Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 MRPL9 Gene 0 151.55 170.91 263.10 176.01 155.67 159.64 108.29 124.41 81.54 152.92 248.07 178.12 184.38 269.44 306.00 193.49 222.98 125.82 147.22 122.53 112.92 91.48 75.46 2 368830 Transcript 0 3.41 6.16 5.15 2.26 2.71 6.48 3.11 1.58 1.77 3.65 6.35 4.33 2.93 2.69 1.56 0.74 0.90 2.28 0.14 2.33 2.35 2.32 1.49 3 467306 Transcript 0 0.00 0.00 1.51 4.86 0.00 0.00 0.00 0.00 0.00 2.66 0.00 0.00 0.00 2.47 4.70 4.36 0.00 3.86 0.00 0.00 2.66 0.00 0.00 4 462783 Transcript 0 39.88 12.92 15.36 14.96 22.16 22.48 16.72 23.81 18.91 13.71 20.59 25.22 14.99 17.75 16.91 15.09 16.26 12.92 13.08 10.54 5.75 18.08 12.59 5 368829 Transcript 0 24.37 23.61 130.27 69.72 12.56 28.22 35.95 37.99 15.89 22.78 35.69 58.82 20.45 49.80 75.65 57.16 29.73 20.98 38.40 48.00 5.87 23.27 31.24 6 478926 Transcript 0 3.04 0.00 1.21 1.96 0.00 0.00 0.00 2.26 0.00 0.00 0.00 6.30 0.00 7.42 0.00 0.00 4.96 0.00 0.00 0.00 3.15 0.00 0.00 7 461182 Transcript 0 20.51 3.05 8.87 9.92 29.29 13.15 16.80 9.09 6.90 10.26 21.63 12.39 18.36 14.28 8.00 11.63 3.19 7.42 5.27 9.17 12.46 5.89 8.96 8 481777 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 9 486707 Transcript 0 0.00 9.47 5.50 0.00 0.00 8.29 0.00 0.00 3.15 0.00 2.26 0.00 0.00 9.12 0.00 8.72 4.77 1.62 0.00 0.00 0.00 0.00 0.00 10 492684 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 11 468006 Transcript 0 2.89 6.45 12.24 3.93 25.47 0.00 7.55 7.85 0.00 7.33 7.26 25.21 19.97 14.54 17.92 0.00 8.23 4.48 0.00 3.26 0.00 6.12 0.00 12 495867 Transcript 0 14.24 17.47 24.45 19.70 13.26 18.75 12.22 13.67 7.41 12.46 21.70 23.02 16.84 26.72 28.22 18.24 27.61 13.94 20.99 9.67 14.22 12.97 10.95 13 ER1a ExonRegion 0 2.06 2.15 0.80 0.77 0.74 5.63 0.92 1.00 0.75 0.42 0.14 0.00 0.00 0.09 0.21 0.00 0.14 0.40 0.28 0.40 2.49 1.51 0.04 14 E1_Ab KnownBoundary 0 7.48 6.18 1.83 0.00 0.00 10.33 0.00 0.00 1.79 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.57 0.00 0.00 0.00 0.00 0.00 15 E1_Ac KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.55 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 16 E1_Ad KnownBoundary 0 29.34 16.90 4.17 1.47 14.01 54.63 34.58 3.49 1.45 4.03 13.21 0.00 0.00 4.65 4.45 0.00 19.35 7.67 16.38 3.26 13.71 0.00 7.26 17 ER1b ExonRegion 0 16.93 14.24 2.45 1.36 9.17 41.13 23.26 5.19 1.24 2.29 8.56 0.00 0.00 5.57 9.95 0.00 11.32 3.70 12.74 2.13 9.13 0.30 2.94 18 ER1c ExonRegion 1 44.87 27.66 11.27 