Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 EFNA3 Gene 0 6.62 35.39 49.60 43.96 24.97 56.39 12.09 83.42 73.95 69.49 39.24 3.51 1.75 4.41 6.40 2.70 5.99 50.43 31.25 35.79 5.44 3.73 3.41 2 436288 Transcript 0 0.00 0.00 0.00 0.05 0.00 0.20 0.00 0.00 0.00 0.00 0.04 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3 418360 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 368408 Transcript 0 0.00 5.29 0.00 0.00 0.00 4.95 2.65 4.49 2.84 2.64 1.16 0.00 0.00 0.00 1.45 0.00 0.00 0.00 1.59 3.40 0.00 0.00 0.00 5 470294 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 1.80 1.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 6 498667 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 ER1a ExonRegion 0 0.00 0.00 0.00 0.11 0.00 0.41 0.00 0.00 0.00 0.00 0.09 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 9 Ix_AR1 ActiveIntronRegion 0 0.00 0.00 0.29 0.00 0.35 0.00 1.45 4.24 2.83 0.00 4.30 0.00 1.61 2.78 4.02 3.58 4.15 1.55 2.95 0.00 1.21 7.53 3.13 10 E2_Aa NovelBoundary 0 0.00 12.63 0.00 1.53 8.15 10.33 0.00 3.70 1.19 5.02 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16.50 0.00 0.00 0.00 2.57 0.00 11 ER2a ExonRegion 0 0.00 6.81 4.56 3.13 2.12 14.23 1.18 9.28 7.48 12.49 0.11 0.00 0.00 0.00 0.00 0.00 0.00 6.16 9.09 7.16 0.00 0.90 0.76 12 E2a_E3a KnownJunction 0 0.00 5.26 23.92 20.01 0.00 18.68 3.75 82.35 41.93 73.71 2.21 0.00 0.00 0.00 0.00 0.00 0.00 35.61 26.54 20.58 0.00 8.02 0.00 13 I2_AR1 ActiveIntronRegion 0 0.55 0.53 3.41 0.00 1.53 2.12 1.80 0.00 3.89 2.44 8.86 2.04 0.00 1.08 5.61 3.41 1.89 3.16 0.79 2.44 1.24 0.00 0.00 14 ER3a ExonRegion 0 1.97 21.45 51.03 33.95 9.27 46.71 8.00 73.11 69.56 75.91 27.42 1.16 2.14 2.97 5.00 4.79 3.72 54.79 35.14 34.75 5.75 4.85 3.47 15 E3a_E5a KnownJunction 0 9.93 46.70 78.50 65.99 32.34 52.24 13.51 115.83 123.47 94.72 32.64 0.00 6.82 4.83 8.90 0.00 0.00 93.56 45.37 59.00 14.09 5.94 4.10 16 ER4a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.79 0.00 0.00 0.00 1.80 1.93 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 17 ER4b ExonRegion 0 0.00 0.07 3.12 0.03 2.27 3.85 0.00 2.28 3.91 3.00 16.38 0.00 0.00 0.00 0.00 0.00 1.40 1.17 1.38 3.65 0.00 0.00 1.25 18 E4a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.42 2.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 19 ER5a ExonRegion 0 6.06 37.25 66.50 63.42 24.32 40.07 10.93 104.73 115.54 107.53 66.45 0.00 4.76 4.28 4.40 4.50 5.80 79.54 31.03 65.76 4.41 3.76 3.11 20 E5a_E6a KnownJunction 0 3.78 44.20 44.20 61.06 31.41 37.88 10.38 100.59 90.10 94.50 63.65 0.00 0.00 2.47 13.35 0.00 8.32 65.95 39.62 49.54 5.68 2.88 3.24 21 E5a_E7a KnownJunction 0 0.00 0.00 13.10 16.61 0.00 0.00 8.88 16.18 37.53 26.81 14.90 0.00 0.00 0.00 0.00 0.00 0.00 13.97 8.38 9.27 0.00 0.00 4.35 22 ER6a ExonRegion 0 5.94 26.91 49.69 37.36 27.07 60.37 4.91 82.72 60.96 67.89 47.70 0.00 0.18 4.46 5.58 2.93 9.48 51.07 21.81 37.53 9.69 4.89 1.66 23 E6a_E7a KnownJunction 0 10.74 35.91 75.31 47.78 51.95 91.54 10.25 97.63 73.26 86.39 43.17 0.00 0.00 2.47 8.90 7.60 4.77 84.27 12.33 23.91 3.15 2.39 0.00 24 ER7a ExonRegion 0 11.58 64.26 77.12 73.89 39.49 87.11 22.76 121.67 106.65 100.23 59.89 5.29 3.82 5.96 7.66 4.63 9.99 94.20 41.99 51.91 6.73 5.79 4.64 25 E7_Da KnownBoundary 0 24.75 68.94 72.82 84.87 96.60 106.25 27.12 126.10 96.96 82.73 73.39 0.00 0.00 14.01 22.37 0.00 13.37 54.55 30.68 36.18 6.30 5.94 4.10 26 ER7b ExonRegion 0 12.70 54.29 65.78 64.52 49.89 85.78 15.78 102.30 102.81 87.67 49.11 8.81 5.33 7.29 13.62 0.00 8.84 52.99 23.38 35.27 6.09 2.33 5.87 27 E7_Db KnownBoundary 0 20.97 71.90 90.51 75.38 37.35 88.13 20.49 110.49 135.85 105.49 45.01 5.55 6.82 2.41 19.66 0.00 9.54 66.91 38.50 40.97 6.30 3.06 4.35 28 ER7c ExonRegion 0 9.59 41.80 57.59 52.96 36.72 71.50 14.67 113.53 96.65 82.47 49.65 6.45 0.52 7.11 10.82 1.94 7.39 41.95 43.21 43.41 7.98 3.88 4.49 29 ER7d ExonRegion 0 0.00 5.29 0.00 0.00 0.00 4.95 2.65 4.49 2.84 2.64 1.16 0.00 0.00 0.00 1.45 0.00 0.00 0.00 1.59 3.40 0.00 0.00 0.00