Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 C1orf56 Gene 0 24.87 13.97 24.89 19.11 21.25 19.14 14.28 18.54 14.90 27.41 5.37 9.75 9.26 13.55 17.13 8.65 11.77 18.21 16.73 14.62 20.34 12.44 13.69 2 368926 Transcript 0 4.77 7.15 25.84 15.73 6.87 12.73 7.25 13.11 14.31 28.54 2.80 3.98 5.79 13.53 17.81 8.27 11.57 28.60 20.43 13.54 25.26 16.67 15.84 3 433087 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4 465135 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 473308 Transcript 0 11.32 12.07 5.92 8.88 3.08 12.22 8.64 3.45 8.74 5.90 1.47 5.08 4.34 2.99 8.21 6.64 5.70 3.75 9.15 8.16 5.08 2.40 4.50 6 ER1a ExonRegion 0 7.92 8.86 3.88 4.60 4.35 11.12 8.90 0.00 6.54 8.49 2.71 0.00 1.08 7.20 4.79 6.95 8.81 19.71 19.14 3.98 13.40 13.95 12.37 7 E1_Ab KnownBoundary 0 0.00 3.03 4.58 1.37 7.81 12.21 4.20 0.00 6.39 11.77 0.00 0.00 6.66 5.36 0.00 0.00 4.39 20.23 11.58 0.00 0.00 2.63 0.00 8 ER1b ExonRegion 0 10.09 9.95 32.09 20.81 9.14 16.19 6.37 19.85 16.42 34.88 4.40 5.91 6.78 19.33 18.05 11.04 11.17 33.16 23.98 19.26 32.78 17.43 22.56 9 E1_Da KnownBoundary 0 3.78 23.15 57.21 31.10 23.09 30.66 22.88 36.60 32.00 45.99 16.48 6.30 6.66 19.48 13.85 15.81 13.46 50.41 27.20 15.21 53.75 7.78 36.71 10 E1a_E1c KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 ER1c ExonRegion 0 6.54 14.55 52.18 33.05 18.52 22.91 10.49 23.23 24.56 54.16 5.20 8.04 14.68 27.10 18.05 9.80 23.15 49.89 34.50 25.48 47.71 28.98 20.59 12 E1_Ac KnownBoundary 0 14.45 6.45 41.99 31.80 24.11 21.07 10.60 21.19 25.03 73.63 2.21 0.00 5.84 12.24 28.06 0.00 21.79 53.23 4.14 20.26 63.82 19.90 11.52 13 ER1d ExonRegion 0 2.32 8.68 31.38 17.22 18.01 17.80 8.78 12.73 19.07 51.53 2.69 7.18 16.24 15.09 24.34 5.36 12.00 10.46 15.77 35.29 51.98 10.47 15.11 14 E1_Db KnownBoundary 0 0.00 8.29 36.96 22.84 16.38 16.35 7.77 21.32 21.30 27.99 2.63 6.30 0.00 12.60 31.15 8.12 3.93 17.91 15.81 27.04 43.31 7.90 23.82 15 E1b_E1d KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 ER1e ExonRegion 0 4.47 5.18 47.31 25.26 4.60 16.89 9.62 29.19 26.16 51.51 3.29 7.87 7.40 19.83 48.38 16.33 14.32 44.79 28.09 24.69 39.95 23.74 30.40 17 E1_Ad KnownBoundary 1 7.19 18.15 47.40 33.96 4.16 20.39 14.97 20.66 30.32 49.69 2.68 6.30 12.99 26.19 94.81 29.48 21.69 66.45 29.84 39.76 35.34 16.96 47.55 18 ER1f ExonRegion 0 11.31 12.49 54.02 29.32 4.74 31.59 14.68 41.29 45.70 63.37 8.84 1.61 15.41 26.96 62.17 7.47 21.03 71.64 44.05 38.12 43.44 16.67 29.62 19 E1_Ae KnownBoundary 0 20.30 17.30 50.62 21.74 21.39 56.90 26.14 44.73 53.36 47.84 12.27 5.25 13.47 27.61 43.02 0.00 16.55 61.14 56.19 36.62 53.44 12.80 27.15 20 ER1g ExonRegion 0 18.40 16.14 39.58 22.44 32.08 33.24 15.52 36.32 33.27 50.50 5.76 5.30 9.08 23.88 25.46 3.29 17.21 31.37 23.35 25.40 56.87 14.34 16.62 21 E1_Af KnownBoundary 0 13.04 28.42 67.32 44.78 17.91 16.07 16.47 32.33 34.06 65.36 12.27 6.30 6.33 15.72 46.60 8.72 0.00 17.16 13.27 23.84 49.79 29.39 11.27 22 ER1h ExonRegion 0 11.69 9.81 38.76 22.52 17.70 24.64 13.00 24.45 23.17 45.49 4.85 9.83 12.93 