Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 KCNN3 Gene 0 17.21 0.61 5.93 3.70 3.66 1.17 2.19 6.97 20.20 6.69 50.91 127.17 65.70 104.98 96.77 96.86 44.65 2.43 4.76 1.64 0.38 3.11 4.06 2 271915 Transcript 1 4.83 0.34 8.76 2.12 1.15 0.56 2.18 6.78 27.99 13.40 17.75 24.64 28.89 82.71 31.83 32.32 36.48 3.83 7.92 0.96 0.36 5.74 1.62 3 358505 Transcript 0 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.53 1.27 0.12 0.01 0.50 0.28 2.80 1.33 0.61 1.61 0.19 0.00 0.15 0.00 0.00 0.40 4 361147 Transcript 0 10.30 0.35 0.67 0.95 2.82 0.55 0.47 1.21 6.09 0.90 90.97 91.93 44.34 50.77 64.47 84.54 40.64 0.00 1.17 0.21 0.00 0.69 0.83 5 ER1a ExonRegion 1 2.91 0.68 6.66 2.98 2.29 1.12 2.50 6.87 17.85 5.60 10.12 19.58 23.52 72.88 30.77 23.28 32.65 2.19 6.25 1.92 0.72 3.09 3.24 6 E1a_E4a KnownJunction 0 6.74 0.00 10.85 1.27 0.00 0.00 1.85 6.70 38.14 21.19 25.37 29.71 34.25 92.53 32.88 41.36 40.30 5.47 9.60 0.00 0.00 8.39 0.00 7 ER2a ExonRegion 0 0.00 0.00 0.00 0.00 0.37 0.00 0.00 1.06 2.53 0.23 0.02 0.99 0.57 5.61 2.65 1.23 3.21 0.38 0.00 0.29 0.00 0.00 0.81 8 E2a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 E3_Aa NovelBoundary 1 67.35 0.00 0.00 2.06 12.56 0.00 0.00 2.55 3.24 0.00 108.55 23.26 8.28 34.55 62.67 289.92 56.38 0.00 0.00 0.00 0.00 0.00 0.00 10 ER3a ExonRegion 1 13.62 0.00 0.00 1.39 2.75 0.00 0.91 0.05 1.26 0.58 76.34 74.47 28.68 39.13 85.09 124.41 28.78 0.00 0.00 0.00 0.00 0.00 1.01 11 E3_Da NovelBoundary 0 0.00 0.00 6.83 0.00 0.00 0.00 5.56 2.38 6.37 0.00 0.00 0.00 6.82 2.12 5.19 0.00 16.64 0.00 0.00 0.00 0.00 0.00 0.00 12 E3a_E4a KnownJunction 0 6.52 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 151.35 91.08 66.39 41.09 66.75 74.60 64.89 0.00 0.00 0.00 0.00 0.00 0.00 13 ER4a ExonRegion 0 5.82 3.07 7.03 4.23 2.84 0.00 2.97 11.45 39.77 16.04 123.38 166.86 89.60 192.58 239.56 366.31 93.87 5.18 7.66 3.88 0.00 6.06 8.63 14 E4a_E5a KnownJunction 0 16.82 0.00 6.89 7.03 8.15 0.00 2.25 17.05 31.02 15.50 67.96 151.85 72.72 118.31 86.04 199.26 81.81 4.19 17.32 3.26 0.00 2.63 4.35 15 I4_AR5 ActiveIntronRegion 0 0.00 0.00 2.25 0.52 0.59 0.00 0.00 2.14 0.30 1.03 1.62 28.23 10.13 1.59 5.51 9.51 5.74 1.03 0.00 0.00 0.00 0.54 0.00 16 ER5a ExonRegion 0 22.01 0.50 11.31 5.22 4.89 1.34 2.67 10.13 25.96 9.99 102.18 228.55 149.25 160.99 161.67 163.77 73.43 4.39 4.05 2.81 0.00 2.96 7.28 17 E5a_E6a KnownJunction 0 