Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 MCL1 Gene 0 91.38 43.40 77.04 36.76 97.61 87.94 72.08 94.42 144.92 86.54 119.52 126.05 139.91 276.49 182.98 228.34 164.52 110.81 54.69 79.23 423.94 537.48 487.47 2 369026 Transcript 0 135.62 31.62 19.25 17.49 126.31 99.91 61.99 31.80 62.74 36.29 125.13 6.61 4.83 224.78 143.21 286.28 177.85 82.67 17.74 38.35 622.82 589.07 730.99 3 307940 Transcript 0 6.59 8.75 10.64 1.23 7.81 14.03 10.33 15.07 27.29 4.03 15.74 6.30 0.00 5.18 5.56 12.30 16.27 7.67 0.00 3.00 14.52 42.92 54.46 4 439749 Transcript 0 0.00 0.00 14.49 3.26 0.00 2.73 0.00 18.11 48.12 19.74 41.01 0.00 0.00 0.00 0.00 8.29 113.60 14.22 4.42 9.20 226.54 23.82 8.28 5 464132 Transcript 0 73.13 9.99 74.39 21.71 55.66 15.11 27.03 60.87 141.21 23.07 49.31 24.72 24.90 62.78 58.49 77.05 60.22 38.46 37.26 22.54 283.26 136.24 219.20 6 IG44 Intergenic 0 23.94 13.06 13.63 46.39 47.86 9.16 15.38 14.32 21.74 21.96 2.17 6.31 4.58 2.13 5.63 6.30 3.00 8.89 13.23 7.04 5.19 7.57 8.77 7 IG44_SR1 SilentIntergenicRegion 0 25.57 13.98 14.58 49.63 51.08 9.63 16.42 15.32 23.25 23.41 2.28 6.76 4.90 2.16 5.92 6.53 3.13 9.51 14.08 7.48 5.25 7.96 9.18 8 ER1a ExonRegion 0 107.42 32.74 25.03 25.45 150.41 171.20 96.17 53.92 118.06 63.40 244.08 8.02 2.15 431.70 240.00 557.10 347.78 164.24 30.39 66.06 1220.96 1143.13 1405.02 9 E1_Ab KnownBoundary 0 33.78 7.83 45.68 50.68 39.05 54.80 21.11 109.50 219.59 114.03 69.75 46.82 6.82 41.85 63.91 158.42 107.99 269.28 20.14 24.22 343.67 301.39 381.23 10 ER1b ExonRegion 0 8.37 2.56 21.84 11.65 8.48 9.88 7.31 31.98 98.38 49.80 126.75 82.99 32.42 97.30 57.90 69.83 170.36 63.84 17.00 21.99 617.57 161.70 164.61 11 E1_Da KnownBoundary 0 3.78 12.50 60.05 18.21 12.31 10.45 2.12 72.04 186.46 97.80 352.93 52.97 37.17 401.61 141.42 134.67 556.43 67.78 55.25 92.49 1690.23 340.58 359.38 12 E1a_E1c KnownJunction 0 0.00 0.00 14.49 3.26 0.00 2.73 0.00 18.11 48.12 19.74 41.01 0.00 0.00 0.00 0.00 8.29 113.60 14.22 4.42 9.20 226.54 23.82 8.28 13 ER1c ExonRegion 0 13.10 11.18 46.01 14.06 47.23 86.62 46.70 47.34 100.26 82.99 140.66 41.86 36.71 463.76 258.28 326.57 199.63 117.97 34.29 56.58 596.72 671.07 749.63 14 E1_Ac KnownBoundary 0 32.45 79.53 60.61 20.71 38.71 156.39 98.44 61.20 115.88 91.63 146.09 60.02 39.77 470.01 313.12 210.37 188.78 131.61 29.18 66.67 643.53 500.34 443.80 15 ER1d ExonRegion 0 96.93 52.25 155.61 57.71 113.60 154.20 95.52 176.80 294.98 206.50 285.04 131.41 226.88 743.78 487.56 461.22 375.95 311.17 116.32 231.68 1102.78 1038.36 1015.59 16 E1_Db NovelBoundary 0 58.97 12.83 96.98 23.47 41.34 25.16 27.07 57.30 164.12 20.36 27.01 18.76 6.33 82.64 72.93 71.35 50.40 60.07 34.92 18.28 254.96 116.89 219.72 17 E1b_E2b KnownJunction 1 161.36 107.88 189.08 86.70 258.23 301.02 237.15 217.20 335.41 261.82 368.04 178.26 518.80 1019.96 692.88 778.17 545.11 396.50 156.80 342.15 1321.17 1654.59 1594.50 18 E1b_E3a KnownJunction 0 6.59 8.75 10.64 1.23 7.81 14.03 10.33 15.07 27.29 4.03 15.74 6.30 0.00 5.18 5.56 12.30 16.27 7.67 0.00 3.00 14.52 42.92 54.46 19 I1 Intron 0 11.62 0.00 0.00 0.00 20.99 5.76 5.15 0.00 0.00 0.00 13.59 11.19 19.41 41.68 26.38 34.93 31.08 2.90 5.00 11.69 100.01 57.12 75.90 20 I1_AR1 ActiveIntronRegion 0 11.99 0.00 0.00 0.00 21.58 5.94 5.32 0.00 0.00 0.00 13.99 11.55 