Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 GABPB2 Gene 0 48.82 26.67 26.75 41.91 48.70 24.71 34.53 25.94 22.09 24.00 14.43 31.73 31.48 36.98 38.84 46.19 31.04 26.78 21.93 25.03 22.68 21.96 30.24 2 462520 Transcript 0 4.20 1.74 1.82 5.67 2.29 1.18 1.63 1.45 1.95 4.19 2.55 7.39 3.70 4.39 4.95 11.24 5.34 4.91 3.58 1.59 7.29 1.27 7.31 3 368917 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 4 446567 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.18 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 368918 Transcript 0 57.67 29.23 28.50 44.31 54.22 25.62 36.53 26.56 20.61 21.74 12.57 26.55 26.67 29.84 34.68 38.25 25.89 19.92 20.12 23.26 17.15 22.04 26.31 6 489549 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 7 486076 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.46 1.37 2.05 0.00 0.00 0.00 5.69 0.00 13.00 0.00 0.00 0.00 3.15 0.00 0.00 8 368916 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 467551 Transcript 0 0.00 0.00 0.00 2.00 0.00 2.67 2.08 4.23 3.44 1.67 2.47 0.00 6.82 2.65 4.45 4.36 0.00 3.52 0.00 0.00 0.00 0.00 0.00 10 IG9 Intergenic 0 1.71 9.88 6.65 9.04 13.54 10.76 11.25 9.90 9.31 10.38 3.91 3.76 2.23 6.13 6.74 5.43 2.00 34.20 10.31 20.67 2.68 0.42 4.75 11 IG9_AR1 ActiveIntergenicRegion 0 1.73 9.95 6.71 9.11 13.65 10.85 11.34 9.98 9.38 10.46 3.94 3.79 2.25 6.18 6.79 5.47 2.02 34.47 10.40 20.83 2.70 0.43 4.79 12 ER1a ExonRegion 0 3.61 2.64 2.22 0.50 0.00 0.00 5.93 2.50 2.01 0.68 0.36 15.87 2.61 4.03 4.51 3.85 5.38 5.89 6.13 3.62 7.84 0.62 2.83 13 ER1b ExonRegion 0 3.69 8.01 12.02 8.86 12.22 8.55 9.41 16.35 10.16 8.14 3.87 6.96 0.73 6.71 8.44 11.20 6.33 28.97 11.66 12.79 12.88 4.55 9.37 14 E1_Ac KnownBoundary 0 3.19 0.00 12.18 4.13 8.40 19.70 6.18 7.76 3.50 5.96 1.95 0.00 0.00 7.00 4.57 7.60 0.00 6.92 13.27 9.08 3.03 3.12 15.19 15 E1_Ad KnownBoundary 0 17.93 21.11 15.02 20.24 40.41 33.79 38.55 12.16 23.73 17.65 25.37 32.11 0.00 45.15 45.49 117.58 48.15 43.90 27.29 31.00 36.08 40.35 60.86 16 ER1c ExonRegion 0 10.58 6.85 17.93 17.31 20.12 30.43 24.03 7.62 19.26 11.55 16.32 20.36 0.00 35.79 26.22 68.80 28.97 38.39 19.70 21.91 28.89 20.06 46.12 17 ER1d ExonRegion 0 14.49 7.41 13.90 28.91 22.62 19.71 20.68 17.60 17.92 25.19 23.28 17.32 9.42 28.43 31.31 83.63 33.34 34.45 27.91 18.53 35.33 17.89 59.91 18 E1_Da NovelBoundary 0 0.00 0.00 4.61 1.93 7.05 8.18 9.89 3.53 8.45 4.75 2.68 0.00 6.49 2.47 0.00 12.05 20.57 12.31 3.95 17.77 11.80 0.00 