5.18 23.55 90.22 49.78 7.95 5.43 11.24 29.77 0.00 0.00 14.29 66.15 17.24 38.95 7.02 22.30 17.02 16.31 5.83 12.92 19 ER1d ExonRegion 1 91.91 65.79 58.40 18.51 68.54 158.33 81.90 17.54 19.20 43.51 79.89 3.73 1.70 86.89 121.27 72.60 79.71 33.10 48.32 44.82 35.99 29.26 32.96 20 E1_Ae KnownBoundary 0 3.78 13.55 38.70 10.62 8.15 32.59 12.14 26.33 21.30 17.73 42.43 24.76 6.82 36.49 35.97 4.36 16.36 41.37 18.26 9.20 11.92 11.39 14.08 21 ER1e ExonRegion 1 13.42 24.73 64.64 8.96 14.62 23.32 10.99 22.41 37.41 58.29 114.80 15.93 30.74 63.69 65.17 25.79 77.63 34.71 17.52 27.24 83.66 6.62 19.77 22 E1a_E2a KnownJunction 1 36.97 50.06 124.74 30.43 18.00 31.91 10.69 55.20 68.03 116.72 324.82 11.70 26.13 140.50 123.25 50.76 273.40 29.93 27.29 103.87 210.54 2.27 23.05 23 E1a_E3a NovelJunction 0 0.00 0.00 0.00 1.90 0.00 0.00 0.00 0.00 0.00 0.00 7.74 0.00 0.00 0.00 4.45 0.00 12.25 0.00 0.00 0.00 0.00 0.00 0.00 24 ER1f ExonRegion 1 24.79 40.96 116.94 24.14 14.91 25.67 10.02 38.52 55.58 98.47 279.17 12.99 34.17 125.99 113.98 47.55 208.43 30.09 21.84 89.36 187.94 3.57 23.91 25 ER2a ExonRegion 1 42.65 62.71 150.05 53.82 18.03 40.87 21.93 49.02 55.66 109.86 221.99 16.61 33.89 181.76 233.15 69.99 125.56 53.15 49.29 103.67 112.17 46.67 26.54 26 E2_Ab KnownBoundary 1 40.97 121.95 207.24 100.52 27.33 55.65 43.59 94.47 79.72 126.01 186.68 43.36 104.70 192.77 238.58 161.58 110.33 177.38 114.73 103.93 76.17 48.62 76.66 27 ER2b ExonRegion 0 109.34 163.69 236.72 98.87 39.86 150.16 90.82 98.39 79.13 149.38 204.01 79.28 68.65 276.59 221.78 129.04 165.13 111.30 114.14 125.61 112.50 77.39 67.28 28 E2_Da KnownBoundary 0 7.11 11.45 13.84 12.29 0.00 38.95 3.62 5.71 13.51 14.10 5.21 0.00 0.00 24.66 28.56 6.92 25.53 17.12 14.21 5.56 2.72 5.57 11.95 29 E2a_E3a KnownJunction 0 88.24 214.83 347.03 132.75 125.72 289.61 167.20 117.76 85.18 192.14 201.79 91.83 139.60 278.00 154.27 107.15 217.48 89.50 65.98 169.83 100.45 58.54 77.94 30 ER2c ExonRegion 0 6.23 8.08 17.23 17.60 6.27 41.44 8.17 9.98 16.55 21.53 9.33 11.75 5.90 26.73 19.89 17.83 14.71 10.77 12.10 8.21 5.29 10.06 14.01 31 E2_Db KnownBoundary 0 3.78 0.00 1.54 3.90 8.57 10.16 4.11 4.81 6.74 3.28 2.16 12.30 6.82 6.95 0.00 4.02 3.37 2.32 7.91 6.52 3.15 9.37 3.41 32 E2b_E3a KnownJunction 0 0.00 9.47 5.50 0.00 0.00 8.29 0.00 0.00 3.15 0.00 2.26 0.00 0.00 9.12 0.00 8.72 4.77 1.62 0.00 0.00 0.00 0.00 0.00 33 E2_Dc KnownBoundary 0 7.33 3.35 9.91 7.72 8.23 14.20 11.04 