10.59 0.00 4.29 0.00 0.00 0.00 0.00 0.00 15.25 10.26 46.70 148.70 107.14 94.94 145.00 90.23 27.02 4.10 0.00 6.20 0.00 3.12 0.00 18 I5 Intron 0 3.00 0.72 2.26 4.15 1.74 0.32 1.76 3.23 7.23 2.31 3.98 41.85 18.13 7.87 13.67 18.77 7.47 0.65 1.46 0.46 0.07 0.09 0.67 19 I5_SR1 SilentIntronRegion 0 2.26 0.61 2.04 3.82 1.55 0.34 1.38 2.69 7.18 2.03 3.95 44.73 17.17 6.94 13.96 23.20 9.74 1.39 1.48 0.44 0.05 0.10 0.34 20 I5_AR2 ActiveIntronRegion 1 1.02 0.33 4.42 4.98 6.50 0.30 3.61 3.53 8.26 3.51 4.65 50.83 7.45 9.17 17.43 21.86 4.97 0.01 1.04 1.74 0.36 0.68 1.44 21 I5_AR3 ActiveIntronRegion 0 0.26 0.00 2.45 3.15 1.51 0.00 4.72 6.37 11.81 2.51 7.01 39.24 9.38 4.87 15.78 13.37 6.81 1.85 0.00 0.00 0.00 0.00 0.00 22 I5_AR4 ActiveIntronRegion 1 0.00 0.00 2.45 4.21 0.00 0.00 7.10 3.61 12.58 0.42 8.79 44.08 6.82 6.94 18.73 19.18 1.20 1.85 0.00 0.00 0.00 0.00 0.00 23 I5_SR2 SilentIntronRegion 0 3.26 0.29 3.07 4.99 2.19 0.66 1.96 4.11 10.12 3.35 3.72 37.28 20.04 8.76 15.85 20.09 6.67 0.14 1.81 0.21 0.14 0.07 0.64 24 I5_AR5 ActiveIntronRegion 1 7.63 2.63 2.20 8.97 2.13 0.00 4.20 5.40 11.47 3.17 1.60 112.43 55.28 6.41 12.62 14.00 8.02 0.00 0.67 0.86 0.00 0.28 1.72 25 I5_SR3 SilentIntronRegion 0 3.16 0.89 2.04 3.22 1.30 0.20 1.48 2.95 5.64 1.96 4.34 35.33 15.66 8.37 12.59 16.02 6.64 0.55 1.50 0.47 0.00 0.03 0.69 26 I5 Intron 0 1.73 0.19 0.66 0.81 0.66 0.13 0.88 1.12 3.65 1.18 5.21 30.73 14.10 10.54 8.31 10.94 6.97 0.64 0.88 0.41 0.00 0.30 0.45 27 I5_SR1 SilentIntronRegion 0 1.69 0.16 0.75 0.80 0.71 0.09 1.12 1.04 3.43 1.38 3.82 26.22 12.35 7.89 7.76 10.50 7.24 0.76 1.16 0.23 0.00 0.21 0.55 28 I5_AR1 ActiveIntronRegion 0 0.63 0.00 1.23 1.36 0.00 0.00 0.13 1.73 2.10 1.15 10.24 29.01 21.11 6.82 17.41 9.51 0.00 0.00 0.00 0.00 0.00 0.00 0.00 29 I5_AR2 ActiveIntronRegion 0 2.12 0.00 1.35 1.36 0.00 0.00 0.00 1.73 2.47 2.29 11.60 29.44 16.88 7.96 12.48 10.11 1.65 0.00 0.00 0.00 0.00 0.00 0.00 30 I5_AR3 ActiveIntronRegion 0 2.12 0.00 2.45 1.36 0.00 0.00 0.00 1.73 2.47 2.87 11.84 23.81 17.00 8.73 11.24 14.12 3.30 0.00 0.00 0.00 0.00 0.00 0.00 31 I5_AR4 ActiveIntronRegion 0 2.12 0.00 2.45 1.36 0.00 0.00 0.00 1.73 1.98 3.44 10.24 24.25 9.38 10.72 7.83 11.29 4.95 0.00 0.00 0.00 0.00 0.00 0.00 32 I5_AR5 ActiveIntronRegion 0 1.70 0.00 1.80 1.14 1.70 0.47 0.84 2.42 4.55 1.82 2.97 33.39 21.41 8.93 10.52 14.01 8.53 1.05 2.02 0.54 0.00 0.00 0.00 33 I5_SR2 