Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 FAM63A Gene 0 28.03 48.05 75.63 67.75 43.90 71.58 29.40 50.95 86.01 46.09 2.90 15.69 20.87 25.75 30.18 32.57 21.76 46.89 27.46 50.24 34.48 22.62 26.16 2 493834 Transcript 0 7.32 11.65 19.71 19.20 16.75 20.23 10.39 15.47 22.74 11.44 1.83 6.08 5.94 6.19 11.00 8.71 6.26 12.58 7.23 13.91 6.37 5.06 7.97 3 470877 Transcript 0 0.00 3.09 14.65 10.22 0.00 1.14 2.83 4.13 11.37 8.66 0.00 0.00 0.00 1.06 0.00 2.05 0.00 10.11 0.00 7.32 5.44 6.09 2.18 4 312210 Transcript 0 1.67 1.16 0.26 2.90 2.10 2.90 2.25 0.43 3.14 1.56 0.07 0.31 1.17 1.93 1.14 0.00 2.83 5.52 3.14 1.41 4.73 2.38 5.97 5 361936 Transcript 1 40.20 80.22 86.22 115.38 51.80 56.44 78.79 74.61 55.36 83.19 8.17 218.80 648.29 24.26 8.37 42.41 23.11 68.51 36.97 60.45 36.69 14.33 32.78 6 361738 Transcript 0 2.89 2.75 0.00 0.00 0.00 0.77 1.84 0.00 0.00 0.00 0.00 3.23 0.00 1.71 2.74 1.35 0.00 0.00 0.00 0.89 0.00 0.00 1.23 7 368945 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 497067 Transcript 0 8.41 14.48 48.35 34.27 8.88 44.51 11.10 27.72 41.91 19.98 0.38 1.38 3.10 6.26 4.20 7.97 5.37 32.18 8.64 20.51 5.04 1.71 6.58 9 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10 ER2a ExonRegion 0 5.89 6.71 14.99 14.17 8.30 6.05 7.65 13.29 17.47 17.82 2.27 7.28 7.71 6.29 10.97 7.96 6.09 17.64 7.79 11.68 6.78 2.30 7.43 11 E2_Ab KnownBoundary 0 26.30 6.12 0.00 0.00 3.82 10.62 0.00 0.00 5.12 0.00 2.42 0.00 0.00 18.89 8.90 0.00 0.00 2.16 9.60 0.00 18.41 9.00 8.19 12 E2_Ac KnownBoundary 0 74.31 11.31 8.49 8.46 18.59 29.93 21.15 12.40 34.69 11.12 4.84 0.00 0.00 26.31 35.35 43.15 12.34 7.05 30.59 30.36 28.97 10.84 45.67 13 ER2b ExonRegion 0 71.05 15.54 11.12 8.47 15.48 29.08 17.12 14.57 35.02 14.01 3.87 0.00 0.00 36.77 34.61 36.09 16.03 4.62 36.86 25.99 39.04 12.80 39.43 14 ER2c ExonRegion 0 153.91 51.69 30.06 23.85 33.05 69.96 39.23 38.57 60.13 37.56 5.25 5.20 0.00 40.79 37.91 65.63 33.17 20.79 59.09 56.67 52.49 39.69 46.40 15 E2_Ad KnownBoundary 0 183.44 132.81 40.30 29.27 39.22 110.67 73.44 41.24 59.84 47.33 0.00 5.85 5.84 13.60 8.90 24.35 14.31 47.67 18.45 56.69 20.70 18.92 18.18 16 ER2d ExonRegion 0 55.30 49.33 65.28 43.04 24.08 78.46 34.94 71.24 112.85 76.26 3.25 22.17 25.76 44.57 40.19 46.08 39.07 73.62 43.95 84.30 71.88 47.65 44.67 17 E2_Da NovelBoundary 0 34.45 0.00 21.55 28.33 