8.91 16.06 6.66 9.63 0.00 13.31 4.94 22.75 4.36 4.49 7.17 4.14 8.63 2.90 3.06 15.96 34 E2c_E3a KnownJunction 0 0.00 0.00 1.51 4.86 0.00 0.00 0.00 0.00 0.00 2.66 0.00 0.00 0.00 2.47 4.70 4.36 0.00 3.86 0.00 0.00 2.66 0.00 0.00 35 ER2d ExonRegion 0 10.16 5.29 13.97 18.81 16.05 45.11 10.86 11.75 18.53 23.63 13.92 21.65 14.07 19.81 28.43 18.43 12.54 11.09 6.37 12.77 11.90 12.08 23.49 36 ER2e ExonRegion 0 39.88 12.92 15.36 14.96 22.16 22.48 16.72 23.81 18.91 13.71 20.59 25.22 14.99 17.75 16.91 15.09 16.26 12.92 13.08 10.54 5.75 18.08 12.59 37 E2_Dd NovelBoundary 0 47.93 44.86 39.41 18.61 69.52 41.91 24.69 53.93 42.45 31.35 24.95 19.81 32.95 31.31 21.76 15.89 4.77 12.64 42.26 23.71 9.20 27.25 15.79 38 I2 Intron 0 30.71 8.05 6.42 3.57 14.12 24.20 19.21 15.85 3.24 8.26 10.20 25.30 14.35 15.96 13.13 6.53 5.81 3.63 7.00 4.68 6.78 10.08 6.46 39 I2_AR1 ActiveIntronRegion 0 31.25 8.19 6.54 3.62 14.34 24.60 19.55 16.13 3.29 8.40 10.36 25.67 14.56 16.21 13.36 6.65 5.91 3.70 7.07 4.76 6.90 10.25 6.57 40 E3_Aa NovelBoundary 0 59.86 25.46 29.15 21.44 93.89 17.60 21.68 39.35 38.28 26.24 29.85 55.52 13.96 30.26 32.51 36.74 24.12 8.04 7.72 19.24 10.87 20.64 20.49 41 ER3a ExonRegion 0 161.09 311.06 463.68 277.16 217.72 384.44 244.22 200.11 131.08 280.29 409.02 227.97 311.79 416.24 390.46 236.58 316.15 138.77 158.15 222.94 178.43 118.54 85.37 42 E3_Da KnownBoundary 0 31.04 14.41 25.49 20.41 73.26 23.51 43.59 23.78 21.15 25.04 26.74 0.00 46.75 19.48 13.60 19.91 14.12 15.92 8.38 15.15 11.61 5.51 16.73 43 E3a_E4a KnownJunction 0 490.90 471.30 708.90 434.94 444.65 270.47 309.89 293.10 146.38 324.09 579.25 337.16 367.18 725.65 550.59 382.04 511.36 270.15 376.10 306.99 256.81 243.10 136.07 44 ER3b ExonRegion 0 20.51 3.05 8.87 9.92 29.29 13.15 16.80 9.09 6.90 10.26 21.63 12.39 18.36 14.28 8.00 11.63 3.19 7.42 5.27 9.17 12.46 5.89 8.96 45 I3 Intron 0 43.31 17.93 17.82 10.87 21.90 10.39 13.34 19.46 11.01 13.45 17.05 27.82 14.68 15.64 8.92 14.04 11.43 4.05 8.02 8.04 5.54 16.40 11.09 46 I3_AR1 ActiveIntronRegion 0 43.83 18.15 18.04 11.01 22.16 10.52 13.50 19.70 11.15 13.62 17.25 28.14 14.86 15.81 9.03 14.19 11.53 4.10 8.12 8.14 5.59 16.60 11.23 47 E4_Aa NovelBoundary 0 92.24 14.73 19.87 39.56 24.11 28.11 37.14 36.10 15.19 15.74 29.69 30.46 12.66 16.89 8.90 16.06 12.44 13.10 17.41 21.80 5.68 3.06 3.67 48 ER4a ExonRegion 0 253.00 282.34 625.68 396.41 313.12 244.36 200.10 257.82 157.52 298.73 579.96 