Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 CTSK Gene 0 195.01 45.24 37.02 45.01 128.37 132.72 78.08 108.81 58.41 51.78 6.74 5.98 5.07 7.50 11.55 11.41 16.15 15.74 12.22 19.44 3328.83 3442.90 2104.89 2 271651 Transcript 0 156.85 15.80 12.18 10.84 171.85 189.94 104.62 43.36 23.28 20.54 4.95 1.10 1.19 2.59 4.28 3.67 6.71 8.26 11.09 11.25 4131.45 3924.52 4184.50 3 443913 Transcript 0 0.58 1.48 1.00 3.35 2.43 8.84 1.32 3.61 4.38 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.30 1.51 0.00 1.93 2.20 9.28 0.00 4 368976 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 5 480670 Transcript 0 0.47 1.69 0.54 0.08 0.15 0.00 0.15 0.00 0.07 0.64 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.02 13.35 0.98 6 IG50 Intergenic 0 23.61 29.22 19.21 17.11 34.80 41.71 14.77 18.44 45.46 26.06 7.34 8.89 10.97 7.55 8.58 16.79 27.82 12.98 15.67 27.36 26.30 36.94 23.75 7 IG50_SR1 SilentIntergenicRegion 0 20.33 32.44 10.60 16.09 26.62 25.57 13.42 13.46 27.55 18.44 4.30 6.55 8.54 8.21 7.63 13.66 26.99 11.71 13.89 27.33 21.89 19.98 18.49 8 IG50_AR1 ActiveIntergenicRegion 0 25.76 27.59 24.47 17.88 39.94 51.58 15.69 21.55 56.43 30.78 9.20 10.36 12.49 7.24 9.21 18.78 28.52 13.85 16.84 27.63 29.13 47.26 27.06 9 ER1a ExonRegion 0 262.35 30.41 17.22 20.05 228.58 335.35 148.26 61.49 37.22 28.51 7.10 3.31 3.58 5.64 4.51 11.02 10.95 9.93 15.75 17.10 4343.77 3299.16 3382.64 10 E1a_E3a KnownJunction 0 191.14 12.70 18.04 10.65 272.84 227.65 161.64 65.23 29.80 32.99 7.74 0.00 0.00 2.12 5.44 0.00 9.16 13.72 17.51 14.64 8042.98 8333.63 9122.41 11 I1 Intron 0 7.90 21.57 8.49 9.84 13.66 33.25 12.57 11.47 23.26 10.18 2.78 2.33 4.62 2.40 2.95 3.70 11.24 6.68 4.59 16.02 18.03 14.73 15.96 12 I1_AR1 ActiveIntronRegion 0 7.92 21.62 8.51 9.86 13.70 33.34 12.60 11.50 23.32 10.21 2.79 2.34 4.64 2.41 2.96 3.71 11.27 6.70 4.60 16.06 18.07 14.77 16.00 13 E2_Aa NovelBoundary 0 10.30 18.15 6.98 5.43 16.64 30.44 4.50 8.83 16.44 5.59 0.00 0.00 0.00 2.12 4.45 0.00 0.00 4.68 0.00 15.66 5.37 7.65 8.11 14 E2_Ab NovelBoundary 0 35.56 14.41 7.48 19.71 11.63 40.15 12.63 17.66 14.53 12.06 0.00 6.30 0.00 0.00 5.69 0.00 0.00 6.22 13.84 15.08 18.41 57.62 24.50 15 ER2a ExonRegion 0 0.58 1.48 1.00 3.35 2.43 8.84 1.32 3.61 4.38 3.23 0.00 0.00 0.00 0.00 0.00 0.00 0.30 1.51 0.00 1.93 2.20 9.28 0.00 16 ER2b ExonRegion 0 11.66 14.70 10.03 13.40 15.44 30.96 11.86 11.76 24.58 17.21 2.82 0.00 4.58 3.90 3.93 1.72 5.75 5.25 6.50 24.05 18.79 31.26 19.23 17 E2_Da NovelBoundary 0 17.71 51.64 13.19 19.48 23.60 110.85 20.40 16.22 44.91 