0.00 19 E1a_E2a KnownJunction 0 0.00 0.00 1.63 2.06 0.00 0.00 0.00 0.00 0.00 1.67 0.00 0.00 0.00 4.41 0.00 4.36 0.00 0.00 0.00 0.00 5.87 0.00 0.00 20 E1a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.46 1.37 2.05 0.00 0.00 0.00 5.69 0.00 13.00 0.00 0.00 0.00 3.15 0.00 0.00 21 E1a_E3b KnownJunction 0 0.00 0.00 9.40 6.99 0.00 0.00 6.98 6.53 4.05 7.49 17.69 13.20 0.00 7.53 0.00 8.29 21.69 0.00 0.00 6.39 28.79 5.02 4.35 22 I1 Intron 0 16.84 10.16 16.02 19.16 31.25 7.76 7.63 14.19 9.95 9.50 1.58 8.90 9.09 3.25 9.91 18.34 9.43 17.61 9.91 15.52 8.65 2.34 16.62 23 I1_AR1 ActiveIntronRegion 0 2.49 2.39 5.73 8.76 4.20 1.44 2.08 1.01 2.17 4.02 0.76 5.59 1.52 2.21 5.62 7.00 3.88 5.74 2.50 3.31 2.59 1.63 14.98 24 I1_SR1 SilentIntronRegion 0 19.00 11.34 17.58 20.74 35.33 8.71 8.47 16.18 11.13 10.33 1.70 9.40 10.23 3.41 10.57 20.06 10.27 19.41 11.03 17.36 9.56 2.45 16.89 25 E2_Aa NovelBoundary 0 13.41 10.26 4.73 8.19 11.04 0.00 3.89 1.68 1.77 5.08 0.00 6.30 20.13 2.47 0.00 11.79 4.68 4.93 19.48 7.41 5.75 0.00 16.22 26 ER2a ExonRegion 0 9.43 4.31 3.43 16.38 9.17 4.72 0.57 3.31 2.56 8.75 5.17 13.68 12.18 9.10 15.29 25.83 11.32 6.54 8.19 2.74 15.46 4.46 26.43 27 E2_Da NovelBoundary 1 11.34 6.71 5.20 21.31 16.89 16.30 2.25 2.51 3.24 5.75 0.00 6.30 6.82 0.00 0.00 36.49 0.00 11.03 0.00 9.59 0.00 0.00 31.84 28 E2a_E3b KnownJunction 0 3.78 0.00 0.00 3.73 0.00 0.00 0.00 0.00 3.24 5.67 4.69 0.00 0.00 0.00 0.00 10.94 4.68 7.21 0.00 0.00 0.00 0.00 0.00 29 I2 Intron 0 11.33 7.11 6.71 16.19 18.51 4.94 5.35 5.53 5.70 4.42 1.69 9.01 10.62 3.49 7.09 10.06 5.41 7.19 4.87 5.96 2.73 4.85 9.73 30 I2_SR1 SilentIntronRegion 0 10.31 5.60 5.40 10.14 18.48 5.69 2.99 4.20 5.09 2.10 0.98 4.56 5.74 2.42 5.43 10.26 4.74 7.47 3.85 4.55 2.81 3.65 8.32 31 I2_AR1 ActiveIntronRegion 0 13.30 10.01 9.24 27.83 18.60 3.51 9.88 8.09 6.87 8.86 3.05 17.56 19.98 5.55 10.31 9.71 6.69 6.68 6.84 8.68 2.58 7.18 12.46 32 E3_Aa NovelBoundary 0 23.86 0.00 1.83 9.46 3.99 5.22 4.42 1.73 9.98 2.95 0.00 24.61 0.00 7.42 6.30 3.42 8.42 0.00 9.60 15.08 8.96 6.00 8.62 33 ER3a ExonRegion 1 3.01 7.33 4.60 4.75 3.89 1.50 0.84 4.71 3.86 4.41 5.27 27.55 1.71 8.22 5.80 5.94 9.70 3.47 1.83 3.80 10.15 2.53 0.18 34 E3_Ab KnownBoundary 1 10.15 15.66 9.76 19.81 4.16 7.84 2.12 9.69 9.29 7.79 6.95 61.67 6.49 12.36 8.90 8.72 4.11 21.10 3.48 6.52 25.14 5.88 0.00 35 ER3b ExonRegion 0 24.33 8.13 29.10 36.44 25.73 11.59 15.08 28.25 23.52 28.72 31.05 30.87 44.62 