Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 HCN3 Gene 0 20.14 57.53 86.71 81.18 65.04 202.70 58.33 190.75 130.20 177.42 26.27 8.75 13.40 28.42 27.71 19.16 24.59 240.63 63.47 108.32 17.61 10.68 11.67 2 368358 Transcript 0 14.43 46.36 52.89 52.64 48.34 149.97 43.60 127.09 79.13 100.47 8.67 3.33 5.20 15.13 12.21 9.93 14.46 125.69 39.40 60.15 7.10 7.14 11.46 3 496230 Transcript 0 3.39 11.09 19.53 12.95 15.77 41.23 18.05 47.60 30.52 37.06 11.03 0.66 4.43 11.09 8.81 6.92 11.84 66.33 11.75 30.90 6.39 2.04 2.76 4 467204 Transcript 0 0.00 1.68 4.52 0.00 0.00 12.15 1.81 6.51 3.37 5.95 1.34 0.00 0.00 0.00 2.23 0.00 0.00 5.14 4.19 0.00 0.00 2.69 6.40 5 492035 Transcript 0 0.00 0.00 1.45 13.55 0.00 0.00 0.00 8.46 5.61 10.29 2.68 0.00 7.95 2.47 0.00 0.00 0.00 17.33 0.00 16.04 0.00 0.00 0.00 6 ER1a ExonRegion 0 0.00 1.15 8.53 6.85 2.38 13.93 1.80 21.26 23.30 37.70 7.72 0.00 1.68 6.16 3.94 5.54 8.60 32.68 11.54 28.66 4.54 3.70 1.36 7 E1_Ab KnownBoundary 0 0.00 2.50 18.12 18.15 11.63 24.25 6.40 61.69 45.08 81.39 25.22 0.00 0.00 21.72 0.00 7.09 4.21 155.82 32.66 41.29 11.55 9.00 8.71 8 ER1b ExonRegion 0 0.53 13.44 24.83 22.94 19.40 104.05 31.10 85.80 71.51 93.34 22.20 1.10 1.17 19.96 17.05 11.55 17.64 147.16 46.50 76.15 14.12 8.90 3.51 9 E1a_E2a KnownJunction 0 11.04 21.25 32.70 33.73 46.60 153.78 49.29 113.61 99.83 112.82 35.01 12.60 0.00 19.78 4.45 20.25 20.76 130.12 49.04 100.48 21.00 7.65 0.00 10 ER2a ExonRegion 0 3.84 24.88 43.63 42.90 30.46 122.62 30.92 129.80 113.94 156.83 29.64 8.79 5.53 30.86 26.61 22.96 28.42 237.29 60.90 118.62 16.34 10.60 4.66 11 E2_Ab KnownBoundary 0 3.78 14.93 42.87 46.91 27.42 172.68 23.98 143.31 156.22 174.55 31.27 0.00 6.01 35.38 51.18 31.62 30.48 278.11 76.80 133.46 16.49 13.47 0.00 12 ER2b ExonRegion 0 5.14 21.63 50.16 46.69 34.39 126.90 38.61 124.35 110.79 152.88 36.49 4.87 1.99 25.96 27.74 13.85 23.74 267.56 78.73 121.16 20.69 6.42 8.44 13 E2a_E3a KnownJunction 0 6.59 18.42 50.62 37.02 33.79 159.96 40.50 111.19 94.62 114.49 22.80 0.00 6.82 7.42 22.25 11.11 13.37 221.61 64.57 110.90 9.51 2.33 7.43 14 E2a_E3b KnownJunction 0 0.00 0.00 4.32 0.00 0.00 11.47 0.00 4.56 1.65 2.63 2.68 0.00 0.00 0.00 0.00 0.00 0.00 4.44 4.14 0.00 0.00 0.00 12.80 15 I2 Intron 0 3.62 6.40 7.23 7.86 20.93 34.80 16.67 15.52 9.93 19.22 4.00 2.98 2.43 7.82 4.33 2.67 7.72 14.71 12.61 9.38 9.71 4.69 4.75 16 I2_SR1 SilentIntronRegion 0 3.23 5.44 6.69 7.82 19.85 32.02 17.11 16.14 8.78 18.23 4.04 2.37 2.81 7.72 5.28 3.08 7.50 12.45 13.04 10.05 11.68 4.09 4.51 17 I2_AR1 ActiveIntronRegion 0 4.76 9.24 8.83 8.00 24.23 43.14 15.50 13.83 13.34 22.22 3.89 4.78 1.36 8.15 1.60 1.52 8.42 21.40 11.45 7.48 4.06 6.44 5.51 18 E3_Aa NovelBoundary 0 0.00 14.34 13.54 13.35 24.28 44.29 21.68 35.45 24.77 31.54 7.48 0.00 0.00 6.71 5.32 7.18 11.97 41.04 24.57 28.63 5.37 2.88 7.94 19 ER3a ExonRegion 0 8.06 30.91 66.30 43.73 37.87 189.37 49.22 143.50 122.64 138.85 32.08 12.48 5.76 23.69 20.22 13.15 21.84 265.06 75.80 