Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 RIT1 Gene 0 60.42 66.52 47.41 68.53 92.63 89.33 67.73 59.67 73.02 47.51 48.11 51.88 53.26 69.50 57.87 47.49 65.83 21.66 27.29 40.74 35.38 64.71 55.76 2 368323 Transcript 0 43.69 44.76 25.72 41.59 65.79 85.39 54.10 34.48 42.34 29.37 34.25 28.55 31.27 44.83 35.48 35.00 45.02 15.94 20.70 23.68 33.26 38.93 47.40 3 461050 Transcript 0 2.68 17.50 10.05 12.21 9.68 43.32 18.17 7.53 20.28 11.73 0.32 0.18 0.59 0.20 0.48 0.25 0.41 11.77 6.20 11.09 0.18 0.43 0.00 4 368322 Transcript 0 0.00 2.21 0.05 0.00 4.24 4.01 0.00 0.00 4.34 0.00 3.04 4.92 0.00 0.02 5.33 0.16 0.00 0.00 0.00 0.00 2.24 2.11 4.50 5 462687 Transcript 0 13.78 12.76 14.11 23.31 26.87 14.58 19.07 14.49 21.63 18.93 9.59 15.49 24.64 13.83 16.61 16.24 10.27 5.65 8.97 19.06 3.92 10.48 16.25 6 ER1a ExonRegion 1 16.31 9.23 2.41 3.15 19.17 69.83 30.80 3.54 8.18 9.36 32.48 0.00 1.77 33.09 23.97 36.35 40.58 15.78 16.19 7.25 45.12 22.13 55.03 7 E1_Ab KnownBoundary 1 87.13 45.98 12.06 12.69 90.32 238.61 83.07 14.25 25.14 28.34 127.03 0.00 6.66 142.80 83.94 151.67 187.19 66.66 60.43 36.94 153.27 103.73 189.42 8 ER1b ExonRegion 0 23.95 13.93 15.68 16.50 27.47 56.52 32.85 19.83 27.65 26.52 38.18 4.63 6.32 38.03 31.20 49.56 65.66 17.38 17.16 17.55 49.57 46.52 64.66 9 E1a_E3a KnownJunction 0 3.78 0.00 17.50 8.56 13.67 7.44 0.00 11.50 14.03 10.02 14.48 6.30 6.82 14.30 5.44 19.99 39.36 4.52 7.81 5.62 38.61 16.41 18.44 10 I1 Intron 0 3.98 3.04 4.45 2.28 2.01 4.48 3.73 3.87 8.62 4.17 6.90 3.47 5.33 9.86 6.01 8.37 8.68 4.64 9.56 3.18 8.70 7.42 15.40 11 I1_SR1 SilentIntronRegion 0 4.00 3.05 4.47 2.29 2.02 4.50 3.74 3.88 8.65 4.19 6.92 3.48 5.35 9.90 6.03 8.40 8.72 4.66 9.59 3.19 8.73 7.45 15.46 12 E2_Aa NovelBoundary 0 24.52 9.08 12.71 18.21 4.16 19.14 13.12 13.47 14.58 8.65 14.27 0.00 14.61 24.84 19.78 27.60 9.07 14.38 7.53 11.82 16.56 10.04 18.27 13 ER2a ExonRegion 0 0.00 1.34 0.10 0.00 0.00 2.22 0.00 0.00 1.76 0.00 0.86 3.53 0.00 0.04 4.35 0.31 0.00 0.00 0.00 0.00 1.51 1.10 1.31 14 E2_Da NovelBoundary 0 11.71 6.64 17.36 7.23 8.15 12.44 15.10 5.75 8.45 7.63 16.48 6.15 6.33 31.67 0.00 16.41 17.30 14.18 4.42 5.94 16.87 13.41 28.08 15 E2a_E3a KnownJunction 0 0.00 3.09 0.00 0.00 8.49 5.79 0.00 0.00 6.92 0.00 5.21 6.30 0.00 0.00 6.30 0.00 0.00 0.00 0.00 0.00 2.97 3.12 7.68 16 I2_AR1 ActiveIntronRegion 0 0.00 0.00 0.00 0.00 0.00 2.63 5.71 0.00 0.00 0.00 6.94 2.56 2.77 6.91 11.77 2.13 4.74 1.33 6.86 4.61 4.75 5.96 6.33 17 E3_Aa NovelBoundary 0 3.78 0.00 4.85 14.08 24.79 0.00 15.94 7.64 11.89 12.41 8.00 6.00 0.00 19.72 9.39 7.26 14.03 11.07 0.00 0.00 2.72 11.88 32.18 18 E3_Ab NovelBoundary 0 3.41 0.00 29.48 7.62 15.20 28.56 2.25 14.50 18.23 10.13 32.85 0.00 6.82 29.84 21.88 22.73 45.35 10.49 13.65 17.77 54.73 25.23 22.79 19 ER3a ExonRegion 