Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SHC1 Gene 0 244.18 97.42 219.16 590.02 275.24 832.33 348.15 280.52 472.48 335.22 195.33 51.01 55.67 124.43 98.67 108.91 73.42 64.58 463.56 225.00 1126.26 674.01 633.29 2 368441 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 3 368443 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 366442 Transcript 0 20.19 10.91 15.80 12.46 15.96 13.39 13.77 15.09 19.26 19.50 20.35 12.29 9.76 12.00 14.68 22.27 20.70 20.29 15.52 16.26 36.75 13.68 26.17 5 368450 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 368453 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 412170 Transcript 0 0.00 0.00 1.23 0.00 0.00 1.83 0.00 0.00 3.71 1.15 0.00 8.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 0.00 0.00 8 448116 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 368449 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 368445 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 11 368447 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 12 414115 Transcript 0 0.00 3.46 0.00 6.13 2.01 15.95 12.64 2.07 4.45 4.76 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.37 6.37 5.96 0.00 0.00 0.00 13 444179 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 14 444664 Transcript 0 91.93 22.13 44.07 254.33 104.56 381.68 124.32 79.63 216.63 68.67 45.22 26.00 39.85 26.43 33.32 32.21 15.28 19.43 81.82 73.41 111.11 93.95 85.31 15 490667 Transcript 0 7.19 3.03 8.54 69.75 0.00 101.08 20.31 8.46 67.97 3.33 6.74 12.30 0.00 2.18 0.00 0.00 0.00 8.37 43.77 0.00 46.09 34.35 41.91 16 ER1a ExonRegion 0 7.42 1.26 0.96 1.64 5.41 2.08 1.35 0.04 0.89 1.95 9.32 1.41 0.05 11.81 4.82 14.39 7.53 4.38 2.61 2.20 8.81 2.81 8.71 17 E1_Ab KnownBoundary 0 3.19 0.00 2.90 3.63 11.29 2.44 4.06 0.00 3.53 1.67 19.00 6.30 0.00 14.95 10.51 31.19 17.02 7.09 4.14 5.69 19.34 9.25 23.13 18 E1_Ac KnownBoundary 0 46.67 9.14 4.61 5.13 21.56 20.56 28.48 4.56 4.48 17.06 49.70 0.00 6.82 58.04 66.14 113.47 46.00 18.28 46.50 28.38 46.33 43.66 97.57 19 ER1b ExonRegion 0 25.18 5.24 4.64 6.53 21.12 13.42 18.95 1.82 5.40 18.53 47.71 2.96 5.43 45.82 45.05 90.42 43.26 19.94 33.53 19.26 43.38 37.94 68.01 20 ER1c ExonRegion 1 59.10 7.32 4.38 7.33 34.32 58.45 25.49 5.32 14.36 25.23 82.87 0.00 9.38 141.91 91.75 141.47 60.49 20.97 42.60 19.95 91.23 107.25 136.85 21 E1_Ad KnownBoundary 0 121.43 3.03 8.46 7.92 61.71 102.95 38.77 12.82 25.55 24.39 101.13 11.10 25.16 176.76 175.78 171.58 68.07 35.24 49.60 11.06 148.95 164.78 246.96 22 ER1d ExonRegion 1 47.31 2.84 14.69 9.51 17.79 25.07 13.66 14.36 23.80 30.41 80.13 3.54 21.21 61.20 50.24 66.30 56.98 11.70 27.00 8.85 127.66 87.51 105.82 23 E1a_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.61 0.00 2.34 0.00 4.19 14.85 0.00 0.00 2.41 0.00 4.36 7.95 2.11 0.00 0.00 18.04 4.84 8.45 24 E1a_E3d KnownJunction 0 0.00 6.12 3.13 2.06 0.00 0.00 0.00 4.52 10.94 18.21 70.75 5.85 19.97 39.50 14.09 19.48 43.76 8.54 8.00 8.05 40.09 11.94 20.15 25 