61.32 47.42 88.19 46.37 42.12 28.01 25.31 43.64 37.72 49.98 36 E3_Da NovelBoundary 0 10.30 0.00 6.74 14.48 3.90 2.27 15.10 6.04 9.49 7.20 4.26 0.00 0.00 0.00 9.27 3.50 4.77 3.77 4.52 8.63 10.93 3.00 3.67 37 E3a_E4a KnownJunction 0 2.89 0.00 0.00 1.70 0.00 0.00 0.00 2.42 0.00 0.00 4.53 0.00 8.12 2.24 9.27 0.00 4.49 2.57 7.72 0.00 11.37 6.18 8.54 38 E3a_E5a KnownJunction 1 17.11 11.51 13.87 20.21 14.26 21.12 8.17 14.42 12.96 32.13 19.85 30.31 47.56 38.50 19.41 95.19 21.32 49.50 36.24 14.57 9.02 24.86 35.08 39 I3 Intron 0 6.90 3.01 3.25 10.85 19.83 5.44 13.74 3.82 2.18 3.55 0.00 4.23 3.44 2.27 3.14 5.29 1.96 5.18 0.94 3.79 1.31 2.47 0.87 40 I3_SR1 SilentIntronRegion 0 6.97 3.05 3.29 10.98 19.91 5.44 13.82 3.86 2.21 3.59 0.00 4.28 3.48 2.29 3.17 5.35 1.98 5.24 0.96 3.83 1.32 2.50 0.88 41 E4_Aa NovelBoundary 0 3.78 11.84 4.67 15.42 82.60 10.96 24.95 6.00 4.54 7.39 0.00 6.30 0.00 2.83 0.00 4.36 0.00 1.99 3.95 9.46 0.00 3.12 4.35 42 ER4a ExonRegion 0 2.82 0.00 0.00 3.72 0.00 1.83 1.99 1.12 0.10 0.07 2.98 0.99 7.04 1.39 6.10 2.04 1.17 1.39 5.44 2.39 5.74 2.82 10.71 43 E4_Da NovelBoundary 0 11.34 11.91 4.79 22.34 11.63 0.00 6.49 6.45 3.21 2.87 0.00 0.00 0.00 6.95 18.54 0.00 0.00 2.03 4.05 5.75 0.00 18.49 0.00 44 E4a_E5a KnownJunction 0 3.26 0.00 0.00 3.40 0.00 0.00 3.97 0.00 0.00 0.00 2.42 0.00 0.00 2.47 5.32 4.36 0.00 0.00 0.00 5.69 3.15 0.00 15.45 45 E4a_E6a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 46 I4 Intron 0 13.82 5.65 7.70 22.24 18.31 4.90 14.50 7.68 4.73 5.45 1.99 9.18 9.25 3.08 5.55 5.50 4.07 4.16 2.46 4.38 2.72 3.75 4.23 47 I4_SR1 SilentIntronRegion 0 13.85 5.66 7.71 22.28 18.35 4.91 14.52 7.69 4.74 5.46 1.99 9.20 9.27 3.09 5.57 5.51 4.08 4.17 2.46 4.38 2.73 3.75 4.24 48 E5_Aa NovelBoundary 1 87.27 17.63 23.68 40.85 91.77 5.00 31.40 18.48 20.17 23.88 5.11 13.05 0.00 2.47 13.35 70.58 8.70 24.62 26.92 14.96 11.12 10.16 40.55 49 ER5a ExonRegion 0 28.47 21.51 25.46 41.28 37.81 27.58 24.07 26.27 18.37 36.67 23.25 33.53 39.92 69.25 57.18 64.27 50.61 48.05 14.73 28.28 43.69 24.87 38.05 50 E5_Da NovelBoundary 0 3.70 0.00 5.59 10.45 24.53 5.56 3.53 15.40 13.66 5.53 2.68 6.30 0.00 0.00 0.00 7.18 13.18 4.48 3.95 6.33 5.56 0.00 4.35 51 E5a_E6a KnownJunction 0 27.41 27.63 19.04 38.22 35.48 25.55 24.60 26.33 13.83 43.09 23.64 23.56 56.49 89.88 37.46 70.58 52.83 42.16 24.38 18.34 61.34 25.72 30.65 52 E6_Aa NovelBoundary 0 10.52 6.05 8.16 20.31 24.53 5.51 11.31 4.44 12.09 5.53 2.68 0.00 