SilentIntronRegion 0 1.75 0.20 0.50 0.80 0.61 0.13 0.76 1.27 3.28 1.08 5.57 36.97 15.51 10.63 8.12 10.36 5.97 0.33 0.60 0.48 0.00 0.43 0.32 34 I5_AR7 ActiveIntronRegion 0 2.12 0.00 0.00 0.00 0.00 0.00 0.00 3.46 4.53 0.96 13.53 46.90 21.89 24.90 14.51 20.80 13.20 0.00 0.00 2.13 0.00 0.00 0.00 35 I5_SR3 SilentIntronRegion 0 2.15 0.39 0.76 1.01 0.61 0.28 0.61 0.59 5.13 0.72 9.20 27.12 13.46 18.36 9.89 14.01 9.35 0.94 0.49 0.87 0.00 0.40 0.67 36 ER6a ExonRegion 0 20.54 0.00 6.38 4.30 4.86 1.59 3.80 6.52 20.00 8.32 89.14 226.78 127.06 186.74 187.15 180.40 43.33 0.74 6.73 2.02 0.00 4.15 7.18 37 E6a_E7a KnownJunction 0 66.75 0.00 5.62 5.36 0.00 9.43 0.00 20.66 17.68 14.51 91.65 202.57 134.24 144.56 175.91 175.34 41.14 1.91 13.74 0.00 0.00 0.00 11.78 38 ER7a ExonRegion 0 43.76 0.00 5.29 4.05 2.31 0.50 0.23 12.13 24.58 10.13 89.00 238.43 123.42 166.07 218.56 180.79 58.76 2.16 6.40 3.07 0.00 3.87 3.84 39 E7a_E8a KnownJunction 0 120.24 0.00 8.16 3.73 0.00 0.00 2.21 14.29 35.65 16.09 97.34 333.11 143.01 216.32 248.97 223.79 74.52 2.03 4.14 2.43 0.00 8.57 4.35 40 ER8a ExonRegion 0 93.33 2.18 6.25 7.95 9.62 0.73 3.77 14.80 37.97 13.87 124.32 362.36 149.13 202.58 272.13 215.22 86.70 7.43 14.23 1.81 0.00 4.36 6.38 41 E8a_E9a KnownJunction 1 30.45 3.09 9.05 6.19 0.00 0.00 6.45 10.10 27.00 17.16 98.45 492.46 210.54 186.06 290.25 152.01 74.15 3.61 12.33 3.07 0.00 2.82 0.00 42 ER9a ExonRegion 0 18.72 0.46 10.70 4.85 8.18 1.18 6.15 9.14 32.04 11.55 131.46 446.55 179.29 176.01 284.28 183.63 72.48 3.91 3.55 3.92 0.00 7.14 1.97 43 E9a_E10a KnownJunction 0 40.16 0.00 18.48 8.62 15.96 2.10 1.63 12.36 37.90 7.49 145.46 469.50 185.70 181.59 300.64 270.53 93.69 3.90 0.00 2.62 0.00 14.94 6.83 44 ER10a ExonRegion 0 52.72 0.80 7.62 6.39 4.57 0.22 2.13 8.14 27.64 8.41 79.87 283.98 114.74 143.77 201.36 163.69 60.37 2.92 5.03 0.46 0.00 6.79 4.62 45 E10_Da KnownBoundary 1 40.90 3.35 8.57 3.86 12.05 2.84 0.00 4.07 22.57 5.83 89.60 230.78 41.56 144.39 47.47 120.74 69.00 5.72 0.00 2.49 0.00 3.12 3.67 46 ER10b ExonRegion 0 16.80 0.37 4.24 4.97 6.05 3.65 2.26 6.71 25.82 7.68 60.75 162.74 61.82 128.16 69.09 119.75 53.60 2.33 2.63 1.08 1.06 2.38 4.98 47 E10_Db KnownBoundary 1 0.00 0.00 1.30 5.63 0.00 2.44 1.90 8.63 36.20 5.91 43.06 112.24 39.93 125.91 53.65 109.63 55.73 0.00 9.04 3.26 0.00 6.25 0.00 48 ER10c ExonRegion 0 10.75 1.04 2.02 1.47 5.73 1.65 0.52 