403.85 345.21 649.01 540.58 374.35 581.19 289.45 332.91 269.87 240.92 209.90 154.28 49 E4_Da NovelBoundary 0 60.90 103.80 261.46 201.54 121.82 103.69 90.14 107.78 87.09 139.25 218.16 166.40 119.80 176.88 102.11 161.15 263.49 122.04 130.45 102.33 97.67 73.85 65.99 50 E4a_E5a KnownJunction 0 3.04 0.00 1.21 1.96 0.00 0.00 0.00 2.26 0.00 0.00 0.00 6.30 0.00 7.42 0.00 0.00 4.96 0.00 0.00 0.00 3.15 0.00 0.00 51 E4a_E7b NovelJunction 0 0.00 3.35 10.50 12.52 3.82 0.00 1.68 7.23 2.86 4.43 5.05 0.00 0.00 7.42 15.82 11.79 8.32 0.00 3.58 0.00 2.72 2.88 12.38 52 E4b_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.58 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 53 E4b_E5b KnownJunction 0 0.00 0.00 0.00 1.96 0.00 0.00 0.00 0.00 1.50 0.00 0.00 0.00 0.00 0.00 4.45 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 54 E4b_E6a KnownJunction 0 181.51 206.28 369.38 289.97 175.81 148.04 77.20 199.54 130.55 215.86 445.80 382.62 392.18 477.19 485.82 354.86 558.11 220.95 191.06 215.78 187.12 152.84 111.74 55 E4b_E7b KnownJunction 0 24.37 23.61 130.27 69.72 12.56 28.22 35.95 37.99 15.89 22.78 35.69 58.82 20.45 49.80 75.65 57.16 29.73 20.98 38.40 48.00 5.87 23.27 31.24 56 ER4b ExonRegion 0 150.80 208.44 544.37 371.73 209.04 171.46 120.15 234.64 147.13 272.96 496.27 436.73 379.89 535.55 508.81 396.78 589.62 258.22 245.27 243.62 206.32 164.60 145.00 57 I4 Intron 0 23.23 5.25 0.00 2.62 43.18 33.15 18.80 0.00 3.56 2.21 13.73 30.58 17.63 24.67 10.03 17.27 4.26 2.97 14.39 8.24 7.11 10.76 11.37 58 I4_AR1 ActiveIntronRegion 0 23.83 5.39 0.00 2.65 44.31 33.98 19.29 0.00 3.66 2.25 14.03 31.37 18.09 25.29 10.29 17.72 4.37 3.02 14.77 8.46 7.27 11.01 11.63 59 E5_Aa NovelBoundary 0 68.23 38.09 36.84 33.76 14.94 33.16 12.50 22.55 9.49 9.43 18.74 18.91 0.00 28.90 22.62 16.15 16.36 14.88 13.46 9.78 5.50 15.68 8.71 60 ER5a ExonRegion 0 12.96 6.86 2.99 2.39 9.53 4.47 0.99 2.70 1.39 0.57 9.18 21.11 5.28 14.72 4.53 20.43 5.98 0.58 0.00 2.79 7.16 3.00 6.24 61 ER5b ExonRegion 0 19.00 7.88 1.66 2.70 8.64 7.79 2.68 3.46 5.71 0.55 11.40 35.27 11.73 12.38 16.86 15.42 9.21 0.19 0.00 1.73 8.59 4.73 7.89 62 E5_Da NovelBoundary 0 27.49 23.88 24.81 37.72 11.54 9.88 10.60 31.79 25.38 41.80 28.32 0.00 21.26 25.96 38.32 40.50 17.58 18.03 18.73 17.07 19.34 14.02 3.33 63 E5a_E6a KnownJunction 0 10.59 0.00 0.00 1.43 0.00 6.98 0.00 2.05 11.37 0.00 10.06 7.20 0.00 2.41 4.45 0.00 0.00 0.00 0.00 0.00 5.99 6.49 3.24 64 I5 