19.78 13.40 19.39 18.69 25.03 13.97 2.11 11.70 6.82 14.19 13.35 32.47 12.62 16.58 26.54 20.96 31.07 5.39 32.27 18 E2a_E4a KnownJunction 0 29.34 51.44 52.22 45.91 7.39 81.77 14.88 90.20 150.87 106.24 2.11 0.00 6.33 7.59 4.45 15.47 16.83 63.96 37.46 97.09 3.15 5.02 8.54 19 E2a_E4b NovelJunction 0 5.93 2.83 3.02 6.86 0.00 0.00 6.85 11.30 4.48 8.35 2.11 0.00 6.49 32.26 8.90 25.55 17.39 2.57 0.00 2.81 27.00 8.63 13.06 20 E2a_E4d KnownJunction 0 3.33 0.00 0.00 1.33 0.00 5.79 1.94 0.00 3.91 0.00 0.00 0.00 0.00 2.24 0.00 0.00 4.49 8.66 4.24 2.81 9.45 0.00 8.37 21 E2a_E4e KnownJunction 0 0.00 0.00 0.00 1.47 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 22 I2 Intron 0 13.15 5.32 11.94 9.30 8.75 7.79 9.52 6.74 9.03 8.38 0.63 9.66 15.42 5.81 7.76 9.72 8.63 9.61 8.33 17.39 12.25 8.17 12.48 23 I2_AR1 ActiveIntronRegion 0 13.30 5.39 12.09 9.41 8.86 7.89 9.65 6.82 9.14 8.48 0.64 9.78 15.62 5.88 7.86 9.84 8.75 9.72 8.44 17.62 12.41 8.28 12.64 24 E3_Aa NovelBoundary 0 16.74 11.84 22.21 25.87 19.78 18.00 8.17 22.63 21.87 26.62 0.00 11.70 19.15 7.18 16.81 21.28 4.68 19.23 27.95 18.34 18.84 9.00 11.69 25 ER3a ExonRegion 0 5.77 5.51 0.00 0.00 0.00 1.53 3.68 0.00 0.00 0.00 0.00 6.45 0.00 3.43 5.49 2.70 0.00 0.00 0.00 1.78 0.00 0.00 2.46 26 E3_Da NovelBoundary 0 39.49 23.68 23.74 20.21 8.23 15.90 3.89 8.21 12.36 14.13 1.95 29.41 19.48 9.95 8.78 18.88 8.42 4.64 17.60 27.74 19.65 17.94 11.95 27 E3a_E4b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 28 I3 Intron 0 32.20 10.26 15.76 18.62 16.38 12.66 14.75 13.13 15.34 12.77 1.62 15.84 21.14 9.49 9.59 14.51 8.90 11.40 13.15 20.83 11.94 12.08 11.64 29 I3_AR1 ActiveIntronRegion 0 45.46 12.86 17.28 29.81 16.94 15.82 18.60 20.69 25.35 19.82 5.20 24.28 31.87 13.26 13.66 14.02 11.82 12.32 14.78 39.48 15.12 14.18 12.65 30 I3_SR1 SilentIntronRegion 0 19.73 8.72 18.75 17.95 17.24 11.73 13.76 17.53 16.31 11.40 1.63 16.87 26.45 10.14 9.40 18.21 9.56 13.58 14.83 21.00 11.14 13.33 13.04 31 I3_SR2 SilentIntronRegion 0 23.99 4.41 8.92 10.65 14.83 11.61 8.75 4.05 6.70 5.82 0.23 8.49 11.36 7.46 4.41 8.09 3.88 2.38 8.98 10.33 6.50 5.73 6.30 32 I3_AR2 ActiveIntronRegion 0 48.29 15.72 17.04 20.89 16.47 13.33 19.12 11.66 16.66 16.92 1.09 16.69 17.68 8.67 12.20 15.44 10.89 15.68 13.81 20.66 15.96 14.79 13.86 33 E4_Aa NovelBoundary 0 73.42 8.68 70.52 64.33 18.59 