Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 GATAD2B Gene 0 133.13 165.49 87.90 167.42 167.34 150.00 127.35 173.32 160.54 177.31 148.86 148.05 198.39 116.30 138.45 231.89 173.14 228.81 138.17 168.65 87.82 112.07 108.73 2 368655 Transcript 0 91.76 97.58 72.47 136.32 88.74 96.64 111.66 204.46 220.40 233.54 259.21 229.34 386.19 195.24 187.47 367.19 296.43 443.03 203.43 273.15 151.32 158.96 159.40 3 ER1a ExonRegion 0 6.83 6.28 2.55 5.82 9.01 14.27 12.15 9.73 9.95 10.82 10.66 2.05 6.99 12.91 17.14 11.64 22.43 31.06 13.70 24.22 6.87 2.68 10.55 4 E1a_E2a KnownJunction 0 14.22 9.67 20.14 29.63 16.30 0.00 16.56 46.13 46.53 55.90 38.17 6.30 41.39 62.10 55.38 48.36 69.85 115.70 44.61 114.35 17.73 30.92 23.65 5 I1 Intron 0 21.74 17.44 16.62 31.31 28.36 8.04 34.93 35.75 20.65 21.44 1.81 16.67 27.97 2.47 19.67 35.30 17.66 19.06 11.34 45.71 2.81 1.64 14.81 6 I1_SR1 SilentIntronRegion 0 3.94 4.15 4.41 6.49 4.93 4.25 12.09 8.63 8.67 8.06 2.31 6.52 10.33 2.24 10.90 26.14 16.58 20.93 10.32 43.67 3.63 1.03 10.70 7 I1_AR1 ActiveIntronRegion 0 5.48 16.51 11.75 9.70 10.07 5.61 14.49 23.69 22.23 21.32 8.87 34.13 28.97 5.06 20.48 38.46 36.50 40.43 10.68 72.47 11.93 0.00 35.41 8 I1_AR2 ActiveIntronRegion 0 14.17 18.24 10.36 22.57 20.94 10.89 40.04 24.65 16.65 17.81 2.95 26.32 27.07 3.17 16.49 44.33 25.40 24.15 13.64 60.05 5.03 3.14 21.49 9 I1_SR2 SilentIntronRegion 0 22.73 19.05 16.07 33.78 28.27 10.18 41.53 34.18 19.78 20.12 1.88 17.96 29.86 2.94 19.61 44.02 21.36 25.14 12.73 53.66 3.69 1.56 18.04 10 I1_AR3 ActiveIntronRegion 1 31.34 30.94 25.18 44.15 36.24 7.08 50.23 43.10 35.77 33.92 3.00 15.04 26.00 4.26 28.20 31.19 23.00 18.06 4.99 55.97 0.81 1.62 16.05 11 I1_SR3 SilentIntronRegion 0 20.81 18.25 17.78 31.94 28.31 6.67 34.50 34.50 19.01 19.38 1.12 16.03 26.84 1.85 18.95 26.40 12.12 12.48 8.29 35.38 1.74 1.52 10.46 12 I1_AR4 ActiveIntronRegion 0 17.78 4.98 11.02 26.04 29.95 6.13 12.90 40.94 21.92 12.74 0.38 9.19 23.30 1.50 18.42 16.04 12.35 18.50 8.77 32.84 0.84 2.07 14.66 13 I1_SR4 SilentIntronRegion 0 19.55 17.56 17.60 26.91 38.69 4.42 32.96 37.75 22.92 28.15 0.78 19.69 34.29 1.59 19.63 45.35 21.21 14.03 14.07 43.57 1.33 0.84 11.20 14 I1_AR5 ActiveIntronRegion 1 61.18 26.88 29.23 46.40 63.86 13.79 50.52 97.49 46.31 46.84 6.32 23.02 28.41 3.36 27.84 57.11 30.45 28.57 31.39 66.61 4.95 4.48 19.50 15 I1_AR6 ActiveIntronRegion 1 160.86 36.60 27.13 45.36 109.32 24.89 59.58 69.63 33.17 34.08 7.73 16.70 10.72 4.87 20.72 66.24 9.90 20.33 32.76 48.33 0.00 8.33 15.52 16 I1_AR7 ActiveIntronRegion 0 55.03 16.08 13.48 24.41 40.62 8.67 25.28 33.94 12.13 16.37 4.92 2.36 4.69 3.69 6.86 20.80 4.50 9.57 14.77 22.05 0.00 5.11 5.87 17 I1_SR5 SilentIntronRegion 0 26.89 14.56 21.28 37.80 36.52 7.50 26.17 53.12 28.45 33.74 1.99 17.34 38.50 2.41 25.75 37.37 17.52 17.87 14.56 45.43 2.77 1.65 18.13 18 I1 Intron 0 25.37 17.17 14.81 28.33 26.06 7.05 33.77 25.42 15.41 