 1 10.74 45.39 101.59 81.84 15.96 39.07 12.06 67.36 53.65 132.83 162.15 49.67 40.09 83.17 29.67 40.59 161.48 140.78 66.64 99.90 112.00 45.31 50.28 31 E5b_E7a NovelJunction 0 0.00 0.00 6.24 0.00 3.90 4.37 0.00 12.90 14.67 1.34 24.22 0.00 6.33 4.94 0.00 4.10 18.42 28.44 21.74 8.25 11.43 3.06 0.00 32 ER5b ExonRegion 1 4.23 26.44 79.65 59.97 8.03 29.34 13.24 58.77 53.11 113.54 139.17 25.98 46.90 76.33 26.11 41.61 132.04 127.49 63.71 76.60 96.96 39.59 52.86 33 ER6a ExonRegion 0 9.02 38.44 54.51 42.60 10.64 49.61 23.03 52.38 53.34 109.47 120.67 45.73 56.36 110.63 56.74 59.81 101.73 126.42 88.57 66.48 92.64 66.15 50.22 34 E6a_E7a KnownJunction 0 38.38 70.65 107.36 68.89 12.65 98.30 63.11 122.52 106.94 232.92 231.32 123.79 110.22 242.22 137.71 115.61 236.28 228.49 230.50 107.96 194.23 90.32 75.20 35 I6 Intron 0 15.66 17.31 14.86 28.23 14.99 13.47 14.27 20.15 14.79 25.74 18.18 13.30 7.70 23.98 17.41 16.65 22.50 26.31 29.97 23.17 13.62 23.56 14.43 36 I6_AR1 ActiveIntronRegion 0 17.77 19.16 15.62 32.88 16.18 14.80 16.00 22.91 15.61 26.73 20.02 15.75 9.01 26.12 18.98 17.40 25.06 28.88 32.59 25.13 14.91 25.72 15.54 37 E7_Aa NovelBoundary 0 36.82 25.65 25.22 62.76 35.40 41.40 23.89 42.80 29.60 40.83 31.96 31.06 19.15 26.66 34.12 8.12 32.63 62.84 36.24 19.56 13.65 11.76 28.00 38 ER7a ExonRegion 1 33.34 32.00 108.12 62.96 25.67 74.67 31.87 98.78 95.69 201.10 216.71 59.31 63.08 126.29 60.37 65.22 167.33 188.93 101.66 95.27 165.97 68.22 51.22 39 E7a_E8b KnownJunction 0 37.56 49.86 172.85 128.56 61.55 106.87 34.98 157.11 142.88 298.87 350.56 173.31 208.59 364.06 166.51 199.52 232.44 394.88 323.40 159.15 265.52 224.30 135.30 40 E8_Aa NovelBoundary 1 40.23 37.62 25.16 32.43 15.20 21.64 21.11 31.67 13.95 34.89 16.27 19.21 46.75 23.49 15.45 24.10 40.11 27.86 35.77 38.22 2.84 27.86 19.21 41 ER8a ExonRegion 0 16.44 11.95 22.82 16.74 17.02 26.32 19.42 22.53 13.95 22.39 12.31 19.22 24.32 29.54 15.16 22.02 22.84 42.68 28.74 15.71 13.50 13.03 14.77 42 E8_Ab KnownBoundary 1 19.93 26.44 34.71 18.08 37.95 13.23 8.21 6.98 10.91 31.67 12.16 23.26 39.93 36.97 14.09 23.58 35.72 63.84 42.82 11.76 10.87 11.08 32.44 43 ER8b ExonRegion 0 35.77 33.07 135.48 96.38 25.58 62.46 23.49 121.20 106.57 237.98 170.21 68.93 119.22 292.02 154.93 151.40 146.23 349.67 229.60 107.40 128.43 133.22 120.17 44 E8_Ac KnownBoundary 0 21.78 8.62 33.20 32.83 0.00 7.95 9.49 41.73 41.23 76.83 14.90 6.15 12.50 75.64 13.97 44.52 12.72 125.11 46.50 40.27 15.63 18.43 26.29 45 E8_Ad KnownBoundary 0 6.22 5.72 34.77 41.89 6.71 7.78 3.89 33.72 37.04 86.87 30.32 0.00 6.49 12.60 17.18 21.96 36.28 88.13 20.33 23.14 38.73 8.33 11.61 46 ER8c ExonRegion 1 23.28 18.30 118.86 76.32 2.68 34.84 11.92 96.79 104.98 219.06 94.71 4.33 56.28 160.79 66.73 80.25 85.82 256.84 108.30 100.00 83.74 52.09 41.11 47 ER8d ExonRegion 1 15.21 21.80 97.11 65.25 8.45 39.89 11.34 90.58 91.59 203.90 131.98 17.72 47.19 81.46 42.97 50.90 106.25 204.64 53.06 94.95 122.03 29.69 21.84 48 E8a_E9a KnownJunction 1 21.41 50.65 158.81 114.24 23.09 57.86 16.56 123.80 124.16 267.60 208.05 36.91 62.98 81.76 30.78 48.19 148.11 300.08 57.23 127.07 162.47 13.90 41.91 49 ER9a ExonRegion 0 21.55 48.09 95.20 75.66 25.40 78.44 45.62 77.56 78.53 185.64 154.17 58.97 73.22 157.44 84.11 69.13 105.71 192.15 111.13 97.56 133.69 78.06 70.83 50 E9a_E10a KnownJunction 0 44.97 84.06 158.60 117.67 114.69 221.58 119.99 116.73 141.61 260.75 325.50 160.40 161.03 412.45 172.45 160.81 217.67 344.77 317.47 195.59 245.01 123.20 133.85 51 ER10a ExonRegion 0 33.67 75.36 129.63 123.85 57.32 129.70 65.73 111.47 85.86 212.72 221.00 65.10 130.02 241.24 135.32 148.69 158.41 332.14 151.43 129.93 153.26 120.41 134.08 52 E10a_E11a KnownJunction 0 59.57 116.03 233.70 264.17 64.60 106.08 66.55 169.88 139.15 327.37 468.70 136.09 182.29 380.31 257.37 204.99 261.43 398.49 262.03 190.35 243.34 173.90 221.86 53 ER11a ExonRegion 0 142.62 197.50 241.28 275.19 160.83 193.42 138.05 179.60 111.25 213.41 294.46 111.33 128.94 306.21 285.71 191.28 206.65 265.58 252.70 178.81 161.33 195.56 177.77 54 ER11b ExonRegion 0 0.00 0.00 0.00 0.00 8.03 1.83 0.00 0.00 0.00 2.29 1.93 0.00 0.00 0.00 0.00 0.00 0.00 1.85 0.00 2.13 0.00 0.00 8.81