Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C1orf43 Gene 0 185.16 282.66 296.03 337.68 111.12 305.60 142.93 156.22 118.36 242.86 210.37 162.82 144.16 286.87 261.44 269.45 222.43 368.96 330.92 222.69 185.02 265.94 241.34 2 368516 Transcript 0 10.16 2.44 1.72 1.91 1.07 10.27 3.71 0.00 1.98 1.84 3.87 0.00 0.00 10.07 8.70 5.35 4.62 10.72 1.91 3.40 3.97 5.42 2.35 3 350592 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 362076 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 368521 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 6 368519 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 368518 Transcript 0 0.67 2.46 0.00 0.07 0.34 0.17 0.97 0.00 0.23 0.00 0.00 1.52 0.42 0.90 1.99 0.00 1.13 0.15 0.00 0.00 0.47 0.00 0.00 8 470180 Transcript 0 4.65 3.76 1.96 4.84 4.76 3.70 7.27 5.51 3.08 2.67 3.69 9.61 7.92 6.02 10.96 4.67 2.41 7.62 3.80 10.96 5.06 4.14 10.10 9 493814 Transcript 0 23.93 19.14 12.08 22.01 14.53 18.30 15.15 12.28 8.45 14.28 15.90 22.58 17.80 21.43 32.62 22.50 17.24 20.19 10.81 13.96 8.92 13.90 14.77 10 483282 Transcript 0 0.00 0.30 0.28 0.13 0.00 0.45 0.20 0.40 0.00 0.25 0.00 0.12 0.00 0.33 0.24 0.08 0.00 0.35 0.30 0.66 0.00 0.00 0.28 11 ER1a ExonRegion 0 10.16 2.44 1.72 1.91 1.07 10.27 3.71 0.00 1.98 1.84 3.87 0.00 0.00 10.07 8.70 5.35 4.62 10.72 1.91 3.40 3.97 5.42 2.35 12 ER1b ExonRegion 0 38.94 14.64 4.66 9.00 11.77 39.24 26.21 1.38 4.94 9.63 20.49 0.00 0.00 34.76 47.00 36.26 21.79 38.43 14.02 11.49 18.95 29.59 11.16 13 ER1c ExonRegion 1 61.22 36.45 12.16 22.02 36.64 91.69 61.00 4.92 12.73 23.91 62.15 0.00 0.00 111.81 120.96 96.71 95.22 89.54 39.94 42.55 55.43 75.81 56.70 14 E1_Ae KnownBoundary 1 193.59 102.22 34.56 48.81 86.50 304.60 180.10 11.62 25.95 58.99 159.72 0.00 0.00 301.43 205.58 265.06 257.78 212.41 125.37 99.65 154.88 223.50 197.53 15 ER1d ExonRegion 1 100.48 56.94 21.01 29.98 53.51 178.66 101.76 6.91 16.06 35.06 100.51 0.82 0.22 234.96 180.29 174.93 160.49 133.74 72.35 65.75 101.48 142.37 115.93 16 ER1e ExonRegion 1 399.53 567.96 142.24 157.73 293.05 936.79 406.05 96.96 75.48 182.51 269.08 21.40 13.71 380.39 331.13 479.20 327.17 504.65 531.89 296.28 297.29 461.78 542.83 17 E1_Af KnownBoundary 1 1241.03 1685.95 344.37 381.27 907.05 2499.36 1112.55 271.09 195.08 436.45 685.75 27.76 50.48 729.95 869.15 1125.35 698.18 1069.12 1448.89 849.59 578.54 985.43 1314.93 18 ER1f ExonRegion 1 156.78 287.04 282.59 304.37 138.61 356.47 154.68 214.85 164.77 365.51 389.11 54.58 84.15 407.32 360.42 414.32 432.31 581.44 559.96 394.71 376.65 438.12 439.53 19 E1a_E2a KnownJunction 1 38.75 205.95 432.24 585.41 159.59 279.21 67.52 291.21 204.89 538.56 266.96 125.44 200.64 527.40 464.80 742.28 231.14 809.92 1054.15 