19.25 2.39 23.09 29.61 2.38 17.44 27.57 16.15 13.75 9.09 42.76 2.22 1.50 12.34 19 I1_AR3 ActiveIntronRegion 1 90.33 49.78 30.44 63.92 73.31 13.68 63.24 80.45 42.20 46.99 5.93 36.44 65.88 1.73 35.75 47.68 18.35 21.91 13.26 80.52 1.98 5.16 18.93 20 I1_SR2 SilentIntronRegion 1 42.05 22.43 15.53 33.73 57.62 14.29 55.33 35.60 18.84 30.22 1.44 24.15 46.78 0.82 21.75 22.99 10.20 10.66 6.97 50.51 1.23 0.40 8.71 21 I1_AR4 ActiveIntronRegion 1 31.87 14.01 18.15 50.62 43.56 9.41 56.85 52.23 30.78 33.71 1.91 37.49 57.19 0.67 26.13 35.10 31.24 8.88 14.87 65.37 2.18 4.47 12.55 22 I1_SR3 SilentIntronRegion 0 20.20 16.58 11.68 27.96 22.99 4.71 30.60 19.21 15.02 14.60 2.12 20.15 20.01 1.85 16.42 22.56 13.21 10.25 5.44 30.38 0.94 0.69 7.80 23 I1_AR5 ActiveIntronRegion 0 35.05 0.00 4.82 9.42 15.95 8.50 46.48 8.53 1.22 3.38 1.28 2.36 10.78 0.00 10.85 5.87 2.19 4.87 4.22 30.98 1.46 0.00 1.95 24 I1_AR7 ActiveIntronRegion 1 29.77 20.22 17.16 45.77 38.09 15.11 55.73 32.18 22.52 25.90 2.70 44.21 46.48 2.92 17.67 28.32 20.35 8.28 5.34 58.13 3.42 2.24 14.83 25 I1_SR5 SilentIntronRegion 0 21.52 17.55 16.93 37.67 31.73 9.09 54.05 30.71 23.31 28.24 3.51 36.00 42.49 3.34 14.04 37.13 22.41 11.58 9.41 68.95 2.46 1.30 14.70 26 I1_AR8 ActiveIntronRegion 0 35.57 33.20 20.65 39.01 30.91 16.59 52.43 32.33 22.18 25.62 3.40 25.44 34.03 1.92 24.83 41.03 18.77 16.75 17.77 74.86 4.87 2.67 23.90 27 I1_SR6 SilentIntronRegion 0 23.16 16.52 14.56 24.07 21.91 5.97 28.45 21.35 12.35 16.71 2.26 21.51 25.80 2.58 16.62 26.50 14.89 15.20 9.10 38.54 2.34 1.33 12.18 28 I1_AR1 ActiveIntronRegion 1 12.14 17.30 12.18 24.09 23.04 5.12 22.36 15.10 11.41 11.65 2.82 31.60 40.65 0.99 16.81 38.74 20.79 35.34 9.08 51.26 7.85 2.28 8.10 29 ER2a ExonRegion 0 42.46 65.20 49.84 86.32 40.04 37.03 56.65 147.49 149.04 168.48 174.98 125.98 131.08 139.86 120.91 225.44 213.72 306.98 133.67 241.98 120.12 96.65 97.67 30 E2a_E3a KnownJunction 0 99.28 46.77 42.72 100.92 22.07 32.88 47.30 188.74 197.42 220.54 183.89 174.21 134.57 170.76 126.96 328.03 263.49 384.36 149.84 270.56 131.22 136.31 131.72 31 E2a_E4a NovelJunction 0 0.00 0.00 0.00 1.53 0.00 4.43 2.12 0.00 2.81 1.13 0.00 10.80 6.66 2.65 16.69 3.93 8.04 8.66 0.00 0.00 0.00 5.69 0.00 32 I2_SR1 SilentIntronRegion 0 35.07 37.20 8.56 16.45 18.08 5.94 31.99 26.97 16.98 10.20 3.21 8.55 19.17 3.26 13.46 10.78 13.41 7.19 6.37 24.22 1.63 3.89 5.33 33 I2_AR1 ActiveIntronRegion 0 33.56 32.25 6.83 24.73 30.58 2.62 25.72 37.29 16.23 12.78 0.55 20.41 23.45 1.62 26.94 10.61 20.75 0.26 9.10 27.36 2.20 7.14 5.87 34 I2_AR2 ActiveIntronRegion 0 58.40 28.50 4.02 23.68 18.46 3.63 31.76 27.75 11.41 16.12 1.76 20.75 12.89 0.74 14.38 16.77 23.79 5.64 9.73 18.47 4.40 5.14 6.38 35 ER3a ExonRegion 0 85.78 106.93 71.92 107.13 53.91 63.21 98.29 173.42 222.86 224.16 225.76 273.89 211.70 207.25 154.93 318.43 294.11 404.61 148.51 264.53 156.16 143.12 151.89 36 E3a_E4a KnownJunction 