19.11 40.02 6.53 13.17 20.40 21.40 24.69 41.60 23.37 19.53 23 E1_Dc NovelBoundary 0 10.74 6.71 24.22 24.54 4.33 14.14 7.95 17.74 16.58 13.59 0.00 0.00 6.82 0.00 0.00 8.03 9.35 14.51 30.97 12.08 8.65 9.37 7.26 24 E1c_E2a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.85 0.00 0.00 0.00 0.00 0.00 0.00 0.00 25 E1c_E3a KnownJunction 0 0.00 3.35 27.65 8.32 8.66 2.56 6.01 15.61 13.83 31.00 2.32 12.30 19.48 6.71 25.34 4.36 0.00 1.53 8.19 5.43 10.26 17.08 8.45 26 I1 Intron 0 4.94 9.86 20.00 22.61 12.49 18.11 7.13 7.86 17.19 12.58 3.12 1.28 2.92 4.62 5.98 6.94 5.33 12.71 21.16 18.72 2.77 5.99 4.75 27 I1_AR1 ActiveIntronRegion 0 5.34 10.65 21.60 24.41 13.49 19.56 7.70 8.49 18.56 13.58 3.37 1.38 3.16 4.98 6.45 7.49 5.76 13.72 22.85 20.22 2.99 6.46 5.13 28 E2_Aa NovelBoundary 0 31.19 34.73 14.58 22.91 28.61 18.63 29.06 7.02 19.73 12.33 2.68 26.86 6.82 5.47 8.90 8.54 22.07 30.84 30.78 21.41 10.50 7.78 4.35 29 ER2a ExonRegion 0 22.65 24.14 11.84 17.76 6.16 24.43 17.28 6.90 17.48 11.80 2.94 10.16 8.67 5.97 16.43 9.43 11.39 7.50 18.30 16.32 10.16 4.79 9.01 30 E2_Da NovelBoundary 0 22.82 35.91 15.70 29.23 31.07 11.53 12.01 24.60 21.38 13.89 2.42 6.15 6.82 0.00 4.45 8.46 12.90 20.60 22.12 23.01 3.15 2.33 3.33 31 I2 Intron 0 25.23 11.42 10.46 17.92 19.32 7.15 15.17 11.80 5.70 8.03 1.33 8.06 6.29 3.47 4.45 5.11 3.78 6.32 9.86 9.02 2.02 3.82 4.38 32 I2_SR1 SilentIntronRegion 0 11.84 14.17 13.24 21.18 15.81 6.78 13.08 16.36 6.71 9.62 1.41 6.13 7.06 3.49 4.33 4.89 3.12 6.48 13.43 10.91 3.21 4.19 3.63 33 I2_AR1 ActiveIntronRegion 0 48.01 6.84 5.83 12.52 25.36 7.80 18.81 4.17 4.02 5.41 1.19 11.36 5.03 3.46 4.69 5.51 4.92 6.07 3.88 5.89 0.00 3.22 5.66 34 E3_Aa NovelBoundary 0 16.82 12.30 18.12 14.65 15.03 4.94 22.88 11.01 12.27 19.05 9.16 6.30 0.00 17.31 19.28 10.94 4.68 0.00 0.00 8.69 0.00 5.45 3.41 35 ER3a ExonRegion 0 18.06 7.96 31.42 19.11 23.00 20.37 21.10 14.60 16.50 39.48 4.85 14.55 27.04 13.17 26.42 7.65 10.89 5.82 12.81 14.35 18.80 19.06 18.68 36 E3_Da KnownBoundary 0 57.71 26.64 48.08 24.97 76.57 44.75 32.68 23.04 23.87 54.31 11.32 23.86 53.89 23.72 48.33 23.67 43.48 20.40 33.41 24.35 46.77 27.92 53.86 37 E3a_E4a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 38 ER3b ExonRegion 0 47.28 19.16 18.70 19.80 36.97 20.42 21.54 19.68 10.03 18.38 7.60 15.25 10.47 9.76 9.97 9.20 11.85 6.36 9.76 8.44 4.47 7.25 7.28 39 E3_Db NovelBoundary 1 153.06 37.16 12.63 21.11 205.26 51.62 62.80 13.31 8.65 14.08 12.11 19.36 20.29 123.85 47.35 58.62 26.83 1.91 3.76 5.69 2.66 17.21 24.93 40 E3_Dc NovelBoundary 0 285.31 74.13 15.97 17.68 248.81 105.28 103.34 20.82 9.69 11.82 51.49 61.52 6.33 86.64 129.55 81.00 42.45 6.96 24.38 2.43 31.75 32.70 43.45 41 ER3c ExonRegion 0 0.16 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 42 E4_Aa NovelBoundary 0 590.85 113.01 208.21 197.58 362.99 246.68 213.35 196.79 153.01 131.38 224.21 441.14 478.70 677.32 406.33 378.28 394.39 132.40 89.88 82.39 159.69 168.70 253.70 43 ER4a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00