20.87 4.42 31.51 20.45 7.30 14.71 7.69 3.65 24.50 15.72 31.70 33.98 43.48 52.84 18 E2a_E3a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.65 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 10.81 48.07 4.35 19 I2 Intron 0 13.02 14.19 6.07 11.47 8.00 28.64 7.70 6.85 18.04 11.07 0.64 2.37 6.19 2.05 6.15 4.44 6.03 5.95 7.41 12.37 19.76 12.81 17.55 20 I2_SR1 SilentIntronRegion 0 11.36 22.74 8.99 7.26 8.38 15.59 11.25 8.07 11.53 14.53 0.86 4.79 5.18 2.99 8.09 1.33 5.91 2.46 8.55 10.47 23.64 14.88 15.77 21 I2_AR2 ActiveIntronRegion 0 14.14 9.22 4.39 14.09 7.86 36.72 5.65 6.19 22.10 9.13 0.52 0.95 6.85 1.51 5.06 6.35 6.17 8.08 6.80 13.63 17.63 11.68 18.80 22 E3_Aa NovelBoundary 0 6.30 6.38 1.74 16.38 16.30 34.30 9.54 14.66 22.51 12.36 2.05 0.00 14.61 0.00 4.45 7.35 4.77 6.30 4.14 2.62 25.39 14.45 26.63 23 ER3a ExonRegion 0 78.96 12.51 16.97 13.73 90.98 93.43 66.74 55.31 42.66 31.97 9.17 7.33 9.14 7.16 4.09 11.96 5.42 20.18 9.64 22.15 4457.03 3351.74 3439.71 24 E3_Ab KnownBoundary 0 50.75 16.05 21.11 20.21 40.92 32.03 26.81 44.89 59.11 31.75 12.53 12.30 6.82 13.54 4.45 25.21 4.77 27.36 9.51 30.94 3132.42 417.55 480.34 25 ER3b ExonRegion 0 35.52 17.66 23.15 19.35 30.12 65.21 23.33 76.22 50.88 43.13 6.36 3.17 8.35 10.93 12.63 16.75 10.83 19.18 8.86 13.10 5190.19 2206.80 1372.77 26 E3_Da NovelBoundary 0 0.00 13.29 2.78 2.06 0.00 43.78 13.51 15.07 23.93 9.97 2.68 0.00 6.01 0.00 0.00 0.00 13.18 8.75 9.04 9.01 47.69 16.59 23.13 27 E3a_E4a KnownJunction 0 91.35 9.74 19.40 33.23 35.14 68.48 49.95 111.52 45.89 59.31 5.16 0.00 0.00 9.89 13.35 10.68 4.39 3.73 18.35 0.00 7706.85 6255.55 3451.32 28 E3a_E5a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.15 8.88 0.00 29 I3 Intron 0 7.26 11.02 5.05 6.97 14.80 32.26 11.86 10.26 17.31 6.62 0.86 0.39 0.43 1.14 2.49 3.62 6.57 4.38 2.47 10.36 9.02 21.21 22.09 30 I3_AR1 ActiveIntronRegion 0 7.93 11.92 5.15 7.89 15.30 34.86 12.51 11.12 19.19 7.12 0.97 0.45 0.48 1.10 2.46 3.92 6.80 4.54 2.07 10.81 9.51 22.67 23.50 31 E4_Aa NovelBoundary 0 25.56 23.88 7.84 15.25 12.39 45.03 19.87 14.54 29.28 14.94 0.00 7.65 0.00 2.47 0.00 4.36 16.08 8.79 8.47 21.41 18.29 48.13 15.62 32 ER4a ExonRegion 0 90.73 22.19 23.08 24.29 133.59 162.61 68.07 93.86 61.48 48.19 8.11 3.98 4.04 5.35 8.99 13.99 14.36 18.09 17.40 19.27 3471.11 4850.18 4339.09 33 E4_Da NovelBoundary 0 0.00 6.31 1.42 5.26 12.99 5.79 6.49 10.72 10.07 3.38 0.00 0.00 0.00 3.00 4.45 0.00 4.77 2.45 8.94 18.22 30.09 11.57 28.68 34 E4a_E5a KnownJunction 0 60.46 31.64 20.58 25.70 240.66 346.96 197.23 