48.89 37.14 43.05 35.42 35.59 0.00 12.60 34.90 29.55 18.54 16.83 27.02 43.07 57.13 32.47 37.44 39.07 37.47 34 ER4a ExonRegion 0 40.83 59.91 82.51 94.54 49.53 108.47 41.44 88.72 162.08 100.02 1.12 20.84 35.77 25.71 21.27 39.82 19.78 87.99 48.70 86.55 46.95 24.96 28.51 35 E4_Ab KnownBoundary 0 54.23 41.44 80.42 128.75 31.66 133.45 65.85 93.57 154.74 107.56 0.00 18.01 26.95 19.07 17.80 37.51 13.37 101.73 46.40 85.01 24.46 31.54 29.02 36 ER4b ExonRegion 0 63.99 60.25 90.39 88.25 51.92 101.89 36.09 74.56 145.94 90.93 2.22 26.90 31.62 48.72 26.67 38.60 42.54 77.19 38.80 83.77 53.68 38.51 25.57 37 E4_Ac KnownBoundary 0 64.83 113.53 97.34 88.80 51.36 80.01 58.91 70.24 150.90 87.03 0.00 32.86 35.55 45.50 16.56 42.55 35.44 73.12 47.81 73.63 25.76 33.25 51.56 38 ER4c ExonRegion 0 29.47 59.35 99.97 80.75 51.23 94.50 39.91 70.17 151.56 100.00 0.69 14.48 34.68 56.41 39.63 59.59 48.56 97.23 37.66 84.22 74.40 44.86 45.60 39 E4_Ad KnownBoundary 1 37.86 84.85 88.26 87.07 34.63 91.03 42.75 68.76 208.16 120.69 0.00 19.21 26.95 64.92 56.86 88.18 18.89 127.63 81.79 90.06 69.07 48.68 70.42 40 ER4d ExonRegion 0 61.01 64.32 115.45 105.55 67.61 117.16 49.25 87.46 176.30 119.49 2.34 33.22 59.93 67.54 54.55 91.73 43.84 102.40 63.15 89.76 93.10 55.42 66.91 41 E4a_E5a KnownJunction 0 78.90 98.34 86.78 105.58 91.26 130.83 48.71 75.74 127.78 88.89 2.26 24.61 27.11 63.22 46.85 81.26 25.25 77.93 35.95 83.99 61.59 57.50 59.75 42 ER4e ExonRegion 1 53.34 69.96 89.94 106.03 75.46 115.53 38.13 69.14 143.52 107.81 3.87 47.62 52.53 62.04 35.98 85.60 23.11 76.87 39.50 70.21 74.04 52.50 65.78 43 ER5a ExonRegion 0 33.79 79.63 91.88 104.90 65.88 99.69 51.31 91.85 161.25 103.42 5.37 30.90 33.48 62.50 47.47 79.27 31.02 122.02 104.79 86.76 93.01 59.74 62.58 44 E5a_E6a KnownJunction 0 56.23 104.98 111.71 95.36 143.72 112.55 86.03 102.23 192.94 109.44 0.00 31.66 25.97 48.15 79.61 114.76 40.21 152.96 124.14 122.02 135.11 88.60 84.08 45 ER6a ExonRegion 1 41.87 71.77 112.30 95.38 94.56 108.65 37.46 76.03 163.00 87.04 3.30 30.17 45.75 57.84 48.56 92.82 29.25 116.66 56.50 95.45 104.49 48.18 50.19 46 E6a_E7a KnownJunction 1 42.82 71.76 116.35 112.77 59.68 98.58 27.07 60.46 143.72 87.46 4.21 49.67 52.76 66.51 50.81 84.34 12.25 85.68 63.06 98.69 87.41 46.41 25.87 47 E6a_E8a KnownJunction 0 0.00 6.18 29.30 18.98 0.00 2.27 5.65 8.26 