I1_SR1 SilentIntronRegion 1 2.81 3.71 0.83 1.01 3.49 0.00 0.58 2.67 3.97 2.14 8.74 5.46 4.28 5.93 28.19 5.88 5.09 0.00 9.21 2.17 2.16 4.08 12.32 26 ER2a ExonRegion 0 54.42 32.73 47.40 37.38 39.22 29.33 41.31 42.94 57.79 52.95 28.66 31.17 29.29 23.34 35.02 58.09 46.30 56.38 46.57 48.78 47.97 33.07 61.86 27 E2_Da NovelBoundary 0 134.99 0.00 1.54 5.86 0.00 2.61 3.62 10.60 9.03 6.21 10.42 6.15 0.00 7.36 21.14 26.49 4.49 6.30 14.21 2.62 11.55 13.66 22.45 28 E2a_E3d KnownJunction 0 6.15 0.00 0.00 0.00 8.66 8.23 0.00 0.00 0.00 1.37 17.53 5.70 0.00 10.24 9.02 4.36 7.85 2.36 0.00 0.00 44.23 3.12 8.19 29 ER3a ExonRegion 0 3.33 0.58 1.23 4.09 3.06 29.34 19.86 5.43 6.35 4.10 5.52 0.00 0.00 1.62 0.00 0.00 5.19 4.75 75.99 6.99 35.26 16.37 31.46 30 ER3b ExonRegion 1 50.96 24.72 57.90 215.95 73.85 462.57 147.58 90.57 198.61 157.32 90.21 2.19 0.74 7.40 12.99 28.86 15.64 42.20 1054.94 131.39 933.24 514.53 943.86 31 E3_Da KnownBoundary 1 62.23 3.16 93.94 339.62 69.10 238.84 60.86 183.85 344.64 208.26 84.50 0.00 0.00 11.95 4.45 57.08 12.90 93.52 614.51 179.80 845.55 384.12 1251.94 32 E3a_E6b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 33 ER3c ExonRegion 1 28.35 27.70 70.42 141.92 149.92 863.64 254.04 85.62 200.66 162.57 65.90 3.12 0.00 9.25 6.96 20.40 6.67 33.31 259.17 137.75 789.35 265.99 377.76 34 E3_Ac KnownBoundary 1 78.61 79.59 71.05 136.35 89.56 457.18 198.11 113.69 237.01 177.85 92.55 0.00 0.00 6.95 14.09 4.02 4.77 25.91 228.43 153.59 948.90 248.61 277.43 35 ER3d ExonRegion 1 89.13 33.82 65.52 140.91 42.30 248.60 93.72 82.90 205.72 186.65 75.77 2.28 4.62 6.83 7.11 9.64 8.39 24.60 192.99 138.99 906.62 283.79 274.06 36 E3_Ad KnownBoundary 0 108.91 51.11 89.15 214.69 57.81 363.14 116.85 112.50 277.31 212.56 49.07 0.00 0.00 4.65 9.39 8.63 9.07 32.58 238.03 177.63 1060.41 316.15 285.28 37 ER3e ExonRegion 0 103.48 56.61 90.72 206.54 102.06 560.79 181.36 143.87 296.44 245.36 172.13 17.68 27.04 108.25 77.71 99.36 75.13 57.50 297.63 180.19 1210.31 465.40 495.41 38 E3b_E4a KnownJunction 0 168.25 68.08 180.06 425.92 223.26 839.74 275.80 262.75 507.17 387.05 233.69 50.42 62.01 102.42 81.22 128.00 88.17 104.01 506.84 323.42 1464.43 733.15 794.39 39 ER4a ExonRegion 1 126.45 49.15 162.16 453.48 174.19 698.44 215.23 255.18 543.29 402.19 272.73 38.90 32.10 119.06 109.10 119.47 87.26 106.23 561.25 288.64 1502.37 769.79 823.62 40 E4a_E5c KnownJunction 0 159.95 86.23 200.29 576.08 189.05 772.40 237.51 271.09 640.24 403.44 261.80 66.92 66.39 178.70 131.41 144.66 116.97 105.37 723.41 285.97 1507.12 1080.16 1012.66 41 ER5a ExonRegion 0 0.00 3.46 0.00 6.13 2.01 15.95 12.64 2.07 4.45 4.76 0.00 0.00 0.00 0.32 0.00 0.00 0.00 0.37 6.37 5.96 0.00 0.00 0.00 42 ER5b ExonRegion 0 2.86 17.95 4.53 31.82 16.32 105.12 74.90 14.91 34.68 32.34 6.57 6.06 0.94 7.84 4.42 3.05 3.88 7.67 43.64 29.36 40.49 26.04 29.73 43 E5_Ac KnownBoundary 0 3.78 11.25 1.71 31.10 23.60 82.62 87.18 14.29 31.22 32.83 0.00 0.00 0.00 0.00 4.45 0.00 