Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C1orf77 Gene 0 162.09 232.36 129.35 208.44 159.52 122.54 132.55 140.51 91.06 119.69 161.42 104.53 69.79 152.99 154.29 130.31 137.03 162.13 91.66 163.86 60.04 112.97 82.27 2 368694 Transcript 0 20.17 17.53 4.80 5.79 3.83 19.96 7.79 7.51 2.64 2.57 12.31 4.33 0.00 2.45 5.41 4.88 12.47 3.20 0.77 8.40 9.92 1.66 2.72 3 419466 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 495554 Transcript 0 22.67 2.50 7.07 0.00 0.00 2.84 0.00 9.45 5.56 1.13 2.42 0.00 0.00 2.94 8.90 7.52 0.00 8.37 0.00 3.20 6.24 11.08 8.19 5 403433 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 392618 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 368690 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 368687 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 368686 Transcript 0 103.78 164.18 56.25 113.00 132.42 83.66 103.56 117.56 72.38 74.16 68.80 88.67 59.69 42.52 34.15 55.69 56.58 76.51 52.75 125.27 21.62 102.10 52.12 10 ER1a ExonRegion 0 15.99 17.77 4.08 1.36 2.97 26.62 11.28 2.05 3.11 1.70 24.63 0.00 0.00 4.09 4.30 6.05 24.94 1.78 1.53 8.83 19.83 1.23 5.44 11 ER1b ExonRegion 1 58.42 76.06 19.85 12.54 19.80 126.90 58.78 16.59 7.41 9.40 63.01 0.00 0.00 43.20 22.63 63.60 85.82 34.37 21.66 53.19 65.23 25.00 49.34 12 ER1c ExonRegion 1 88.39 168.30 99.64 98.98 50.69 159.69 116.92 70.26 65.07 106.29 328.59 31.24 43.16 237.23 288.48 207.74 306.96 276.40 92.16 201.19 170.51 107.76 155.15 13 E1a_E2a KnownJunction 0 16.97 180.95 170.57 275.66 58.40 66.84 56.79 125.85 85.68 169.07 283.70 87.78 118.99 288.89 328.20 437.66 221.22 675.57 210.17 284.62 136.40 130.73 255.58 14 E2_Ab NovelBoundary 1 32.52 119.91 121.70 187.56 116.89 119.19 75.21 79.60 62.30 103.93 197.26 44.71 39.45 180.18 174.79 176.53 103.88 291.54 80.47 167.78 73.95 69.07 82.80 15 ER2a ExonRegion 1 24.93 161.56 152.35 239.79 90.38 105.65 69.80 115.81 87.14 147.06 305.83 74.32 102.14 280.70 299.31 362.10 208.14 543.55 150.77 250.24 130.02 126.75 190.72 16 ER2b ExonRegion 1 45.34 168.34 216.89 268.32 261.22 404.27 253.60 176.92 122.84 181.84 423.06 97.35 87.28 355.05 281.92 237.54 259.28 381.91 132.79 250.70 129.16 146.60 127.10 17 E2_Da KnownBoundary 0 10.52 35.32 56.86 77.31 114.69 114.37 105.73 56.52 32.32 44.40 79.02 25.66 7.95 90.41 47.47 57.08 54.89 141.56 24.85 61.36 36.08 80.09 54.12 18 E2a_E2d KnownJunction 0 67.05 219.70 271.58 270.73 310.95 670.01 492.02 207.51 122.94 202.49 398.52 155.15 81.81 417.98 370.23 229.60 311.73 223.81 179.11 235.79 119.42 126.63 105.00 19 ER2c ExonRegion 0 75.22 113.81 57.99 129.44 112.98 67.71 69.64 73.01 53.95 74.74 95.32 90.91 57.09 105.04 66.79 90.54 83.82 109.03 43.37 86.20 36.67 101.12 71.14 20 E2_Ac KnownBoundary 0 163.95 188.45 122.94 242.59 139.30 108.69 106.92 95.05 70.89 93.26 138.61 146.60 116.06 124.49 76.52 98.18 130.43 121.13 29.65 130.71 62.46 116.22 103.12 21 ER2d ExonRegion 0 159.14 217.74 107.69 228.42 167.76 73.01 101.54 109.14 66.54 97.12 128.94 161.98 144.12 125.83 87.60 109.41 124.25 124.51 52.96 111.28 54.28 101.38 88.42 22 E2_Ad KnownBoundary 1 278.05 217.20 106.86 209.50 233.28 102.33 147.99 