0 112.02 179.18 63.30 82.94 53.82 94.60 179.79 163.80 217.94 207.64 211.26 205.72 312.64 229.74 161.94 355.63 301.82 354.92 170.92 249.92 136.34 155.59 115.07 37 ER4a ExonRegion 0 60.79 115.90 50.45 117.23 83.66 104.61 127.23 167.25 220.66 207.01 240.76 245.11 417.59 207.04 162.38 358.84 300.83 470.14 182.48 267.36 142.01 164.74 161.14 38 E4a_E5a KnownJunction 0 44.30 124.19 59.78 167.14 114.01 141.68 151.70 233.63 276.91 246.22 347.19 361.92 559.70 260.46 232.03 509.78 392.43 558.75 256.29 333.65 144.74 198.21 249.60 39 E4a_E6a NovelJunction 0 0.00 0.00 9.46 5.79 0.00 5.34 0.00 15.40 1.74 7.76 12.21 5.40 0.00 3.00 0.00 0.00 0.00 20.81 22.68 5.94 0.00 10.35 12.21 40 ER5a ExonRegion 0 49.13 78.15 72.65 159.99 61.30 93.01 95.10 258.67 288.57 291.33 324.08 370.60 740.81 297.62 231.86 452.19 382.75 632.18 223.82 397.13 211.79 189.11 203.54 41 E5a_E6a KnownJunction 0 166.92 138.13 75.13 208.30 74.45 110.45 169.76 312.33 293.05 339.13 478.49 295.90 761.64 323.27 255.64 529.43 550.91 768.01 384.01 490.37 311.05 233.18 227.58 42 ER6a ExonRegion 1 164.32 121.24 76.33 164.81 100.68 114.65 157.37 263.78 292.70 290.72 328.49 422.03 836.88 263.85 246.91 512.53 387.19 674.83 263.83 362.24 211.92 176.70 242.21 43 E6a_E7a KnownJunction 0 76.01 99.06 70.13 154.56 102.29 84.67 99.94 301.44 259.92 290.86 312.03 239.63 424.32 236.39 305.46 607.11 285.74 600.49 270.13 310.57 137.33 274.33 287.50 44 ER7a ExonRegion 0 52.10 86.71 92.60 113.70 78.96 93.66 96.80 221.12 238.66 257.71 300.14 310.39 527.73 197.88 178.05 364.36 296.14 414.16 187.24 264.70 177.24 137.69 174.62 45 E7_Da NovelBoundary 1 7.19 15.33 44.74 51.97 22.33 44.52 49.86 50.69 57.70 63.61 17.16 31.06 99.83 23.90 32.02 11.11 34.13 63.76 13.74 78.75 22.86 22.35 27.66 46 E7a_E8a KnownJunction 0 16.97 36.11 74.72 63.40 44.48 37.88 74.11 146.80 163.34 193.92 243.43 237.08 440.72 146.63 118.18 279.93 272.18 366.41 112.85 256.05 148.08 72.93 108.92 47 I7 Intron 0 32.39 29.40 18.87 65.50 41.71 15.64 49.05 45.24 42.31 37.94 18.45 34.22 42.70 10.74 23.59 31.89 21.63 28.82 20.33 34.49 9.33 32.71 18.08 48 I7_AR1 ActiveIntronRegion 0 53.06 44.70 27.94 105.18 65.75 16.38 75.36 74.60 66.55 57.58 23.96 47.26 53.97 11.35 31.33 39.05 25.92 28.58 24.62 47.79 5.96 53.45 22.86 49 I7_AR2 ActiveIntronRegion 0 5.41 0.56 2.18 13.40 6.99 1.12 9.41 16.04 8.17 8.28 15.79 11.79 12.77 4.24 6.77 8.09 9.35 2.67 9.56 12.17 0.00 22.92 4.89 50 I7_SR2 SilentIntronRegion 0 26.99 25.09 19.54 63.46 52.82 33.91 41.38 37.05 40.88 37.23 16.69 22.10 46.64 12.51 22.25 36.67 13.58 35.88 15.72 35.88 11.78 28.28 27.76 51 E8_Aa NovelBoundary 0 49.86 69.92 56.86 166.45 52.38 29.98 54.94 135.38 111.78 110.64 44.17 73.97 25.81 11.77 8.90 50.93 37.21 127.01 25.22 50.69 26.26 57.01 51.73 52 ER8a ExonRegion 0 109.44 108.98 107.70 181.71 114.89 107.84 128.18 259.52 270.39 328.01 371.55 260.41 460.69 220.42 187.10 446.73 360.58 516.51 