Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ILF2 Gene 0 494.90 1076.81 897.24 863.84 787.43 567.82 674.90 718.41 460.76 956.73 1518.40 915.89 586.49 1205.61 1209.93 1070.99 1013.22 1055.49 971.79 912.76 462.45 631.66 395.10 2 361891 Transcript 0 597.99 1392.30 1256.43 1347.47 1149.10 767.39 1050.77 908.97 625.84 1238.21 1913.88 1617.13 1005.24 1744.07 1620.24 1747.08 1378.52 1646.90 1664.56 1216.42 583.86 1033.01 610.50 3 368681 Transcript 0 4.20 6.07 19.38 13.00 6.54 3.68 13.49 7.82 7.25 7.42 8.14 8.66 9.67 10.65 4.97 4.49 10.62 8.88 11.87 8.01 7.44 6.11 7.96 4 368684 Transcript 0 129.27 157.34 51.57 53.77 107.34 122.19 144.05 60.06 43.78 103.78 171.96 16.43 12.56 84.71 108.25 144.59 152.78 37.58 90.46 150.00 70.37 56.79 55.37 5 480213 Transcript 0 102.06 104.98 121.55 111.17 123.12 90.95 136.13 112.83 64.29 72.95 92.26 51.16 39.87 89.60 90.54 94.75 61.99 116.72 119.53 75.79 35.50 90.56 54.29 6 ER1a ExonRegion 0 1.39 5.80 2.08 0.69 1.32 10.40 4.78 2.37 0.79 1.56 7.99 0.00 0.00 10.04 9.09 2.22 7.34 0.00 0.71 7.11 0.56 3.02 1.80 7 E1_Ab KnownBoundary 0 29.12 34.07 8.25 3.13 36.25 96.93 51.23 15.36 4.08 5.40 48.49 0.00 0.00 49.74 32.63 40.84 46.19 21.39 15.25 35.35 18.72 15.92 22.54 8 ER1b ExonRegion 1 491.40 593.33 197.11 210.57 405.00 626.64 517.50 204.98 161.38 391.27 549.31 55.67 113.00 532.94 593.22 654.47 554.65 104.48 311.87 647.07 207.46 240.84 258.79 9 E1a_E2b KnownJunction 1 1680.08 1930.84 523.16 578.98 1493.46 1284.09 1816.24 546.20 402.60 957.41 1350.66 103.68 90.58 807.70 999.32 1486.45 1134.83 1185.77 1129.35 1272.02 544.38 510.08 564.25 10 ER2a ExonRegion 0 379.56 452.81 131.11 144.01 310.39 359.42 423.23 160.75 114.04 264.93 407.84 36.08 25.01 213.84 295.93 416.10 382.90 82.53 254.83 412.76 159.40 155.57 160.54 11 ER2b ExonRegion 1 520.56 664.19 415.55 395.79 469.89 440.30 631.84 495.66 332.83 759.50 713.04 127.10 177.51 330.96 451.42 489.14 648.77 247.44 463.55 626.61 300.56 235.12 200.04 12 E2a_E3a KnownJunction 0 126.76 242.13 298.42 215.69 114.77 63.77 68.58 315.20 208.97 479.14 377.10 122.59 229.37 273.94 223.38 186.70 263.86 225.17 162.64 157.56 198.37 100.30 42.43 13 ER3a ExonRegion 1 116.46 263.75 325.81 215.46 109.02 95.66 99.08 334.96 251.73 648.35 1258.68 193.62 208.43 456.57 281.22 237.08 954.04 302.86 208.75 393.17 547.85 137.42 67.88 14 E3a_E4a KnownJunction 0 0.00 0.00 1.42 1.63 0.00 0.00 0.00 0.00 0.00 1.56 0.00 0.00 0.00 0.00 4.45 0.00 0.00 4.81 0.00 0.00 5.00 0.00 0.00 15 E3a_E4b KnownJunction 1 186.03 452.55 399.51 264.37 193.97 174.39 205.05 391.15 318.86 816.39 2146.75 253.58 194.14 735.13 388.78 299.24 1726.32 389.87 260.81 768.86 833.44 185.72 117.55 16 ER4a ExonRegion 0 8.25 19.22 22.18 15.67 11.64 7.15 8.94 19.45 17.29 44.84 108.05 13.20 12.66 40.28 24.37 17.68 75.43 25.41 16.56 37.23 46.72 14.79 5.58 17 ER4b ExonRegion 1 231.82 629.22 637.20 611.18 259.70 209.49 208.46 673.75 480.72 1135.79 1840.66 431.49 388.96 1473.15 1302.83 1518.13 