4.02 7.25 19.29 16.81 0.00 0.00 13.06 44 ER5c ExonRegion 0 124.37 95.29 195.94 553.29 131.03 876.70 301.02 309.94 609.97 453.45 301.35 52.98 45.49 163.39 92.61 123.98 112.49 95.23 504.65 344.95 1593.35 890.65 833.17 45 E5a_E6a KnownJunction 0 194.33 68.34 248.39 651.13 118.25 1079.21 366.37 387.49 649.62 541.62 292.60 36.91 45.78 179.94 121.27 153.63 91.91 90.78 510.41 353.27 1890.63 991.55 913.30 46 E6_Ab NovelBoundary 0 175.88 63.94 173.53 559.14 132.60 719.98 344.20 322.97 569.99 468.98 190.42 42.61 38.63 155.04 85.42 145.86 67.41 75.69 449.61 271.39 1436.82 693.47 623.32 47 ER6a ExonRegion 0 163.48 66.53 208.31 615.76 119.39 924.76 345.36 394.50 653.43 545.98 273.18 63.50 49.80 188.71 111.91 168.56 93.84 92.56 503.44 327.15 1860.98 909.80 827.71 48 ER6b ExonRegion 0 264.66 82.78 248.59 717.31 196.64 1110.15 380.44 407.43 751.18 555.24 326.37 82.54 82.33 177.89 145.63 152.61 149.37 98.39 749.46 391.97 1831.57 1045.61 957.60 49 E6_Da NovelBoundary 0 127.58 42.43 129.53 399.25 38.71 510.05 170.91 173.33 331.54 261.88 107.29 16.66 29.87 32.84 18.17 54.17 38.80 37.97 416.48 176.54 621.29 513.20 351.70 50 E6b_E7a KnownJunction 0 362.58 99.19 242.90 616.87 186.08 1021.29 342.48 299.51 614.37 492.22 290.76 73.22 45.45 168.17 130.17 203.11 96.87 86.55 1029.11 367.97 1615.91 1312.85 1057.39 51 E6b_E8a KnownJunction 0 12.82 35.59 33.44 190.82 38.29 285.12 136.55 102.81 243.89 107.74 9.27 0.00 13.15 14.30 17.92 10.85 11.97 20.44 39.53 98.18 27.24 19.84 11.10 52 ER6c ExonRegion 0 273.94 104.58 277.81 765.55 189.98 1157.13 400.03 412.11 805.65 578.37 309.26 78.55 59.63 196.75 141.33 174.08 126.85 77.61 928.76 423.10 1676.08 1198.32 945.60 53 ER7a ExonRegion 0 234.85 72.68 241.15 575.09 177.49 813.36 308.21 333.43 621.33 494.63 319.97 91.88 47.60 170.26 122.93 153.95 116.33 62.62 681.55 373.68 2047.74 1052.02 790.88 54 E7a_E8a KnownJunction 1 283.09 93.27 242.98 650.80 206.79 1149.74 433.32 361.21 605.03 470.86 359.83 92.73 39.77 168.11 157.49 200.55 128.10 73.00 547.69 387.47 2413.83 1000.43 785.85 55 ER8a ExonRegion 0 289.19 118.65 266.42 725.61 280.59 1298.36 474.11 406.59 770.76 573.72 436.20 66.44 70.80 207.89 154.21 181.19 157.62 93.99 776.92 431.01 2419.72 1100.18 977.17 56 E8a_E9a KnownJunction 0 315.69 130.31 252.24 676.70 345.08 1136.90 504.69 372.09 677.51 492.97 365.78 84.93 85.22 212.79 128.07 134.41 127.44 112.42 921.72 370.66 2285.14 1104.22 994.65 57 ER9a ExonRegion 0 227.27 113.45 318.55 856.81 330.13 1230.91 470.46 513.50 938.49 637.61 428.31 101.96 101.63 235.06 153.24 195.86 152.67 143.24 924.96 419.03 2466.70 1207.15 1260.91 58 E9a_E10a KnownJunction 0 227.74 114.19 360.78 1025.11 336.59 1064.27 389.96 575.86 954.53 695.59 410.42 86.28 106.49 194.13 149.08 154.15 87.61 120.84 592.49 373.34 2241.41 1140.11 969.72 59 ER9b ExonRegion 0 0.00 0.00 1.23 0.00 0.00 1.83 0.00 0.00 3.71 1.15 0.00 8.