Intron 0 31.43 18.38 8.25 19.23 23.61 21.31 13.11 10.53 9.51 10.67 21.63 15.40 4.87 25.74 17.52 19.83 6.39 10.88 18.51 7.33 9.48 12.55 10.74 65 I5_AR1 ActiveIntronRegion 0 31.69 18.54 8.32 19.39 23.81 21.48 13.21 10.61 9.59 10.76 21.79 15.51 4.91 25.93 17.67 20.00 6.45 10.97 18.65 7.39 9.57 12.66 10.83 66 E6_Aa NovelBoundary 0 86.09 33.28 25.96 54.07 44.91 54.91 28.22 24.73 28.30 20.93 54.70 6.30 0.00 55.80 4.57 62.12 29.73 16.58 3.95 6.26 14.95 7.35 20.32 67 ER6a ExonRegion 0 190.92 232.07 452.41 317.67 192.26 211.05 122.43 199.03 153.08 274.55 427.63 422.38 377.55 550.24 518.30 434.63 495.13 267.43 212.39 213.14 211.94 182.19 128.35 68 E6_Ab KnownBoundary 0 187.66 212.00 279.74 213.26 194.91 249.12 136.64 152.30 93.49 176.51 287.34 320.65 218.33 364.00 346.25 344.61 316.60 136.71 185.23 156.92 126.21 128.41 100.56 69 E6_Da KnownBoundary 0 310.35 269.62 267.58 182.83 219.35 181.88 167.60 117.43 84.23 168.29 354.41 248.63 274.17 325.45 344.40 342.65 276.67 182.98 227.77 184.72 170.88 203.79 142.47 70 ER6b ExonRegion 0 352.75 331.47 431.33 323.57 315.07 292.49 210.40 189.84 149.76 277.26 495.31 443.77 442.43 572.50 589.92 558.26 472.58 291.33 332.34 242.38 258.57 255.75 183.78 71 ER6c ExonRegion 0 401.41 334.14 463.31 307.33 333.30 266.65 216.84 186.67 151.46 283.79 436.90 453.92 453.47 565.65 639.36 484.64 448.51 315.62 337.45 214.49 269.82 229.25 188.86 72 E6_Db NovelBoundary 1 354.36 288.37 254.60 190.69 259.17 185.97 171.22 119.53 97.34 138.12 220.11 394.33 318.49 419.86 549.36 307.01 336.89 188.03 216.01 123.42 204.61 123.45 123.61 73 E6c_E7b KnownJunction 0 239.15 385.13 505.07 359.56 214.43 233.45 199.97 299.68 151.30 297.93 445.06 374.07 326.76 511.69 476.67 293.09 495.37 324.83 329.89 192.20 286.40 182.05 159.20 74 E6c_E8a NovelJunction 0 3.41 3.09 0.00 0.00 0.00 0.00 0.00 0.00 1.33 0.00 11.21 12.60 19.80 0.00 0.00 0.00 4.68 0.00 4.05 0.00 0.00 0.00 0.00 75 ER6d ExonRegion 0 256.45 302.75 399.16 277.74 244.16 215.01 172.72 201.22 128.30 249.98 358.87 394.88 329.47 509.16 511.47 322.48 459.51 268.39 288.54 167.29 263.99 174.58 158.82 76 I6_AR1 ActiveIntronRegion 0 27.87 15.93 13.89 24.99 27.20 16.81 8.39 35.43 15.03 17.97 15.79 8.66 14.07 13.26 5.80 24.27 15.40 10.47 7.43 6.38 4.41 6.95 2.94 77 I6_SR2 SilentIntronRegion 0 33.78 16.14 18.35 24.83 19.92 16.62 14.44 24.52 16.34 16.24 10.24 5.64 5.03 12.41 12.36 22.97 11.57 7.75 15.21 7.61 5.03 8.17 3.99 78 ER7a