1280.02 1730.61 1076.93 1144.84 614.69 675.36 568.35 18 E4a_E5a KnownJunction 0 142.54 863.73 834.54 822.14 511.29 406.75 343.85 838.77 504.51 1079.02 1302.75 562.23 495.91 1115.61 1250.39 1509.01 772.88 2198.44 1245.59 1109.22 378.39 601.74 614.53 19 ER5a ExonRegion 0 397.69 1475.15 858.03 843.08 1562.40 1372.53 1119.10 875.71 556.59 1175.71 1750.61 1250.83 906.80 1540.96 1129.22 1274.36 1228.70 1653.26 969.90 1143.18 596.33 725.55 427.36 20 E5a_E6a KnownJunction 0 767.10 2447.26 1208.06 1138.62 2165.54 1850.41 2311.30 1056.75 710.38 1477.51 2177.13 1549.70 947.18 2004.90 1341.87 1213.78 1724.82 1480.47 1103.37 1400.87 753.19 806.14 406.93 21 ER6a ExonRegion 0 723.29 2690.64 1138.70 1101.04 1083.08 937.62 1267.63 1008.09 753.47 1517.47 2423.50 1711.74 1089.95 1965.23 1773.71 1672.01 1762.04 1512.21 1542.43 1395.49 748.70 1212.49 514.88 22 E6_Da KnownBoundary 0 3.78 0.00 33.23 19.61 0.00 2.67 31.31 9.00 10.45 6.72 16.27 12.15 15.10 7.06 5.19 0.00 13.46 13.72 4.14 11.38 0.00 11.39 4.35 23 E6a_E7a KnownJunction 0 967.80 3292.70 1476.62 1396.99 756.37 491.08 726.26 1193.24 855.72 1689.54 2751.91 1930.53 1907.67 1745.08 1412.82 1241.64 2109.49 1401.12 958.62 1593.65 873.53 764.07 432.36 24 ER6b ExonRegion 0 4.20 6.07 19.38 13.00 6.54 3.68 13.49 7.82 7.25 7.42 8.14 8.66 9.67 10.65 4.97 4.49 10.62 8.88 11.87 8.01 7.44 6.11 7.96 25 E6_Db NovelBoundary 0 114.91 67.88 200.94 221.15 98.30 58.89 128.73 204.55 213.92 170.14 32.17 57.62 13.15 25.55 17.31 114.76 58.25 284.45 140.33 81.24 46.27 75.50 109.01 26 ER7a ExonRegion 0 1007.78 3090.82 1469.89 1614.23 990.92 798.90 993.33 1160.68 851.09 1681.59 2846.22 2348.80 1450.57 2220.15 1853.29 1988.53 2069.96 1829.22 1611.17 1641.06 884.72 1168.76 659.50 27 E7a_E8a KnownJunction 0 1050.11 2765.63 1902.92 2088.08 1875.72 1423.67 2132.22 1329.69 961.59 1916.87 3594.28 2638.01 1430.75 2801.65 2214.98 2116.20 2623.84 1880.70 2219.26 1941.55 1005.12 1443.33 600.87 28 ER8a ExonRegion 0 978.08 1878.49 1924.65 2073.80 1858.98 1111.20 1442.02 1459.75 1039.66 1988.65 3299.54 2848.42 1929.45 2587.44 2413.82 3135.26 2267.57 3054.14 2789.51 1828.34 934.30 1706.76 1100.59 29 E8a_E9a KnownJunction 0 682.49 2271.11 2443.88 2811.60 1700.34 1083.47 1345.51 1733.90 1249.18 2414.81 2902.16 2816.87 1850.69 3251.41 3111.45 3895.82 2235.25 3584.81 3952.11 2134.13 827.82 2398.88 1564.28 30 ER9a ExonRegion 0 563.26 2169.57 1749.44 1766.70 1393.08 993.52 1193.64 1283.69 936.01 1915.87 3702.41 2132.02 1602.09 2364.24 2079.65 2168.86 2426.91 2360.56 2160.81 1889.00 1196.45 1252.67 797.99 31 E9a_E10a KnownJunction 0 572.99 2041.74 1461.24 1451.86 1275.81 722.77 1062.33 974.85 743.08 1408.67 2291.90 1776.58 1406.40 1888.35 1573.28 1364.94 1456.19 1585.76 1087.65 1246.58 858.77 770.50 436.55 32 ER10a ExonRegion 0 995.39 2787.16 1650.70 1610.28 1531.20 1057.08 1330.57 1198.17 839.40 1657.37 2642.67 1813.21 1324.13 2139.76 1934.25 2217.27 1720.59 2515.84 1966.27 1477.22 950.07 