22.74 17.33 0.00 0.00 0.00 2.12 0.00 4.10 0.00 20.23 0.00 14.64 10.87 12.19 4.35 48 ER7a ExonRegion 0 26.37 70.61 100.10 99.31 66.99 123.29 45.01 76.81 142.19 85.38 4.16 31.94 40.50 52.28 54.30 70.00 35.38 84.10 60.68 77.29 82.02 51.67 43.62 49 E7a_E8a KnownJunction 0 23.86 52.42 124.51 104.42 14.52 66.95 27.95 72.95 137.15 99.09 9.84 18.61 19.97 47.97 40.79 81.77 33.38 70.93 49.60 99.58 65.55 33.86 32.61 50 E8_Aa NovelBoundary 0 16.67 3.35 3.67 8.72 3.23 7.21 6.18 7.76 11.72 9.89 0.00 0.00 6.82 2.47 4.45 4.36 0.00 5.68 4.33 11.76 0.00 0.00 3.50 51 ER8a ExonRegion 0 44.82 74.55 162.01 146.27 75.05 90.00 30.68 95.00 165.79 90.22 7.21 25.30 38.57 59.81 62.39 70.96 56.98 115.85 46.54 85.44 83.51 52.94 35.24 52 E8a_E9a KnownJunction 0 55.42 165.50 174.59 142.74 109.25 119.76 45.53 122.11 172.34 84.62 9.90 12.00 47.07 45.03 42.40 91.60 86.11 149.77 45.08 111.09 78.15 70.48 83.14 53 ER9a ExonRegion 0 41.60 85.63 157.27 126.38 73.60 133.16 39.71 100.18 163.37 90.08 4.50 39.99 37.20 59.87 61.67 82.48 59.94 95.24 46.87 109.04 68.66 48.64 49.75 54 E9_Da KnownBoundary 0 105.94 148.46 216.61 186.49 124.53 252.30 74.46 95.46 194.30 107.42 5.16 50.12 20.29 73.28 81.09 113.56 98.64 96.05 79.91 99.84 90.63 45.13 115.50 55 ER9b ExonRegion 0 42.68 90.88 149.99 133.85 77.09 163.08 42.11 83.01 146.01 78.78 2.21 23.50 14.41 58.74 55.47 60.57 47.23 62.43 58.02 58.51 96.07 43.06 48.31 56 E9_Db NovelBoundary 0 6.59 10.79 4.88 22.08 12.05 11.02 14.35 11.46 17.10 7.87 0.00 0.00 0.00 2.47 4.57 11.71 3.46 10.86 0.00 15.21 0.00 0.00 0.00 57 E9b_E10a KnownJunction 0 30.89 75.32 138.52 127.42 78.86 130.78 36.88 94.22 131.54 74.19 0.00 29.26 6.82 48.62 38.20 55.97 17.86 62.47 67.58 42.44 108.79 49.72 22.54 58 I9_SR1 SilentIntronRegion 0 4.26 6.55 13.23 7.36 6.10 4.68 5.68 11.06 17.79 7.34 0.52 0.48 0.52 2.45 3.64 5.98 2.66 9.24 5.56 5.71 3.55 1.40 3.94 59 ER10a ExonRegion 0 43.25 54.20 149.74 108.26 39.75 91.04 27.62 86.99 137.81 72.33 0.30 24.89 29.85 51.47 52.50 49.38 43.90 84.09 38.56 71.32 72.15 40.61 30.72 60 E10_Ab KnownBoundary 0 54.75 73.34 131.40 121.30 78.18 95.34 20.93 84.08 156.13 77.47 2.42 54.47 58.11 25.02 51.55 85.79 31.14 77.68 48.19 77.08 90.57 14.14 48.91 61 ER10b ExonRegion 0 25.86 40.76 102.29 72.70 36.21 93.50 26.06 61.07 109.13 58.62 0.77 17.91 19.40 37.61 39.00 27.86 25.96 50.83 35.65 