469.54 317.35 762.60 870.87 20 E1a_E3a KnownJunction 1 23.34 56.83 167.26 152.76 25.13 35.21 21.02 130.70 86.69 65.97 123.66 42.76 132.13 293.78 365.04 346.66 165.87 364.71 406.60 173.09 38.43 212.85 283.58 21 E1a_E4a NovelJunction 0 0.00 3.35 7.78 8.69 0.00 4.54 0.00 0.00 1.27 3.33 7.42 0.00 0.00 7.89 8.90 3.67 0.00 3.86 21.18 5.94 0.00 8.88 4.35 22 ER2a ExonRegion 0 224.81 311.30 403.51 532.94 252.46 562.71 181.32 298.82 203.76 471.84 332.93 199.37 274.64 451.95 345.79 492.24 310.15 704.81 633.11 418.23 373.36 544.21 530.67 23 E2a_E3a KnownJunction 0 211.30 386.12 454.09 597.46 475.13 1196.70 455.01 338.33 218.75 591.55 378.25 279.09 245.11 509.21 333.89 305.73 337.07 494.58 578.93 415.01 398.90 573.82 369.28 24 E2a_E4a NovelJunction 0 6.15 16.31 4.58 19.74 3.65 60.48 11.26 20.00 11.66 16.20 7.63 0.00 8.28 2.41 10.75 0.00 8.88 24.46 19.95 3.26 14.95 14.02 15.71 25 I2 Intron 0 13.05 6.78 5.48 14.64 19.29 8.33 21.85 9.76 9.20 10.54 10.39 29.94 29.99 15.53 19.53 23.53 17.47 8.70 14.73 16.76 10.10 11.89 10.28 26 I2_SR1 SilentIntronRegion 0 16.12 10.56 5.90 15.24 13.58 7.40 25.21 10.10 13.80 13.61 14.94 36.00 30.49 21.90 20.76 39.44 21.71 14.32 18.74 24.06 20.09 18.75 15.59 27 I2_AR1 ActiveIntronRegion 0 8.64 6.79 5.42 15.44 20.35 16.32 33.15 16.24 10.92 16.17 10.75 46.43 41.80 16.96 25.35 22.60 25.10 9.38 21.86 19.73 9.40 12.36 14.16 28 I2_SR2 SilentIntronRegion 0 12.82 3.50 5.17 13.77 23.77 4.82 12.85 5.99 4.28 4.84 6.26 15.80 23.27 9.26 15.38 10.21 9.67 3.44 7.41 8.83 1.78 5.69 3.57 29 E3_Aa NovelBoundary 1 3.41 8.49 23.59 21.64 24.53 7.61 32.37 10.84 6.05 13.86 4.84 25.96 66.55 20.43 19.04 23.84 25.81 7.01 4.80 8.82 2.53 14.82 4.35 30 ER3a ExonRegion 0 396.29 731.40 647.76 777.79 335.74 1126.79 505.42 438.27 318.20 669.62 713.67 397.94 387.29 841.16 653.67 771.44 682.33 1011.03 936.23 589.94 541.33 771.33 676.62 31 E3_Ab KnownBoundary 0 529.28 1263.92 799.06 888.60 260.61 826.34 439.15 446.31 337.53 728.93 840.74 482.41 452.57 926.72 768.28 708.62 689.39 1039.11 876.35 625.81 616.91 711.59 549.14 32 ER3b ExonRegion 0 416.49 1075.25 718.92 850.81 309.03 731.47 344.97 428.80 336.91 696.42 719.66 700.57 561.13 945.93 722.22 716.99 721.44 934.65 981.74 648.86 617.64 738.94 536.91 33 E3a_E4a KnownJunction 0 390.37 954.57 620.76 818.11 297.88 607.95 378.12 418.87 306.57 584.49 684.23 730.44 564.90 938.32 694.24 625.73 700.89 615.09 907.23 580.56 539.75 744.05 525.24 34 E3a_E6b KnownJunction 1 52.38 183.06 155.49 118.97 71.31 234.86 120.21 62.97 37.59 134.87 46.85 106.08 54.54 108.84 111.63 42.04 66.20 207.23 151.82 122.27 39.17 167.17 89.38 35 I3_AR1 ActiveIntronRegion 1 10.58 6.44 9.91 10.34 9.59 9.17 7.83 6.91 4.53 12.04 8.05 0.36 23.45 25.72 27.32 