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.20 0.00 0.00 60 E10_Ab NovelBoundary 0 198.92 103.93 329.82 817.35 304.67 1070.80 408.02 569.33 905.00 662.79 443.95 86.73 83.60 172.94 150.81 150.73 93.97 166.27 912.03 409.96 2359.46 933.08 1015.22 61 ER10a ExonRegion 0 166.45 94.78 299.56 862.85 264.04 935.76 350.85 533.54 869.39 643.74 432.07 79.79 71.52 193.85 135.01 147.86 94.43 140.17 745.60 380.32 2381.27 999.35 938.47 62 ER10b ExonRegion 0 198.69 71.18 263.40 663.22 290.05 1015.25 433.85 395.26 736.45 549.00 360.53 77.86 85.72 226.05 126.54 184.50 164.28 150.92 943.55 350.24 2043.31 1018.10 1173.89 63 E10_Da KnownBoundary 0 217.89 87.35 291.27 636.92 349.58 1001.30 457.75 335.53 683.85 462.59 277.81 41.71 55.84 195.42 114.96 161.67 124.64 80.71 750.70 274.78 1622.34 1074.59 1084.97 64 ER10c ExonRegion 0 209.73 100.26 251.40 546.63 278.20 911.99 358.43 332.87 635.06 449.39 274.47 36.96 44.69 193.22 133.35 157.07 104.45 65.25 581.87 314.37 1702.95 1062.67 991.37 65 E10b_E11a KnownJunction 0 248.19 129.91 308.89 677.87 244.74 891.99 378.92 522.79 712.38 565.55 287.44 31.21 48.05 194.66 107.30 138.77 69.28 78.80 580.16 378.65 1527.94 792.06 843.64 66 ER11a ExonRegion 1 280.50 89.80 276.18 644.00 278.77 916.98 372.18 406.21 669.59 518.42 346.62 49.36 31.83 221.69 116.55 145.12 115.96 68.13 706.20 314.16 1814.38 969.34 854.23 67 E11a_E12a KnownJunction 0 381.25 101.36 188.05 435.64 335.82 1056.61 385.23 280.82 446.18 334.70 248.01 31.06 33.44 138.38 95.56 114.93 83.68 79.96 581.19 251.51 1420.63 735.54 688.88 68 E11a_E12b KnownJunction 1 188.92 29.07 96.66 330.16 151.02 429.07 226.38 133.53 274.85 223.97 146.19 12.30 6.82 95.65 52.78 79.21 67.51 23.59 408.01 129.50 764.37 404.94 404.54 69 ER12a ExonRegion 0 290.49 72.19 185.03 425.56 292.99 887.10 334.30 276.98 453.60 351.81 253.21 34.64 32.83 144.55 98.64 128.54 94.08 74.37 559.83 242.02 1490.81 722.98 741.50 70 ER12b ExonRegion 0 306.92 75.65 230.15 542.56 264.27 976.77 397.13 309.47 590.21 447.62 287.07 52.36 45.74 200.86 140.52 157.42 105.82 109.84 566.81 328.99 1636.47 803.41 865.17 71 E12_Da KnownBoundary 1 404.07 119.85 282.31 629.52 373.85 1037.07 416.94 364.74 661.28 461.94 264.91 18.16 39.12 192.71 96.79 176.45 80.88 125.65 466.27 395.26 1547.96 823.65 975.70 72 ER12c ExonRegion 0 267.19 104.64 218.33 563.29 286.89 833.30 357.70 307.44 576.80 423.61 273.76 49.04 49.96 216.89 131.82 152.16 75.78 93.15 449.76 323.63 1728.00 824.76 877.23 73 E12b_E13a KnownJunction 1 401.55 131.62 222.82 717.03 323.26 822.31 401.70 334.42 567.27 459.12 296.81 49.82 28.08 245.22 222.63 158.33 106.59 83.82 547.12 329.43 1822.68 894.13 972.63 74 E13_Ab NovelBoundary 0 182.70 85.58 140.62 407.51 122.33 568.93 261.35 162.41 312.79 278.10 90.65 24.61 20.29 150.63 119.54 95.19 59.47 23.96 302.22 266.22 1020.99 639.77 538.47 75 ER13a ExonRegion 1 264.25 106.56 181.85 541.81 206.70 769.19 316.23 247.77 490.53 383.87 233.49 50.65 26.97 231.44 204.25 145.93 100.84 57.56 479.08 325.32 1641.32 866.95 854.12 76 ER13b ExonRegion 1 187.77 83.18 