3.58 17.01 2.11 45.21 110.23 37.94 72.09 41.57 54.63 28.26 0.00 3.50 0.64 0.00 2.06 1.50 49 IG35_AR9 ActiveIntergenicRegion 0 4.20 1.80 4.76 6.59 5.89 2.56 4.12 7.39 32.27 8.07 66.55 229.72 111.35 96.67 45.33 84.25 43.10 1.51 4.64 1.39 0.14 6.42 7.12 50 IG35_SR9 SilentIntergenicRegion 0 0.00 2.03 4.10 1.50 7.09 0.00 2.12 2.94 10.44 2.47 36.24 141.14 96.15 53.11 36.85 65.83 18.65 0.00 0.00 0.00 0.00 3.54 3.67 51 IG35_SR8 SilentIntergenicRegion 0 3.58 1.17 7.63 7.36 4.52 3.60 4.44 3.94 33.74 10.83 58.19 165.63 90.48 87.87 54.51 73.54 39.71 1.43 3.91 1.90 0.00 4.35 1.89 52 IG35_AR8 ActiveIntergenicRegion 0 4.72 2.02 4.20 6.66 7.73 1.49 3.88 5.61 34.26 5.78 59.67 197.44 128.08 72.63 54.14 62.56 39.09 0.08 3.45 2.80 0.00 3.88 2.25 53 IG35_AR7 ActiveIntergenicRegion 0 9.04 0.44 8.39 7.49 14.46 2.99 5.94 8.79 34.55 10.90 62.72 204.56 156.76 84.30 62.90 60.08 30.07 0.40 2.98 0.77 0.00 5.72 4.67 54 IG35_SR6 SilentIntergenicRegion 0 11.71 0.98 11.75 13.07 17.61 3.92 7.59 12.38 58.59 16.92 78.50 343.92 225.21 84.18 91.78 91.93 41.82 1.06 3.86 1.65 0.27 8.77 6.37 55 IG35_AR6 ActiveIntergenicRegion 0 8.93 2.18 10.57 13.82 14.74 3.36 5.68 12.77 42.22 17.61 57.28 215.00 133.08 66.84 89.90 71.31 23.86 0.59 4.10 2.32 0.00 5.69 2.57 56 IG35_AR5 ActiveIntergenicRegion 0 2.41 1.47 8.12 10.18 10.04 2.29 1.33 7.65 29.64 6.89 37.86 134.53 102.86 44.01 42.85 25.38 18.03 0.00 1.77 0.30 0.00 4.76 2.45 57 IG35_SR5 SilentIntergenicRegion 0 3.76 2.70 4.14 6.83 9.34 4.15 1.80 12.61 38.44 13.36 37.66 75.54 100.27 37.49 26.69 27.00 10.01 0.41 1.62 0.52 0.00 6.47 3.36 58 IG35_AR4 ActiveIntergenicRegion 0 1.58 0.48 5.28 6.79 9.60 3.25 2.95 8.55 38.80 7.91 40.66 52.62 35.01 27.72 21.97 20.44 11.80 2.15 2.32 0.63 0.21 5.15 2.80 59 IG35_SR4 SilentIntergenicRegion 0 13.83 2.79 10.70 11.02 15.91 4.46 3.67 15.73 43.74 13.14 50.69 54.96 59.40 27.41 42.45 31.51 16.64 0.87 5.65 0.63 0.00 5.86 2.87 60 IG35_AR3 ActiveIntergenicRegion 0 7.91 2.76 13.77 15.40 17.23 4.49 3.86 14.08 36.26 12.37 26.48 20.55 27.40 15.54 35.69 14.36 8.85 0.60 1.63 0.61 0.00 4.43 5.00 61 IG35_AR2 ActiveIntergenicRegion 0 2.12 1.41 3.18 6.19 5.63 0.00 1.35 7.08 14.19 3.22 9.28 6.73 3.29 2.56 6.06 1.40 2.59 0.43 0.77 0.00 0.00 0.33 0.00 62 IG35_SR2 SilentIntergenicRegion 0 2.43 0.83 3.60 2.08 5.22 0.45 1.27 4.22 15.68 2.85 6.26 6.36 2.97 3.84 6.07 2.76 1.84 0.51 0.68 0.13 0.00 0.52 1.82