0 4.38 2.32 19.61 11.29 12.61 22.79 0.57 10.74 21.88 14.09 42.39 8.04 13.40 34.34 28.81 25.26 63.90 6.34 5.92 9.42 60.76 27.98 20.56 20 ER3b ExonRegion 1 26.78 11.10 34.45 27.09 18.91 15.51 11.92 34.79 55.94 35.62 78.88 14.78 29.11 95.02 99.89 83.07 118.37 43.92 29.21 35.84 91.05 93.23 119.77 21 E3_Da NovelBoundary 0 34.15 21.97 26.46 21.21 24.70 13.29 6.18 15.24 18.58 21.95 15.53 0.00 6.33 12.13 13.85 27.43 25.99 16.33 25.69 9.01 8.46 34.66 51.64 22 E3a_E4a KnownJunction 0 27.34 25.46 56.71 41.12 37.44 46.05 14.00 54.67 66.20 31.46 58.49 5.55 15.10 59.33 90.61 95.79 75.36 62.93 8.09 24.22 49.79 67.30 125.57 23 I3 Intron 0 16.66 14.62 6.88 6.95 10.07 16.95 9.06 8.82 13.23 5.85 13.23 5.40 10.58 15.43 12.56 19.33 18.08 5.36 1.09 5.10 4.53 19.97 17.09 24 I3_SR1 SilentIntronRegion 0 16.89 14.82 6.96 7.04 10.21 17.18 9.19 8.94 13.41 5.93 13.40 5.45 10.72 15.63 12.73 19.59 18.32 5.43 1.11 5.17 4.57 20.18 17.30 25 E4_Aa NovelBoundary 0 52.45 6.25 16.50 19.51 35.57 26.35 22.61 13.06 22.22 21.41 17.11 11.85 25.97 33.20 28.18 7.86 34.41 10.94 9.41 9.33 2.35 44.52 28.43 26 ER4a ExonRegion 0 38.77 31.22 64.13 43.49 103.04 164.78 48.06 60.62 78.51 46.38 108.75 49.75 46.24 96.22 100.47 112.42 116.46 49.89 37.94 44.42 83.20 90.94 136.01 27 E4_Da KnownBoundary 0 24.23 17.89 30.37 34.63 52.97 49.80 42.71 33.19 29.05 18.53 19.37 45.46 27.76 11.89 15.58 35.55 14.68 14.26 23.44 13.81 11.06 17.94 28.51 28 E4a_E5a KnownJunction 0 66.46 28.15 40.95 13.92 96.94 169.73 79.01 39.18 65.54 35.91 127.14 38.71 40.74 121.90 87.40 79.89 133.80 30.47 8.00 35.73 92.23 90.26 90.57 29 ER4b ExonRegion 0 13.78 12.76 14.11 23.31 26.87 14.58 19.07 14.49 21.63 18.93 9.59 15.49 24.64 13.83 16.61 16.24 10.27 5.65 8.97 19.06 3.92 10.48 16.25 30 E4_Db NovelBoundary 0 6.74 8.88 19.63 21.51 15.20 5.45 15.77 39.76 14.70 19.47 15.00 18.91 6.82 2.83 19.04 8.72 14.31 13.14 8.28 14.45 6.18 6.25 23.13 31 I4_AR1 ActiveIntronRegion 0 7.95 12.90 5.61 5.06 14.24 8.31 10.14 12.43 12.49 11.61 11.40 8.95 16.68 15.23 13.35 14.00 8.33 8.54 14.58 10.97 9.18 3.63 19.64 32 I4_AR2 ActiveIntronRegion 0 21.03 24.76 11.88 25.47 23.54 15.09 18.03 13.90 17.89 17.62 10.81 7.48 14.10 9.06 8.59 6.64 13.60 3.39 7.75 14.71 2.07 15.54 5.41 33 E5_Aa NovelBoundary 0 44.75 52.36 13.93 37.02 49.15 24.59 19.25 9.57 19.44 16.76 14.74 0.00 8.28 17.25 13.23 12.82 18.51 4.31 4.80 17.13 0.00 33.80 7.00 34 ER5a ExonRegion 0 42.39 70.08 44.92 25.89 70.65 107.23 88.15 44.24 61.17 42.93 86.48 56.81 30.74 133.18 97.74 72.94 129.40 29.46 24.92 36.54 89.46 105.70 78.42 35 E5_Da NovelBoundary 0 37.04 40.26 15.73 51.44 34.21 15.28 29.01 23.82 29.98 23.10 10.21 23.41 21.91 4.59 9.64 0.00 13.46 2.07 4.61 15.28 5.31 11.82 7.00 36 E5a_E6a KnownJunction 0 3.56 9.27 8.49 4.73 12.39 36.46 19.87 4.56 11.86 10.