0.00 4.94 5.44 3.85 4.58 1.99 3.86 6.52 4.70 0.00 4.35 53 ER6a ExonRegion 0 42.60 18.41 26.18 45.97 49.09 29.47 28.77 23.57 29.01 38.72 33.07 36.76 37.35 68.89 54.33 89.43 50.11 49.79 35.39 30.44 49.96 26.93 35.56 54 E6_Ab KnownBoundary 0 67.20 33.28 42.25 62.63 54.67 27.82 17.75 17.37 47.48 38.12 31.53 32.11 35.39 72.99 74.17 73.91 53.76 58.91 17.60 37.01 70.61 27.92 46.61 55 ER6b ExonRegion 0 43.81 30.84 36.91 63.70 36.96 27.85 23.09 34.41 42.57 32.21 36.20 58.63 39.13 116.41 76.10 125.68 67.29 64.08 25.89 30.40 60.13 40.06 64.79 56 E6a_E7a KnownJunction 0 89.87 24.01 54.02 49.04 38.46 17.55 24.73 29.86 44.39 33.36 58.17 82.98 66.72 92.18 40.67 114.76 88.73 68.65 48.94 54.59 65.11 34.90 57.71 57 ER7a ExonRegion 0 55.92 24.05 28.43 42.70 43.86 10.37 24.12 23.96 28.31 32.01 33.70 45.26 41.92 76.31 62.69 121.81 76.44 55.40 29.46 31.25 60.60 51.99 52.68 58 E7_Da KnownBoundary 0 36.75 12.30 25.78 54.04 53.31 18.74 11.13 35.94 27.14 40.53 36.96 26.41 6.98 82.11 63.91 87.50 69.28 50.49 21.65 25.89 39.04 28.84 58.64 59 ER7b ExonRegion 0 62.60 19.47 20.87 48.84 51.21 26.73 36.98 19.47 24.96 21.96 34.70 40.46 28.19 90.60 58.76 87.76 70.65 31.09 18.12 25.04 50.91 35.59 50.16 60 E7b_E8a KnownJunction 0 63.12 3.29 10.41 36.29 32.51 37.42 40.01 16.31 29.11 20.52 19.64 30.46 6.82 38.08 35.35 71.52 24.03 24.58 11.39 30.94 41.21 22.53 40.89 61 E7b_E9a KnownJunction 0 18.15 12.23 7.13 19.11 11.71 15.50 9.63 5.34 18.43 7.76 9.05 25.21 6.17 28.55 13.35 49.65 58.81 11.23 8.85 8.88 30.95 14.39 22.62 62 E8_Aa NovelBoundary 0 23.78 5.99 2.37 1.43 0.00 13.86 1.77 2.26 0.00 1.07 0.00 0.00 12.99 0.00 0.00 0.00 4.77 3.90 3.76 2.56 0.00 0.00 0.00 63 ER8a ExonRegion 0 42.03 7.06 20.05 36.87 28.87 22.52 23.00 16.83 22.57 15.55 10.14 17.17 22.26 43.72 39.32 60.98 22.73 37.18 17.85 17.99 28.74 23.58 33.72 64 E8a_E9a KnownJunction 0 25.41 12.23 18.98 29.47 28.35 15.50 22.57 11.09 19.59 15.90 2.42 13.95 20.78 25.96 18.42 39.90 9.54 23.63 13.93 11.38 22.67 2.69 12.63 65 E8b_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 66 ER8b ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.73 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 67 ER9a ExonRegion 0 46.25 19.73 20.47 47.66 48.39 25.36 32.68 24.79 35.78 31.80 25.46 46.86 48.50 86.41 62.18 84.13 59.46 48.28 28.74 38.00 52.44 27.00 30.97 68 E9_Da KnownBoundary 1 110.17 59.99 23.03 44.35 33.45 31.18 48.49 26.78 40.60 30.14 21.95 126.49 60.22 96.47 84.31 