102.79 14.03 13.86 29.20 9.75 22.59 39.93 60.94 36 ER4a ExonRegion 0 361.38 814.49 642.43 884.36 281.05 774.03 411.24 472.67 336.59 646.47 813.43 762.79 628.03 925.72 676.58 754.26 797.90 759.12 817.75 581.20 576.35 776.84 568.19 37 E4a_E5a KnownJunction 0 0.00 2.96 0.00 3.63 0.00 2.67 0.00 0.00 0.00 1.45 4.37 0.00 0.00 2.59 0.00 0.00 0.00 3.65 0.00 2.49 0.00 3.12 0.00 38 E4a_E6b KnownJunction 0 514.83 937.14 690.66 912.64 393.55 1053.48 498.38 469.80 347.83 673.54 951.82 860.23 792.81 950.80 826.75 794.32 867.97 786.99 954.00 689.28 617.53 779.56 689.22 39 E5_Aa NovelBoundary 1 97.35 111.76 67.21 69.29 113.50 142.99 299.38 68.31 51.10 59.77 56.70 57.62 116.55 56.98 51.92 161.92 99.77 71.38 87.63 188.75 107.99 45.13 107.30 40 ER5a ExonRegion 1 18.61 10.05 5.37 10.74 19.06 12.15 27.54 19.75 10.94 8.17 5.36 30.77 31.68 16.15 35.77 18.69 9.66 24.66 12.01 35.07 17.11 13.44 32.21 41 E5_Da NovelBoundary 0 72.09 100.57 436.83 317.68 132.68 67.86 147.68 308.63 246.21 334.83 28.01 6.15 36.20 13.95 64.40 95.62 121.08 342.57 38.97 186.19 76.54 16.29 122.41 42 E5a_E6b KnownJunction 0 0.00 0.00 0.00 3.63 0.00 0.00 1.55 2.30 1.36 1.05 5.05 7.65 0.00 5.36 5.19 0.00 0.00 2.16 0.00 6.26 3.15 0.00 8.19 43 E6_Aa NovelBoundary 0 102.02 91.76 203.16 225.81 87.01 54.00 151.39 225.66 162.73 179.55 53.01 32.71 27.76 58.63 40.30 150.90 156.43 186.79 120.85 191.18 48.19 59.21 138.12 44 ER6a ExonRegion 0 23.93 19.14 12.08 22.01 14.53 18.30 15.15 12.28 8.45 14.28 15.90 22.58 17.80 21.43 32.62 22.50 17.24 20.19 10.81 13.96 8.92 13.90 14.77 45 E6_Ab KnownBoundary 0 104.91 32.43 3.10 14.12 44.40 43.84 34.27 21.60 25.64 20.07 2.68 12.15 14.77 14.60 20.03 36.23 0.00 9.24 43.95 12.72 2.97 17.70 0.00 46 ER6b ExonRegion 0 371.35 603.78 951.26 1083.67 251.02 765.06 347.85 491.17 410.59 799.87 696.11 742.61 545.74 1026.05 880.95 953.18 716.67 1394.98 1163.08 763.48 575.75 936.93 788.77 47 E6a_E7a KnownJunction 0 648.34 732.90 1094.88 1184.56 324.79 721.80 389.07 569.33 453.58 876.99 833.05 891.74 642.33 1126.97 1116.02 848.07 923.98 1214.21 1217.07 820.06 648.54 842.14 777.66 48 E6a_E9a NovelJunction 0 0.00 12.50 20.31 1.90 0.00 6.93 12.41 2.30 0.00 5.75 0.00 0.00 0.00 4.83 5.56 0.00 0.00 27.73 3.95 2.62 3.15 0.00 0.00 49 ER6c ExonRegion 0 0.00 2.03 2.45 1.36 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.90 0.00 0.00 0.00 3.19 0.00 0.00 0.00 0.00 50 ER7a ExonRegion 0 413.12 654.50 1131.23 1065.89 210.30 546.38 300.81 496.95 387.66 827.70 629.57 633.13 534.82 910.55 785.85 739.20 700.85 1110.22 784.03 675.44 570.35 630.25 624.01 51 E7_Da KnownBoundary 0 13.93 18.42 35.42 29.97 20.03 7.10 35.55 37.91 8.59 16.04 7.16 18.91 54.05 7.12 4.45 15.81 8.23 16.83 3.58 6.52 0.00 3.00 