1141.39 867.38 33 E10a_E11a KnownJunction 0 2703.00 6873.25 2157.20 1875.89 3288.37 2143.60 2589.83 1648.92 1128.46 2276.77 4806.06 2344.36 1956.85 3434.06 3467.34 4870.26 2972.41 3594.55 4619.99 2878.77 1656.31 2252.23 1950.89 34 ER11a ExonRegion 0 976.43 2627.25 1516.89 1238.51 1519.18 1225.60 1502.08 1137.21 713.80 1404.88 2691.19 1442.13 1359.28 2291.55 2197.23 2258.29 1759.16 2170.00 2009.35 1700.82 1029.35 1011.92 865.27 35 E11_Da KnownBoundary 0 67.49 57.62 111.97 97.32 100.08 59.17 136.77 120.47 63.51 66.21 33.69 13.50 21.26 77.58 47.96 56.22 34.69 93.77 87.34 84.69 48.99 42.31 16.13 36 E11a_E11b KnownJunction 0 533.35 1107.96 1174.38 998.87 1031.66 854.68 1204.71 807.93 461.77 987.69 1582.35 1123.42 726.25 1704.29 1779.84 1267.62 1102.29 1338.82 953.06 1307.87 725.88 579.76 370.56 37 ER11b ExonRegion 0 102.06 104.98 121.55 111.17 123.12 90.95 136.13 112.83 64.29 72.95 92.26 51.16 39.87 89.60 90.54 94.75 61.99 116.72 119.53 75.79 35.50 90.56 54.29 38 E11_Ab KnownBoundary 0 114.02 119.98 103.07 108.74 135.65 72.74 114.20 82.93 60.27 57.67 73.86 49.22 35.71 60.16 68.48 51.01 73.21 80.83 60.05 73.12 26.50 49.29 37.99 39 ER11c ExonRegion 0 620.77 1184.90 1260.68 1085.29 888.79 765.61 876.21 827.40 507.29 1003.53 1729.59 982.11 805.20 1737.75 1617.35 1208.43 1067.96 1526.89 1052.87 1166.40 612.01 535.90 490.37 40 E11_Db NovelBoundary 0 260.86 131.88 97.96 110.28 159.76 125.04 161.59 125.23 60.47 53.13 92.55 30.91 12.17 49.68 53.03 51.01 56.85 83.49 96.85 55.48 19.52 33.31 27.23 41 E11b_E12a KnownJunction 0 921.72 1324.83 1299.42 1079.78 961.80 721.52 890.45 829.53 462.50 1048.37 1741.39 784.46 580.97 2054.57 2168.00 1302.82 1138.10 1361.58 1674.40 1280.52 603.01 639.77 644.49 42 ER12a ExonRegion 0 850.86 1132.90 1247.85 1056.73 1001.49 749.34 938.83 863.14 492.89 1043.02 1813.23 631.44 449.57 1792.05 1753.03 1159.29 1307.05 1338.08 1282.34 1193.59 602.10 606.26 473.86 43 E12a_E13a KnownJunction 1 1066.19 1285.56 1198.15 980.16 1211.12 870.29 1026.65 850.07 464.81 979.90 1771.82 435.44 384.39 1467.19 1896.66 1161.06 1222.35 1118.99 977.44 1151.85 515.10 519.32 379.78 44 I12_SR1 SilentIntronRegion 0 109.12 28.02 65.58 36.46 74.78 36.53 48.81 28.80 11.20 14.98 38.11 17.32 13.77 27.44 39.56 15.98 15.39 18.65 31.27 37.16 12.76 27.63 9.31 45 ER13a ExonRegion 0 542.12 771.76 1111.06 1064.15 898.87 526.76 634.30 910.65 494.23 1078.51 1490.83 881.77 308.33 1135.74 1506.34 826.12 869.27 644.48 851.22 908.01 319.45 670.82 313.19 46 ER13b ExonRegion 1 342.51 324.81 90.68 111.80 426.55 120.90 175.36 120.16 42.04 119.71 96.98 276.04 94.29 109.60 192.28 65.39 34.83 22.94 72.71 79.53 9.50 66.31 24.91 47 IG3 Intergenic 0 12.23 6.91 3.10 14.50 11.83 16.83 10.35 14.89 8.76 16.85 9.20 24.79 5.25 6.46 9.63 2.02 8.98 1.56 4.33 11.57 2.25 4.96 0.00 48 IG3_AR1 ActiveIntergenicRegion 0 12.40 7.01 3.14 14.70 11.99 17.06 10.49 15.09 8.88 17.07 9.32 25.13 5.32 6.54 9.76 2.05 9.10 1.59 4.39 11.73 2.28 5.03 0.00