232.89 574.12 228.48 880.28 300.46 258.57 525.46 379.24 256.71 55.16 30.47 226.20 139.92 167.28 101.63 79.98 462.76 304.70 1599.48 819.20 812.42 77 E13_Da KnownBoundary 1 315.69 124.52 321.72 790.97 332.51 911.18 402.90 357.10 657.49 532.24 343.35 23.56 59.57 235.04 153.16 268.39 133.99 130.99 594.37 361.90 2116.12 913.42 1033.15 78 E13a_E14b KnownJunction 0 7.19 3.03 8.54 69.75 0.00 101.08 20.31 8.46 67.97 3.33 6.74 12.30 0.00 2.18 0.00 0.00 0.00 8.37 43.77 0.00 46.09 34.35 41.91 79 ER13c ExonRegion 0 320.26 100.45 292.53 874.57 310.86 817.65 353.58 398.41 657.58 518.17 342.71 58.99 58.82 214.74 183.93 240.68 123.03 131.09 653.80 362.17 1981.30 1151.23 1027.55 80 E13b_E14a KnownJunction 0 7.11 0.00 0.00 13.88 0.00 12.49 6.27 5.09 11.23 12.06 6.95 0.00 0.00 0.00 0.00 3.42 0.00 2.57 11.67 0.00 26.75 7.59 11.87 81 E13b_E14b KnownJunction 1 544.99 123.07 369.71 987.45 503.99 1053.71 564.75 466.19 753.75 578.28 486.33 30.61 33.28 272.94 188.02 271.13 131.84 123.82 708.54 464.04 2255.80 1160.37 1094.10 82 E14_Aa NovelBoundary 0 171.51 197.00 235.30 340.32 194.23 630.60 403.38 225.33 209.89 192.73 39.59 66.17 63.47 28.31 15.08 155.43 110.05 257.96 168.95 204.15 148.95 100.85 124.80 83 ER14a ExonRegion 0 38.83 20.46 32.72 180.73 72.62 264.31 91.90 71.76 153.21 66.88 33.03 15.21 16.37 19.15 27.62 27.22 10.79 13.44 66.23 51.45 100.65 75.60 69.91 84 E14_Da KnownBoundary 0 267.23 46.24 49.05 291.80 187.10 831.11 275.97 111.35 272.28 106.83 55.86 31.96 43.50 22.60 28.31 39.65 12.90 21.10 137.42 128.98 179.09 143.04 139.23 85 ER14b ExonRegion 0 91.93 22.13 44.07 254.33 104.56 381.68 124.32 79.63 216.63 68.67 45.22 26.00 39.85 26.43 33.32 32.21 15.28 19.43 81.82 73.41 111.11 93.95 85.31 86 E14_Ab KnownBoundary 1 37.56 26.57 53.25 239.43 59.17 391.31 94.38 83.34 191.03 73.87 24.32 25.21 60.55 33.02 27.44 22.30 8.98 10.40 51.58 87.37 92.23 36.25 55.66 87 ER14c ExonRegion 0 444.33 153.27 270.14 895.83 363.28 1582.03 646.73 384.81 721.55 497.89 312.75 69.58 94.10 194.67 152.81 172.79 103.34 119.38 550.49 351.48 1643.89 1007.92 853.06 88 E14_Db KnownBoundary 0 238.93 102.35 208.36 897.95 369.27 1511.18 589.97 301.61 505.06 293.49 109.76 94.53 148.04 197.78 196.55 128.00 49.65 101.73 459.78 265.45 437.45 1095.83 912.87 89 ER14d ExonRegion 0 457.53 149.58 339.25 924.89 420.72 1579.59 600.06 502.44 782.67 560.56 294.28 114.37 162.55 243.24 173.44 228.48 128.15 106.08 789.65 287.04 1809.69 1165.60 1216.10 90 E14_Dc KnownBoundary 0 626.33 154.84 281.81 778.26 820.71 1618.05 752.00 457.65 756.99 494.07 334.30 135.94 157.29 170.23 145.37 159.96 121.08 82.87 1012.36 331.54 1773.81 1075.63 966.99 91 ER14e ExonRegion 0 443.24 191.04 411.75 1061.38 567.44 1098.25 562.81 430.12 606.05 411.67 203.40 74.24 74.83 135.78 129.48 99.62 73.41 52.00 437.17 261.26 1025.21 836.98 582.11 92 ER14f ExonRegion 0 8.47 0.00 0.00 6.81 5.35 16.50 10.59 0.00 4.94 3.44 0.00 0.00 4.69 4.87 0.00 0.00 3.30 0.00 6.37 0.00 6.61 4.17 8.81