ExonRegion 0 14.24 17.47 24.45 19.70 13.26 18.75 12.22 13.67 7.41 12.46 21.70 23.02 16.84 26.72 28.22 18.24 27.61 13.94 20.99 9.67 14.22 12.97 10.95 79 ER7b ExonRegion 0 281.50 367.26 515.73 355.11 266.50 314.02 225.60 265.97 141.69 277.46 466.37 383.24 382.71 574.29 538.36 394.10 538.71 279.31 348.10 234.98 275.02 195.68 182.19 80 ER7c ExonRegion 0 368.86 349.32 491.01 370.73 300.93 308.90 205.05 261.26 148.51 285.05 450.40 378.31 353.94 558.47 627.82 411.33 471.35 306.12 328.64 232.17 241.57 161.08 167.39 81 E7b_E8a KnownJunction 0 633.89 512.08 606.81 462.65 345.93 312.49 240.47 285.05 194.12 316.49 450.22 475.35 344.78 559.19 667.78 420.40 413.28 358.36 372.81 230.93 259.40 191.29 154.51 82 E7b_E8b KnownJunction 0 2.89 6.45 12.24 3.93 25.47 0.00 7.55 7.85 0.00 7.33 7.26 25.21 19.97 14.54 17.92 0.00 8.23 4.48 0.00 3.26 0.00 6.12 0.00 83 ER8a ExonRegion 0 391.60 496.03 486.91 346.05 369.48 351.09 242.70 255.87 155.85 294.48 504.65 414.34 436.61 556.97 623.06 439.11 444.42 331.87 308.77 223.39 254.05 191.92 159.75 84 E8_Ab KnownBoundary 0 151.88 419.40 478.19 393.96 300.68 347.47 203.59 272.57 125.58 279.02 375.46 389.23 520.26 504.09 711.05 346.66 316.41 274.96 233.32 237.26 174.64 92.16 116.61 85 ER8b ExonRegion 0 145.51 241.61 610.00 431.70 358.19 275.01 200.85 293.01 174.71 341.90 586.77 377.55 402.61 562.86 764.27 468.14 463.16 293.74 370.04 273.76 203.87 183.63 173.88 86 E8_Da KnownBoundary 0 75.72 81.17 317.20 217.72 116.55 89.04 67.92 130.66 95.46 191.47 333.40 248.03 134.41 255.46 418.07 257.03 190.93 141.07 221.56 169.00 88.90 109.98 83.91 87 E8_Db KnownBoundary 0 192.40 178.46 314.65 270.53 234.21 199.20 121.58 148.48 106.45 172.40 296.29 130.99 140.58 296.66 439.21 209.94 323.70 95.55 226.08 157.49 144.50 97.12 72.47 88 ER8c ExonRegion 0 176.38 194.32 540.39 416.13 282.44 224.95 135.93 256.00 172.92 329.93 550.02 408.41 299.64 561.95 795.91 387.04 454.79 212.49 358.88 269.27 194.91 168.07 125.30 89 ER8d ExonRegion 0 289.24 243.49 387.67 279.84 249.83 182.86 128.14 169.78 102.89 195.56 278.71 250.35 276.52 323.00 437.66 237.69 285.06 105.57 206.01 156.30 103.87 125.40 85.64 90 ER8e ExonRegion 0 18.14 27.89 21.18 13.04 28.67 25.15 26.67 8.89 8.29 14.25 43.63 21.03 24.12 41.53 41.86 12.31 24.05 5.54 4.10 10.64 4.09 8.93 5.03 91 ER8f ExonRegion 0 4.76 10.17 9.50 3.75 4.68 7.34 5.30 2.16 2.78 6.88 12.56 8.66 5.86 5.28 2.90 1.49 1.65 4.16 0.00 4.26 2.20 3.13 2.94