97.84 39.18 40.33 28.42 33.17 47.14 28.23 26.80 69 ER9b ExonRegion 1 51.17 29.83 26.22 48.09 38.53 30.07 38.98 28.15 38.51 29.92 20.40 89.57 31.89 97.77 83.94 89.56 72.11 40.16 26.26 44.87 40.01 23.80 37.92 70 E9b_E11a KnownJunction 0 43.49 12.63 31.37 63.13 56.11 16.13 46.86 30.68 41.72 31.75 24.37 49.52 33.11 64.75 55.63 88.87 91.35 34.07 21.65 33.24 43.06 27.13 58.82 71 E9b_E12a KnownJunction 0 0.00 0.00 0.00 2.00 0.00 2.67 2.08 4.23 3.44 1.67 2.47 0.00 6.82 2.65 4.45 4.36 0.00 3.52 0.00 0.00 0.00 0.00 0.00 72 E10a_E11b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 73 ER10a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 74 ER11a ExonRegion 0 59.90 17.81 26.74 62.11 47.68 15.17 38.68 34.41 39.11 36.08 29.70 51.04 44.20 89.42 62.68 61.06 79.72 36.06 36.10 43.20 51.22 30.68 37.38 75 E11_Ab KnownBoundary 0 106.91 24.21 28.86 69.59 57.05 9.94 43.46 42.14 40.94 46.82 30.64 37.51 83.27 122.84 63.17 48.36 79.94 29.39 50.54 57.40 53.19 46.17 26.80 76 ER11b ExonRegion 0 62.25 24.31 21.83 51.82 55.81 40.32 58.59 29.42 26.37 32.67 41.39 78.17 92.78 82.76 61.43 77.66 69.53 39.39 25.28 39.80 52.05 33.54 34.54 77 E11a_E12a KnownJunction 1 48.23 13.75 34.00 59.30 70.97 61.73 76.05 26.12 31.74 47.41 16.53 93.63 87.01 80.76 79.49 71.01 52.36 46.97 31.81 40.14 28.60 38.15 50.62 78 ER12a ExonRegion 1 57.34 21.26 29.09 43.64 63.37 30.69 42.05 33.10 28.18 33.56 19.61 83.06 97.03 70.21 69.99 64.79 50.56 33.03 22.97 19.68 43.05 25.16 36.93 79 E12_Da KnownBoundary 0 22.97 38.22 27.59 61.96 50.85 13.06 17.22 35.53 24.86 31.05 13.37 49.97 26.78 24.31 11.13 8.37 21.97 4.68 13.74 9.78 13.34 11.63 14.77 80 ER12b ExonRegion 1 40.15 17.70 16.74 47.77 71.82 30.70 32.27 32.24 22.01 30.33 7.25 63.27 37.28 21.10 18.53 22.44 16.54 10.46 20.07 12.37 7.14 22.59 13.83 81 E12_Db KnownBoundary 1 6.89 21.71 12.77 23.04 48.90 32.14 14.66 19.02 15.77 25.65 6.79 94.23 20.29 17.19 33.87 8.46 16.83 6.59 15.72 11.12 11.18 11.27 4.27 82 ER12c ExonRegion 0 29.19 33.89 28.27 37.89 37.47 23.81 38.25 26.04 26.43 29.85 12.37 26.14 26.12 32.28 40.45 50.18 33.48 43.93 31.88 39.04 21.70 18.23 39.00 83 E12_Dc KnownBoundary 0 201.89 144.97 74.18 47.51 151.10 74.90 200.81 80.79 60.50 46.23 26.16 17.11 33.93 16.30 40.42 124.07 108.74 64.21 56.00 112.62 60.23 59.52 113.96 84 ER12d ExonRegion 0 57.67 29.23 28.50 44.31 54.22 25.62 36.53 26.56 20.61 21.74 12.57 26.55 26.67 29.84 34.68 38.25 25.89 19.92 20.12 23.26 17.15 22.04 26.31