46.06 64.43 21.59 31.87 62 E10_Da NovelBoundary 0 0.00 0.00 28.65 10.29 8.15 10.33 3.89 10.31 35.04 3.81 0.00 0.00 0.00 7.24 0.00 0.00 4.39 12.93 13.84 11.57 5.81 0.00 0.00 63 E10a_E11a KnownJunction 0 20.82 54.40 120.28 75.35 31.49 85.92 21.73 43.70 98.78 55.95 2.68 14.70 0.00 41.14 28.43 20.34 26.93 45.76 43.77 43.46 51.83 28.41 35.77 64 I10 Intron 0 7.86 8.59 20.04 12.69 11.75 11.15 6.93 12.61 25.18 9.81 0.00 0.00 3.40 5.71 4.70 3.51 3.34 15.05 2.15 10.42 2.98 2.11 5.95 65 I10_AR1 ActiveIntronRegion 0 7.92 8.64 20.17 12.77 11.83 11.22 6.98 12.70 25.35 9.88 0.00 0.00 3.42 5.75 4.73 3.54 3.37 15.15 2.17 10.49 3.00 2.13 5.99 66 E11_Aa NovelBoundary 0 6.59 12.43 25.43 21.44 12.56 17.89 16.43 12.57 19.30 19.07 0.00 0.00 6.82 2.47 0.00 4.36 9.54 11.52 0.00 12.53 0.00 0.00 8.37 67 ER11a ExonRegion 0 19.25 28.63 107.58 69.01 28.64 70.11 16.72 54.24 85.67 53.91 0.63 9.32 6.31 31.84 40.65 40.71 23.80 69.09 29.63 63.20 45.80 19.05 30.55 68 E11_Da KnownBoundary 0 7.04 17.83 62.00 62.86 8.40 38.44 9.98 39.60 58.80 34.20 2.42 0.00 0.00 10.01 0.00 18.54 8.13 44.77 4.80 34.52 8.40 0.00 3.67 69 E11a_E11b KnownJunction 0 36.67 30.46 64.55 29.17 7.56 21.92 18.90 29.04 59.06 30.65 0.00 5.85 15.10 9.24 23.98 22.90 25.62 25.20 27.95 21.86 26.93 17.76 19.55 70 ER11b ExonRegion 0 8.41 14.48 48.35 34.27 8.88 44.51 11.10 27.72 41.91 19.98 0.38 1.38 3.10 6.26 4.20 7.97 5.37 32.18 8.64 20.51 5.04 1.71 6.58 71 E11_Ab NovelBoundary 0 3.33 8.95 34.77 13.72 4.33 10.79 3.93 15.44 24.77 9.78 0.00 0.00 0.00 2.83 0.00 3.50 0.00 9.53 0.00 8.82 5.50 0.00 3.16 72 E11_Db NovelBoundary 0 11.56 19.80 46.78 30.53 11.12 12.61 9.80 13.80 32.78 20.60 0.00 0.00 0.00 7.12 23.12 20.85 11.41 15.09 0.00 12.66 20.70 0.00 0.00 73 ER11c ExonRegion 0 23.99 29.15 63.11 23.62 9.81 14.67 13.24 20.17 43.64 26.57 0.00 6.49 9.38 16.78 35.30 17.83 30.26 27.41 19.64 26.95 30.85 14.24 8.81 74 ER11d ExonRegion 0 16.19 30.13 80.69 64.56 26.63 51.68 16.19 36.08 77.36 28.01 1.43 15.92 37.10 25.92 39.86 32.05 20.82 44.75 22.44 43.45 30.20 16.10 22.57 75 E11_Dc KnownBoundary 0 16.82 25.72 39.47 38.49 28.35 13.63 27.82 38.40 73.15 25.68 9.95 7.65 8.28 0.00 6.18 13.16 22.72 34.41 18.64 21.86 9.08 0.00 12.12 76 E11c_E12a KnownJunction 1 72.09 123.53 162.27 225.31 76.23 95.12 138.85 145.77 103.79 164.61 9.79 203.47 663.43 21.78 0.00 58.53 34.03 