4.27 52 E7a_E9a KnownJunction 0 563.73 908.59 1235.35 1249.13 312.56 691.53 355.95 456.25 377.11 865.76 615.73 534.92 436.01 980.58 979.79 642.82 646.56 1091.26 727.36 749.24 544.81 642.71 649.44 53 ER7b ExonRegion 0 7.05 14.69 17.32 6.63 1.02 2.83 8.57 6.06 2.57 3.91 9.25 2.36 5.42 8.31 8.95 3.27 6.57 7.05 6.97 3.19 0.82 0.77 2.72 54 E7_Db KnownBoundary 1 972.77 718.56 715.85 736.24 721.56 522.94 954.40 622.64 628.67 590.75 167.73 204.37 282.29 144.80 167.13 635.90 554.56 888.64 582.70 861.80 424.41 188.54 697.25 55 ER7c ExonRegion 0 0.67 2.46 0.00 0.07 0.34 0.17 0.97 0.00 0.23 0.00 0.00 1.52 0.42 0.90 1.99 0.00 1.13 0.15 0.00 0.00 0.47 0.00 0.00 56 I7_SR1 SilentIntronRegion 0 23.62 19.11 22.52 26.84 24.88 17.23 21.51 16.14 11.89 16.73 7.76 19.07 29.03 20.66 23.32 18.03 9.69 9.72 14.04 13.75 4.96 11.63 11.21 57 E8_Aa NovelBoundary 0 3.26 27.69 12.71 26.64 56.28 28.22 13.78 21.28 7.75 17.76 5.11 53.12 0.00 11.71 14.09 7.95 7.95 4.39 8.28 2.81 7.17 14.51 4.10 58 ER8a ExonRegion 0 0.00 0.60 0.56 0.26 0.00 0.89 0.39 0.79 0.00 0.50 0.00 0.23 0.00 0.66 0.47 0.16 0.00 0.70 0.60 1.32 0.00 0.00 0.56 59 E8_Da NovelBoundary 0 33.34 18.55 38.76 37.82 113.92 49.46 69.25 9.36 15.25 12.38 7.05 12.60 13.47 12.89 22.99 3.67 21.79 8.91 22.97 9.46 6.24 6.25 20.23 60 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 61 I8_SR2 SilentIntronRegion 0 72.37 18.30 26.84 29.25 25.69 14.85 14.70 11.59 13.25 22.05 11.60 13.52 14.90 18.86 20.89 28.53 9.90 22.05 26.76 14.67 9.24 24.38 20.28 62 ER9a ExonRegion 0 717.17 1140.80 1174.91 1190.90 462.07 1204.92 511.32 524.80 427.88 870.30 693.56 539.16 529.07 964.49 988.32 975.92 754.54 1490.29 1141.85 788.87 635.32 904.46 834.65 63 E9_Da KnownBoundary 0 601.07 767.63 1059.01 1046.65 387.78 948.89 423.92 450.87 300.11 668.78 442.53 232.88 254.20 665.49 648.37 406.30 482.37 794.50 706.75 561.90 413.11 382.65 550.68 64 ER9b ExonRegion 0 258.39 368.36 302.25 307.93 94.64 396.86 197.66 131.06 94.72 202.93 121.83 82.05 94.63 250.32 241.63 198.02 148.05 297.29 217.92 177.86 119.71 167.15 185.17 65 E9_Db KnownBoundary 0 446.30 319.35 77.47 53.71 110.36 194.43 169.50 24.27 21.44 25.33 66.28 60.92 46.75 12.66 18.17 51.78 30.48 25.58 55.63 8.44 27.18 22.53 39.61 66 ER9c ExonRegion 0 325.87 262.93 5.26 4.01 3.42 59.87 54.75 0.00 0.00 1.68 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.19 0.00 0.00 2.78 0.00 0.00 67 E9_Dc KnownBoundary 0 381.70 299.49 30.40 49.64 79.29 49.46 15.28 7.35 11.31 21.01 41.27 13.35 0.00 11.71 15.95 27.43 17.11 10.40 25.51 6.01 0.00 12.12 20.32 68 ER9d ExonRegion 0 137.96 129.02 196.94 281.70 54.47 72.48 43.86 74.90 45.08 80.87 35.67 61.77 42.58 39.43 90.19 63.82 35.44 43.71 122.57 39.03 17.71 83.66 56.50