127.48 14.98 7.13 10.71 20 E3_Da KnownBoundary 0 9.78 53.35 36.40 27.77 24.87 108.40 54.54 69.05 84.08 89.56 16.37 0.00 6.82 30.61 31.89 26.06 21.22 180.86 44.14 80.60 5.19 11.27 8.71 21 E3a_E3b KnownJunction 0 0.00 6.45 17.09 20.94 7.56 72.40 5.83 68.63 51.48 51.31 2.68 0.00 0.00 5.36 4.45 12.13 4.49 93.27 33.22 54.78 0.00 2.39 7.68 22 ER3b ExonRegion 0 10.16 24.20 47.10 36.77 32.44 113.99 36.71 94.55 68.55 94.84 23.98 1.99 6.47 25.97 17.53 20.75 27.66 179.04 35.24 62.10 13.62 6.12 8.29 23 E3_Ab KnownBoundary 0 16.60 36.11 49.82 51.28 7.56 131.57 45.93 119.24 91.23 97.54 19.16 0.00 6.82 19.78 8.90 11.11 21.69 195.62 37.84 39.18 24.22 11.08 23.13 24 ER3c ExonRegion 0 11.63 43.55 79.74 64.49 50.54 164.05 46.58 184.25 136.17 171.13 22.03 7.69 7.55 35.17 28.48 22.00 22.82 320.76 63.31 148.61 24.56 8.91 21.00 25 E3_Db NovelBoundary 0 18.82 24.47 76.22 44.98 70.29 142.13 66.91 118.83 92.07 117.28 14.21 6.30 0.00 18.84 41.54 13.07 30.76 161.75 35.67 118.18 8.22 5.94 8.45 26 E3b_E4a KnownJunction 0 9.93 18.22 42.34 28.77 23.34 65.42 16.65 103.18 93.89 112.93 12.95 5.85 0.00 7.42 0.00 7.78 9.44 139.57 27.48 86.67 8.22 5.82 20.40 27 I3 Intron 0 14.32 26.25 67.05 69.48 49.96 142.25 36.50 133.30 108.86 139.21 16.23 5.39 18.63 26.40 36.01 16.76 29.77 276.44 61.88 87.98 14.08 9.14 13.25 28 I3_AR1 ActiveIntronRegion 0 14.39 26.37 67.38 69.82 50.20 142.95 36.68 133.96 109.39 139.89 16.30 5.42 18.73 26.53 36.19 16.84 29.91 277.77 62.19 88.41 14.15 9.18 13.31 29 E4_Aa NovelBoundary 0 7.56 23.61 80.81 67.42 24.96 112.32 42.93 111.47 77.89 118.62 10.69 11.70 6.82 13.83 18.54 8.72 14.12 177.21 55.53 47.11 5.37 3.12 12.12 30 ER4a ExonRegion 0 11.48 44.66 68.29 44.60 50.18 212.32 50.11 140.57 100.53 161.32 21.72 6.39 15.03 27.00 29.45 23.55 18.01 191.27 45.64 106.74 15.35 8.83 12.37 31 E4a_E5a KnownJunction 0 0.00 48.35 79.27 90.20 32.17 179.10 34.76 178.75 124.62 201.65 24.80 5.85 0.00 26.49 14.59 10.85 7.95 346.22 72.00 68.26 8.83 7.90 4.10 32 E4a_E6a KnownJunction 0 0.00 3.35 4.73 0.00 0.00 12.83 3.62 8.46 5.09 9.27 0.00 0.00 0.00 0.00 4.45 0.00 0.00 5.84 4.24 0.00 0.00 5.39 0.00 33 ER5a ExonRegion 0 14.14 41.83 84.99 69.84 55.36 176.10 45.33 182.77 128.94 194.29 21.96 13.94 11.03 36.36 29.70 23.69 24.43 331.17 64.88 106.63 15.18 10.32 12.70 34 E5a_E6a KnownJunction 0 10.15 59.33 89.03 64.96 42.28 235.83 72.47 221.18 135.04 169.93 7.21 0.00 0.00 32.67 18.54 4.10 25.81 264.56 54.50 99.65 17.48 8.76 31.16 35 E5a_E6b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.44 3.84 2.46 1.68 0.00 2.26 0.00 0.00 2.47 0.00 0.00 4.21 0.00 0.00 3.00 0.00 0.00 0.00 36 E6_Aa NovelBoundary 0 3.26 9.74 14.37 5.39 7.89 68.88 24.47 22.06 23.81 25.30 4.74 6.30 0.00 2.47 8.90 7.60 11.31 15.17 0.00 5.62 6.18 0.00 0.00 37 ER6a ExonRegion 0 12.92 57.07 112.54 60.14 38.05 190.17 59.03 239.22 139.82 194.08 18.90 10.63 14.56 37.48 33.57 17.45 22.16 255.66 46.29 116.47 22.12 11.91 11.14 38 E6_Ab KnownBoundary 0 34.01 98.01 145.23 