135.18 55.81 88.65 59.31 18.55 46.35 77 E11_Dd KnownBoundary 0 84.90 29.99 97.90 73.18 82.68 49.29 86.82 145.57 104.45 85.56 33.11 38.71 52.59 43.38 62.80 84.93 71.81 74.99 39.44 83.80 23.72 16.90 36.02 78 E11d_E12b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 79 ER11e ExonRegion 0 1.59 8.47 14.91 20.10 26.09 17.12 27.36 13.97 31.29 9.46 1.93 6.49 8.99 9.47 25.63 8.92 7.70 18.17 3.45 27.48 3.12 0.52 6.61 80 ER11f ExonRegion 0 34.48 36.82 20.20 21.23 26.80 25.73 41.23 18.27 26.08 13.06 11.07 13.81 24.81 12.25 30.19 24.80 28.98 27.55 30.49 51.44 16.62 21.34 32.24 81 E11_De NovelBoundary 0 3.33 2.96 19.43 19.41 10.87 12.72 23.27 14.75 18.69 11.87 2.42 0.00 0.00 5.47 15.95 3.76 0.00 7.05 0.00 19.69 9.02 5.45 14.26 82 E11_Df NovelBoundary 0 0.00 0.00 19.96 15.45 60.27 47.87 17.22 16.55 19.33 8.54 0.00 0.00 0.00 7.95 0.00 3.59 13.46 7.17 4.24 15.98 5.13 5.76 4.27 83 ER11g ExonRegion 0 0.00 2.32 0.53 4.48 4.20 0.00 2.55 0.86 2.38 3.11 0.14 0.62 2.35 1.62 2.28 0.00 1.18 2.38 2.05 0.00 0.00 4.76 3.57 84 I11 Intron 0 2.72 6.99 14.87 10.44 28.65 34.58 14.75 13.25 14.20 3.66 0.00 3.06 0.00 6.26 3.15 12.74 4.24 9.84 2.73 4.56 2.83 2.68 8.81 85 I11_SR1 SilentIntronRegion 0 2.73 7.05 14.98 10.53 28.89 34.86 14.87 13.36 14.32 3.68 0.00 3.08 0.00 6.32 3.17 12.85 4.28 9.93 2.75 4.58 2.86 2.70 8.88 86 E12_Aa NovelBoundary 0 1157.46 846.95 454.15 524.24 862.65 548.89 1031.24 413.99 440.27 458.08 321.87 214.72 314.59 215.20 304.84 882.85 609.26 714.95 678.42 753.78 353.30 338.32 663.53 87 E12_Ab NovelBoundary 0 267.01 366.97 904.61 747.86 345.50 281.77 356.00 948.93 778.32 789.39 112.34 27.01 44.15 32.08 79.12 195.85 233.38 809.67 179.21 356.85 194.41 137.04 213.41 88 ER12a ExonRegion 1 8.30 36.92 10.18 5.45 27.37 17.77 18.74 3.46 6.94 1.76 6.54 234.12 633.15 26.74 16.74 26.29 12.19 1.85 18.13 32.24 14.07 10.10 19.20 89 ER12b ExonRegion 0 29.61 89.80 106.32 101.55 57.60 88.52 34.33 53.04 82.57 43.11 1.27 7.77 7.01 15.78 17.26 21.28 10.83 29.12 21.67 41.46 23.42 17.03 18.71 90 E12_Da KnownBoundary 0 23.63 28.42 52.60 47.21 28.10 37.71 17.40 27.48 57.67 38.87 16.90 18.46 19.97 9.48 28.93 55.88 15.52 51.24 38.50 20.52 8.09 11.33 26.38 91 ER12c ExonRegion 0 23.37 39.87 63.83 62.63 58.69 74.85 33.90 48.60 73.49 27.96 5.04 17.05 16.06 18.49 33.05 26.87 18.93 32.70 21.13 43.98 18.72 17.94 24.47