230.79 318.54 197.92 164.55 192.53 53 E8_Da NovelBoundary 0 67.20 76.63 28.15 65.13 35.65 5.45 67.70 46.29 42.71 71.32 5.32 6.15 18.67 9.89 13.97 30.42 47.59 96.42 33.79 30.62 13.84 19.90 19.72 54 E8a_E9a KnownJunction 0 270.20 165.56 111.88 202.67 164.43 211.98 160.58 269.28 316.43 353.93 439.59 221.92 412.47 190.71 207.43 525.67 443.48 634.28 290.08 355.12 184.03 246.22 252.76 55 I8 Intron 0 76.43 71.62 20.09 48.74 38.95 10.29 43.25 50.51 27.10 46.05 9.02 31.51 47.14 7.36 14.61 28.73 23.29 23.90 18.93 31.09 9.06 17.59 18.11 56 I8_AR1 ActiveIntronRegion 0 81.82 77.95 22.07 53.34 41.61 10.96 46.25 55.40 29.58 50.47 9.52 32.66 50.24 7.72 15.42 29.67 25.25 26.14 20.10 33.22 9.50 19.00 19.13 57 E9_Aa NovelBoundary 0 202.26 69.99 25.13 64.73 53.14 2.33 18.42 72.74 54.60 66.16 23.80 30.61 40.91 7.95 4.45 49.22 31.79 147.28 16.00 21.80 24.09 16.47 41.23 58 ER9a ExonRegion 0 154.12 119.87 93.85 177.35 129.54 136.81 125.10 238.08 253.55 265.22 321.28 259.42 474.83 193.69 244.05 433.29 336.25 483.69 244.81 276.13 186.56 167.13 191.41 59 E9a_E10a KnownJunction 0 156.55 99.39 107.24 229.08 189.47 151.22 170.25 273.35 260.93 277.43 233.01 246.83 401.60 192.07 295.20 463.38 261.62 518.29 370.93 312.36 177.55 235.44 150.07 60 I9 Intron 0 39.31 19.18 14.53 16.76 28.40 8.65 35.52 18.23 9.77 19.65 4.56 5.48 21.96 1.18 7.50 15.77 11.68 24.11 5.63 16.94 4.55 4.30 6.93 61 I9_SR1 SilentIntronRegion 0 39.77 19.41 14.70 16.96 28.73 8.74 35.93 18.45 9.87 19.87 4.61 5.52 22.22 1.20 7.58 15.96 11.79 24.39 5.70 17.12 4.60 4.35 7.01 62 E10_Aa NovelBoundary 0 94.09 70.18 15.05 34.03 27.50 22.20 29.15 51.51 13.98 31.70 0.00 6.30 19.48 2.30 4.94 11.11 4.77 31.88 29.08 37.71 2.97 0.00 8.71 63 ER10a ExonRegion 0 52.32 87.48 88.49 161.39 96.74 96.29 97.83 225.01 240.94 247.82 273.24 237.42 347.42 196.11 219.76 345.72 306.12 450.54 196.49 255.99 176.43 151.83 146.53 64 E10a_E11a KnownJunction 0 38.60 60.98 95.71 163.95 113.24 128.28 140.79 225.00 262.79 263.68 268.38 199.87 329.04 256.70 285.06 393.14 343.34 448.57 269.75 230.55 135.79 254.18 132.65 65 I10 Intron 0 22.40 23.33 20.01 34.28 41.40 16.56 42.14 33.17 26.70 30.37 8.16 19.36 29.23 6.78 15.66 28.82 20.77 25.79 13.91 26.62 7.50 13.11 18.26 66 I10_SR1 SilentIntronRegion 0 20.58 24.62 21.07 36.98 45.15 17.48 47.58 32.17 29.30 30.80 8.29 22.60 34.67 6.88 14.66 26.91 20.14 24.28 12.45 26.16 6.72 14.30 17.64 67 I10_AR1 ActiveIntronRegion 0 29.12 19.10 16.53 25.20 28.73 13.52 23.54 37.16 17.91 29.25 7.78 8.17 10.46 6.54 19.35 35.88 23.26 31.44 19.24 28.56 10.35 9.09 20.69 68 E11_Aa NovelBoundary 0 29.93 37.82 20.14 38.26 31.49 24.19 42.79 39.39 35.24 56.17 9.27 24.01 20.45 6.89 37.46 26.32 11.87 64.58 32.57 34.26 11.31 5.39 15.62 69 ER11a ExonRegion 0 154.65 193.46 94.75 184.62 200.20 174.34 139.51 169.13 145.88 163.87 116.99 119.49 136.11 94.70 130.49 201.34 140.10 169.04 127.20 139.77 66.90 106.70 95.89