85.27 73.03 40.32 5.05 11.85 14.45 2.30 4.45 6.75 3.93 10.65 14.68 8.56 1761.71 1539.96 856.96 35 ER5a ExonRegion 0 228.33 49.34 30.93 40.68 164.18 293.31 151.14 116.80 68.30 58.21 8.07 12.99 5.11 11.09 13.32 17.97 20.95 20.93 12.13 22.53 3988.40 3807.36 2021.16 36 E5a_E6a KnownJunction 0 334.06 37.95 44.76 62.33 105.94 102.84 68.19 154.89 80.64 71.75 17.74 11.85 0.00 12.07 6.18 6.66 25.06 22.76 13.08 22.12 4055.00 4739.84 2616.21 37 ER6a ExonRegion 0 218.29 53.37 43.73 56.26 127.23 161.01 86.62 125.60 80.84 69.23 7.94 13.66 3.09 11.81 8.97 10.83 28.05 15.58 9.92 23.84 4546.97 3921.11 2348.55 38 E6_Da NovelBoundary 0 219.45 58.15 38.88 35.19 116.64 125.38 92.57 82.23 66.32 51.84 12.37 0.00 13.64 7.18 4.45 3.50 20.66 12.60 8.28 12.53 3374.40 2460.12 1772.65 39 E6b_E7a KnownJunction 0 283.31 71.63 56.59 53.47 226.40 215.67 119.90 139.08 76.42 54.72 7.32 5.40 0.00 6.83 14.09 12.73 38.43 15.75 16.94 14.89 5031.40 3359.45 2548.60 40 ER6b ExonRegion 0 238.43 66.19 47.91 43.54 166.16 179.90 102.14 116.76 72.62 56.14 9.95 4.33 8.44 5.28 10.88 10.11 29.54 17.83 14.17 14.15 4748.44 3157.16 2366.49 41 ER6c ExonRegion 0 0.94 3.39 1.09 0.15 0.30 0.00 0.29 0.00 0.14 1.27 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 4.90 17.83 1.96 42 ER7a ExonRegion 0 292.47 62.83 40.05 38.62 123.83 110.99 81.19 117.17 65.14 60.45 3.83 5.42 0.03 8.86 13.98 8.49 20.84 21.05 18.50 19.08 4398.23 3559.53 2359.22 43 E7a_E8a KnownJunction 0 321.69 50.71 43.35 45.72 155.77 86.65 66.02 147.13 48.35 55.74 2.63 5.70 0.00 9.95 14.59 7.09 17.48 9.99 35.11 21.92 4118.76 4109.01 2657.44 44 ER8a ExonRegion 0 282.75 75.99 56.27 53.91 163.70 150.79 98.96 144.24 55.55 67.15 6.16 7.11 3.67 12.92 16.18 11.33 16.19 16.53 18.78 19.53 4279.04 4373.09 2494.51 45 E8_Da NovelBoundary 0 3.78 15.13 5.26 3.93 21.31 2.73 7.91 1.97 15.54 2.85 0.00 0.00 15.10 0.00 0.00 0.00 17.67 0.00 0.00 9.52 22.61 65.89 42.60 46 E8a_E9a KnownJunction 0 342.43 90.05 45.95 44.32 376.66 227.03 117.25 139.53 53.44 44.43 11.79 0.00 0.00 9.83 9.64 12.22 0.00 10.24 17.32 8.25 3863.31 4266.57 2612.11 47 E9_Aa NovelBoundary 0 12.97 9.60 0.00 3.80 36.42 15.56 30.25 8.38 3.21 5.32 2.26 0.00 0.00 0.00 9.64 0.00 17.86 4.97 0.00 3.26 33.48 21.74 11.95 48 ER9a ExonRegion 0 233.67 54.27 50.01 66.36 147.83 93.79 73.03 142.90 64.52 58.95 7.79 5.06 7.22 5.92 15.08 12.90 16.01 16.51 11.51 18.48 2924.41 4049.79 1974.91 49 ER9b ExonRegion 0 17.05 4.29 1.29 1.82 14.12 6.83 3.97 3.36 2.81 0.13 0.00 0.00 0.00 0.00 2.90 0.00 0.00 1.13 0.00 2.01 7.59 140.75 48.45