82.44 93.29 289.61 71.19 296.88 177.98 239.02 16.00 18.61 20.29 41.03 18.30 31.10 27.30 354.26 52.33 158.96 17.05 10.53 3.50 39 ER6b ExonRegion 0 17.12 44.28 101.61 73.16 66.89 223.22 59.47 214.37 143.03 208.55 21.88 5.71 5.33 35.68 24.79 17.97 42.76 291.31 65.95 122.94 23.46 13.45 9.84 40 E6a_E7a KnownJunction 0 11.11 26.44 90.74 86.10 51.44 167.57 54.59 227.06 139.35 199.72 17.58 0.00 12.99 29.08 24.11 8.37 25.90 254.69 32.19 79.00 17.61 12.19 7.60 41 ER7a ExonRegion 0 8.36 34.07 117.18 85.74 41.99 183.31 36.51 240.92 171.92 241.71 37.12 11.47 13.38 35.72 36.56 27.26 20.77 342.49 56.95 126.92 22.09 20.02 16.16 42 E7_Da KnownBoundary 0 5.85 18.62 99.61 62.00 44.14 191.48 45.44 209.19 180.50 262.71 24.48 5.55 13.15 32.20 25.34 19.57 26.74 301.61 71.44 82.07 22.18 11.02 18.52 43 ER7b ExonRegion 0 18.39 48.92 99.58 83.37 59.17 215.46 54.26 217.81 161.14 223.90 29.39 6.33 13.98 34.37 36.07 19.49 28.22 290.84 58.13 117.88 23.01 11.03 12.85 44 E7_Ab KnownBoundary 0 37.04 87.62 258.33 328.16 84.72 240.88 87.04 556.92 362.21 434.33 26.85 23.56 20.45 31.02 52.78 33.07 55.45 389.37 110.31 192.58 44.17 19.47 33.12 45 ER7c ExonRegion 0 46.15 112.52 229.60 259.07 139.53 408.49 102.27 517.41 353.36 430.68 62.12 31.27 37.20 53.38 57.91 40.95 51.44 477.99 157.10 272.67 43.52 23.10 28.88 46 E7_Db KnownBoundary 0 78.68 142.61 189.17 232.04 140.49 328.62 96.76 453.70 263.60 374.67 28.80 0.00 27.60 57.57 45.00 24.87 39.64 448.19 116.33 214.25 69.81 19.04 24.41 47 E7b_E7c KnownJunction 0 0.00 9.08 11.50 2.06 14.86 7.27 13.60 45.80 21.33 16.33 6.84 0.00 6.82 4.83 8.90 0.00 3.65 19.94 0.00 27.61 5.56 0.00 0.00 48 ER7d ExonRegion 0 45.40 138.75 209.09 227.11 153.99 415.31 123.90 442.29 254.75 352.28 48.20 23.80 54.33 41.61 48.92 30.11 37.73 397.52 149.69 204.69 31.25 21.01 22.25 49 E7_Dc KnownBoundary 0 61.34 236.01 227.43 266.37 165.79 357.41 164.37 506.77 269.35 384.34 59.44 5.85 70.77 32.20 46.97 36.57 38.24 396.09 84.14 218.98 38.49 20.27 15.88 50 E7c_E7c KnownJunction 0 0.00 0.00 1.45 13.55 0.00 0.00 0.00 8.46 5.61 10.29 2.68 0.00 7.95 2.47 0.00 0.00 0.00 17.33 0.00 16.04 0.00 0.00 0.00 51 ER7e ExonRegion 0 61.98 164.89 149.79 170.45 189.48 427.70 137.92 324.36 185.86 243.43 25.74 16.64 24.32 31.44 34.14 27.88 33.39 237.97 97.76 117.68 13.49 20.85 17.12 52 E7_Ac KnownBoundary 0 17.63 60.78 70.40 100.52 63.50 163.09 46.81 155.38 48.15 89.58 12.74 0.00 21.91 2.65 0.00 0.00 4.77 38.22 22.49 31.96 0.00 0.00 3.76 53 ER7f ExonRegion 0 25.85 89.67 59.70 78.88 42.45 153.00 57.71 131.59 62.03 92.48 7.58 2.97 7.42 10.92 17.43 6.88 7.90 45.51 17.78 42.94 3.77 3.35 4.25 54 E7_Dd KnownBoundary 0 33.34 80.38 16.97 29.53 39.30 126.92 83.42 80.09 41.38 35.05 9.48 0.00 0.00 9.65 14.22 8.12 4.77 56.25 8.85 12.08 0.00 0.00 8.62 55 ER7g ExonRegion 0 18.10 28.40 1.32 1.69 15.25 53.97 23.56 5.36 3.28 2.49 1.05 0.53 0.00 1.69 1.51 0.00 0.22 5.09 0.31 2.18 0.00 0.00 0.47 56 ER7h ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00