104.37 66.69 109.30 77.23 259.73 143.82 122.02 132.15 95.96 127.63 101.69 41.41 145.99 41.27 99.38 78.11 23 ER2e ExonRegion 0 231.11 463.09 323.34 436.91 297.86 450.65 336.57 270.23 173.39 287.56 397.07 339.91 208.16 500.16 470.50 290.95 396.60 338.49 184.14 349.03 179.02 207.11 160.20 24 E2_Ae KnownBoundary 0 397.63 650.54 320.83 459.12 227.93 218.06 238.83 275.24 152.98 270.42 455.17 272.04 180.99 481.25 548.49 337.69 400.00 395.30 228.99 373.21 234.69 202.99 209.22 25 ER2f ExonRegion 0 302.18 394.97 274.55 374.45 168.14 180.28 157.31 214.61 151.21 253.91 471.30 197.56 169.24 474.69 410.09 289.03 395.80 399.46 180.42 291.15 173.47 185.04 180.10 26 E2_Db NovelBoundary 1 7.48 49.07 15.88 38.52 28.86 51.56 59.13 32.12 31.08 21.60 27.48 25.06 58.28 67.99 17.80 32.30 30.01 39.46 7.72 30.68 13.96 39.56 15.11 27 E2b_E3a KnownJunction 1 156.62 168.13 148.69 131.35 80.98 63.83 89.56 104.12 62.88 119.97 201.16 36.91 45.45 299.37 177.51 203.71 183.82 185.17 84.90 134.80 104.28 68.03 66.84 28 E2b_E3b KnownJunction 0 142.17 225.29 117.50 178.53 77.08 81.60 65.89 76.97 58.80 101.89 168.62 78.03 28.41 213.49 176.53 96.98 126.04 163.91 95.53 171.81 82.16 78.75 68.97 29 E2b_E4a KnownJunction 0 22.67 2.50 7.07 0.00 0.00 2.84 0.00 9.45 5.56 1.13 2.42 0.00 0.00 2.94 8.90 7.52 0.00 8.37 0.00 3.20 6.24 11.08 8.19 30 I2 Intron 0 54.08 50.05 22.74 78.46 88.79 61.27 57.76 48.59 48.46 44.32 68.64 82.64 62.08 61.90 28.20 61.43 55.98 64.35 35.12 72.30 26.23 62.50 51.03 31 I2_AR1 ActiveIntronRegion 0 11.38 24.05 17.01 54.33 54.00 33.29 28.15 29.84 30.11 20.41 34.63 41.89 46.61 49.12 20.16 39.05 35.48 38.12 27.77 34.06 9.21 50.02 32.97 32 I2_SR1 SilentIntronRegion 0 16.70 20.30 14.01 56.84 172.15 133.47 115.25 40.13 41.35 40.34 61.99 90.16 59.08 83.02 36.07 88.25 49.01 74.56 32.12 64.80 30.16 68.17 70.71 33 I2_AR2 ActiveIntronRegion 1 10.64 13.91 12.45 51.32 35.56 40.30 28.57 46.08 58.77 44.55 52.90 71.89 55.79 66.72 20.92 47.08 49.95 38.71 11.23 55.77 38.85 41.34 42.81 34 I2_SR2 SilentIntronRegion 1 32.42 24.26 13.98 39.51 96.50 85.25 72.05 28.56 41.62 33.17 56.96 75.99 60.58 64.50 23.94 57.27 46.25 72.65 36.26 60.56 30.69 51.80 48.64 35 I2_AR3 ActiveIntronRegion 0 77.52 68.36 27.70 101.86 88.10 56.07 57.80 62.11 58.09 56.42 84.62 97.55 71.78 61.29 30.84 64.79 67.58 65.38 37.30 90.25 27.92 71.33 52.44 36 I2_SR3 SilentIntronRegion 1 92.36 82.16 33.39 77.49 85.48 40.54 41.31 47.33 41.62 41.63 71.70 82.73 29.48 72.35 31.96 80.52 49.62 111.72 47.05 71.44 44.46 46.09 78.50 37 E3_Ab NovelBoundary 0 37.86 8.62 18.39 17.38 15.79 49.23 20.89 16.80 24.07 27.80 31.69 0.00 6.17 9.89 10.14 33.15 13.46 36.27 17.79 14.96 13.47 24.37 11.61 38 ER3a ExonRegion 0 182.55 231.32 171.25 178.88 100.34 83.90 95.99 115.37 84.30 145.66 286.07 103.91 65.66 369.08 218.32 238.51 234.36 235.59 120.25 173.40 151.51 113.55 101.31 39 ER3b ExonRegion 0 230.12 311.52 260.29 281.48 211.22 164.91 165.23 170.63 133.82 227.39 368.94 175.50 104.67 503.40 409.24 329.26 342.84 461.19 204.94 312.47 188.83 170.06 167.40 40 E3_Da KnownBoundary 0 61.05 31.57 14.75 26.74 65.87 15.90 53.04 31.79 50.49 46.39 23.90 18.01 