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9.74 0.00 17.83 0.00 0.00 0.00 37 E5a_E7a KnownJunction 0 45.34 29.80 40.63 19.28 37.18 50.03 29.19 56.52 40.36 31.64 56.38 57.62 39.12 97.00 121.15 47.17 114.91 16.37 18.17 25.31 88.84 52.17 84.25 38 I5 Intron 0 13.49 14.69 10.09 12.96 15.92 7.01 10.69 10.95 14.90 10.90 6.57 1.52 11.49 11.45 5.37 6.32 8.42 5.48 9.48 8.14 0.94 7.97 8.74 39 I5_AR1 ActiveIntronRegion 0 13.72 14.94 10.26 13.17 16.19 7.10 10.87 11.13 15.15 11.08 6.67 1.54 11.69 11.63 5.46 6.42 8.53 5.57 9.64 8.28 0.95 8.10 8.88 40 E6a_E7a KnownJunction 0 0.00 20.85 8.34 15.55 6.96 45.83 16.91 7.89 20.57 9.54 0.00 0.00 0.00 0.00 0.00 0.00 0.00 12.85 12.24 0.00 0.00 0.00 0.00 41 ER6a ExonRegion 0 4.50 22.37 13.33 16.35 9.70 47.68 17.71 10.15 28.41 15.20 0.97 0.54 1.76 0.61 1.45 0.74 1.24 12.70 6.37 15.43 0.55 1.30 0.00 42 I6 Intron 0 14.03 30.08 7.45 10.36 17.74 11.22 8.10 2.63 10.33 3.49 3.94 5.84 3.94 6.82 5.22 3.03 6.73 0.00 9.75 10.85 3.37 7.44 10.48 43 I6_AR1 ActiveIntronRegion 0 14.30 30.67 7.60 10.56 18.10 11.43 8.27 2.68 10.52 3.56 4.02 5.96 4.02 6.96 5.33 3.09 6.87 0.00 9.91 11.03 3.44 7.59 10.67 44 E7_Aa NovelBoundary 0 48.90 123.33 57.45 71.82 56.88 32.71 50.08 32.82 34.87 27.18 18.43 24.46 6.17 26.08 22.99 12.13 23.09 26.28 24.75 23.84 14.89 5.63 31.58 45 ER7a ExonRegion 0 61.05 78.99 91.97 91.85 77.30 103.79 66.66 91.27 111.37 67.11 106.61 87.24 67.22 178.68 126.91 124.63 167.57 59.65 53.40 73.38 113.98 119.59 154.13 46 E7_Da NovelBoundary 0 13.56 49.00 27.85 31.06 14.94 5.51 12.37 21.24 15.74 7.28 0.00 6.30 6.33 0.00 0.00 0.00 8.70 6.14 8.47 21.35 0.00 0.00 0.00 47 E7a_E8a KnownJunction 0 44.67 73.93 89.91 87.83 53.90 74.90 72.16 90.45 109.03 70.16 134.03 102.18 32.47 208.67 89.38 108.86 167.84 48.21 46.21 64.49 98.29 73.91 127.11 48 E8_Aa NovelBoundary 0 17.41 39.40 5.71 24.57 20.20 11.02 0.00 8.67 9.95 11.42 0.00 0.00 0.00 0.00 4.70 0.00 4.77 4.10 4.05 5.88 2.59 0.00 8.37 49 ER8a ExonRegion 0 92.13 88.90 79.43 94.55 119.92 129.66 111.03 89.56 127.66 77.53 121.49 79.75 68.40 182.27 139.64 129.07 155.80 52.00 58.60 74.30 101.85 148.37 137.65 50 E8_Da KnownBoundary 0 66.23 70.97 88.55 72.45 156.37 163.94 121.98 105.40 136.17 83.92 135.46 36.01 47.72 146.27 146.86 124.16 170.92 47.05 54.31 109.11 71.79 162.09 72.64 51 ER8b ExonRegion 0 61.81 63.12 60.14 74.11 83.36 86.50 75.03 95.46 116.69 80.74 126.96 73.46 67.89 111.44 112.28 87.20 151.28 38.79 44.93 64.24 41.87 160.30 85.94 52 E8_Db KnownBoundary 0 55.27 99.65 48.82 79.91 112.82 104.83 104.22 78.20 97.77 93.64 93.66 91.08 80.51 83.05 123.25 52.04 108.37 16.04 17.79 58.16 39.97 159.82 75.55 53 ER8c ExonRegion 0 71.07 80.28 49.03 80.03 112.41 100.94 77.40 65.41 76.50 49.38 36.03 57.10 60.77 56.56 46.99 33.66 49.46 16.09 25.22 40.10 21.39 55.73 39.77