6.17 42.32 8.90 16.75 30.67 58.99 49.88 76.00 35.77 39.25 15.96 41 E3a_E3c KnownJunction 0 203.81 156.09 163.27 172.94 153.14 88.87 104.36 68.06 46.32 140.03 337.03 168.05 99.83 503.68 441.44 326.84 295.18 239.64 103.34 159.28 122.94 108.32 143.92 42 E3a_E4a KnownJunction 0 13.19 81.24 52.81 37.92 57.39 33.45 19.83 42.43 28.93 4.22 5.16 19.06 0.00 12.07 8.90 15.64 7.48 55.88 25.98 70.24 0.00 19.59 3.84 43 E3_Db KnownBoundary 0 31.49 76.10 28.77 56.07 47.28 36.17 51.89 48.10 45.77 34.57 29.95 0.00 0.00 33.96 16.44 51.27 57.69 76.77 35.20 91.08 23.91 38.70 31.76 44 ER3c ExonRegion 0 47.30 56.94 30.27 55.95 64.89 31.45 51.70 51.25 66.20 60.50 29.09 9.52 1.64 43.93 20.02 43.69 60.57 91.00 49.53 106.38 41.76 47.50 30.10 45 ER3d ExonRegion 1 109.47 140.37 46.90 130.60 124.03 75.67 92.01 115.85 79.93 79.08 73.14 103.07 61.86 44.33 39.41 59.76 52.30 71.38 45.37 132.24 19.77 110.97 49.91 46 E3_Ac KnownBoundary 1 152.77 190.43 39.09 79.94 80.05 72.74 97.51 52.74 27.63 44.56 53.80 96.78 43.18 60.51 45.49 30.33 38.06 94.76 50.82 82.64 28.91 61.60 26.46 47 ER3e ExonRegion 0 315.53 459.95 216.41 198.90 188.04 156.82 171.51 136.69 95.07 196.87 285.39 159.50 108.76 411.61 453.59 250.55 286.00 267.63 138.30 235.59 154.63 150.39 141.15 48 E3_Dc KnownBoundary 0 65.12 387.96 38.50 53.61 112.82 79.05 101.71 72.08 33.65 58.08 28.95 39.01 15.10 36.61 8.90 41.61 36.28 84.48 25.60 73.50 20.88 57.74 35.25 49 E3c_E4a KnownJunction 0 255.97 244.76 268.86 294.57 161.04 130.04 116.46 96.77 93.55 163.56 209.68 100.53 91.88 324.92 474.94 291.97 249.93 210.91 115.39 187.53 116.82 103.73 145.12 50 ER3f ExonRegion 0 98.10 188.00 65.59 95.41 140.80 91.65 115.11 119.28 64.83 69.24 64.45 74.28 57.52 40.71 28.89 51.62 60.86 81.64 60.14 118.30 23.46 93.24 54.33 51 E3_Dd NovelBoundary 0 148.77 106.17 63.89 149.66 207.56 109.48 123.26 126.43 88.69 66.38 64.28 81.33 89.93 30.55 19.66 31.36 68.44 48.04 41.60 102.01 26.19 85.11 42.77 52 Ix Intron 0 198.12 282.65 95.77 144.70 178.24 82.37 119.55 126.21 64.70 60.98 52.78 94.16 48.12 35.76 46.32 53.50 53.07 53.61 49.73 110.14 16.09 106.24 40.89 53 Ix_AR1 ActiveIntronRegion 0 198.72 283.50 96.06 145.13 178.78 82.62 119.91 126.59 64.89 61.16 52.94 94.44 48.26 35.87 46.45 53.66 53.23 53.77 49.88 110.48 16.14 106.56 41.01 54 E4_Aa NovelBoundary 1 147.36 171.55 35.42 47.01 134.04 42.93 75.74 33.89 20.86 25.47 16.43 80.88 103.56 18.54 4.82 18.03 47.22 24.62 48.66 86.67 21.68 38.58 23.22 55 ER4a ExonRegion 0 472.46 502.54 379.42 503.14 318.68 274.88 275.04 302.37 208.88 268.18 460.32 156.51 101.33 412.47 520.47 362.34 362.86 412.18 269.01 364.85 149.75 220.45 158.41 56 E4_Da KnownBoundary 0 348.65 487.08 204.52 365.42 229.20 273.65 238.83 172.10 87.33 144.19 209.84 220.57 82.30 265.17 273.94 191.15 213.74 149.27 267.68 219.62 57.02 106.49 55.57 57 ER4b ExonRegion 0 270.13 399.49 227.65 400.03 228.08 168.70 214.06 239.79 133.98 172.21 152.10 107.78 56.35 137.42 202.02 129.07 117.90 147.79 130.70 214.18 35.08 81.61 57.25 58 ER4c ExonRegion 0 24.34 17.29 5.51 10.22 4.68 13.30 4.30 12.96 2.16 3.44 0.00 8.66 0.00 0.81 6.53 3.72 0.00 4.62 0.00 7.98 0.00 2.08 0.00