20.03 42.92 27.22 35.85 31.80 2.99 5.16 12.02 102.73 58.60 77.94 21 E2_Aa NovelBoundary 0 52.82 6.51 83.23 17.68 52.29 16.35 19.21 61.90 167.62 24.18 38.11 29.26 57.79 75.70 53.03 70.84 34.69 38.01 13.84 26.33 292.02 105.93 194.88 22 ER2a ExonRegion 0 73.13 9.99 74.39 21.71 55.66 15.11 27.03 60.87 141.21 23.07 49.31 24.72 24.90 62.78 58.49 77.05 60.22 38.46 37.26 22.54 283.26 136.24 219.20 23 E2_Ab KnownBoundary 0 119.21 14.14 117.77 36.79 104.50 17.94 62.14 92.25 156.60 26.51 79.76 71.42 26.78 97.36 79.98 108.95 108.27 42.37 30.31 19.94 359.98 132.69 274.61 24 ER2b ExonRegion 0 247.71 161.23 308.79 151.18 404.14 338.34 261.46 435.47 668.92 400.22 576.92 722.74 743.95 1318.09 796.25 1192.73 826.41 554.80 290.10 393.68 2056.29 2872.23 2374.07 25 E2_Da NovelBoundary 0 141.14 19.01 21.79 19.84 65.45 26.97 40.06 58.33 84.98 22.83 44.96 51.62 34.74 51.62 32.39 41.53 69.94 34.90 56.28 5.88 308.64 169.49 313.20 26 E2a_E3a KnownJunction 0 255.23 157.14 257.56 117.73 306.62 337.82 271.69 386.22 477.11 330.51 402.26 836.82 684.37 855.38 618.83 817.99 643.20 390.33 202.26 232.02 1547.34 2461.46 1494.03 27 I2 Intron 0 110.41 22.43 31.76 15.29 114.14 23.48 50.22 63.01 101.46 25.04 32.18 72.34 58.23 40.78 33.18 33.39 46.34 10.39 20.27 15.87 118.99 196.16 180.34 28 I2_AR1 ActiveIntronRegion 0 110.71 22.49 31.85 15.34 114.45 23.55 50.35 63.18 101.73 25.11 32.27 72.53 58.39 40.89 33.27 33.48 46.47 10.42 20.32 15.92 119.31 196.67 180.81 29 E3_Aa NovelBoundary 0 183.00 12.43 44.41 25.04 195.84 54.51 101.93 90.45 165.33 42.63 55.59 129.64 83.92 53.98 50.19 35.97 64.80 28.31 27.48 20.84 266.20 169.68 218.87 30 ER3a ExonRegion 0 301.24 175.76 275.22 165.09 412.84 363.91 319.99 377.95 549.05 327.96 425.92 626.94 694.02 966.91 649.07 846.95 575.15 375.52 218.39 288.37 1194.74 2049.30 1748.70 31 E3_Da KnownBoundary 0 170.18 127.87 43.61 30.30 285.48 284.21 259.01 47.28 49.25 15.74 46.06 177.81 272.87 21.66 27.81 126.04 20.01 68.44 34.54 21.16 39.04 103.67 340.00 32 ER3b ExonRegion 0 291.59 167.14 3.56 3.19 150.57 180.97 203.07 4.80 4.45 2.54 0.00 18.20 30.34 1.54 1.81 9.50 0.00 10.44 1.85 2.69 7.20 6.12 31.05 33 E3_Db KnownBoundary 0 366.95 79.79 14.58 10.72 75.38 5.74 3.49 8.83 11.11 7.49 30.64 5.25 23.86 9.01 29.79 16.49 31.32 4.06 18.07 8.95 8.53 60.80 71.02 34 ER3c ExonRegion 0 37.38 7.88 17.22 6.19 16.28 7.53 6.94 13.67 11.49 8.09 2.44 5.39 3.65 4.22 13.51 4.13 4.75 2.06 1.23 2.68 10.43 19.99 14.30 35 ER3d ExonRegion 1 163.82 30.50 13.48 9.54 102.21 28.61 27.80 9.68 7.41 9.18 6.19 5.20 7.50 17.87 46.42 15.46 7.92 1.11 5.10 10.64 24.68 35.00 56.97 36 IG43 Intergenic 0 56.63 10.00 9.14 15.04 36.76 9.22 26.33 14.40 18.42 8.33 2.00 11.03 8.25 1.82 21.14 11.01 10.67 8.27 10.80 9.17 22.75 19.92 68.63 37 IG43_SR4 SilentIntergenicRegion 0 15.43 6.78 6.89 3.24 6.13 7.95 7.12 5.04 2.11 1.77 0.00 3.43 0.00 1.29 15.11 5.57 8.53 3.00 11.02 3.72 13.41 13.54 19.21 38 IG43_AR4 ActiveIntergenicRegion 0 34.36 11.30 9.66 12.15 30.30 23.89 26.01 13.32 6.94 4.52 0.45 14.01 2.76 2.10 26.03 16.43 15.63 5.54 17.89 4.88 22.36 20.04 37.40 39 IG43_SR3 SilentIntergenicRegion 0 19.63 4.86 9.58 14.10 19.89 7.03 18.65 10.57 10.55 3.71 2.08 17.13 4.08 1.00 16.69 9.55 11.36 4.60 11.74 4.07 10.43 21.95 54.30 40 IG43_AR2 ActiveIntergenicRegion 0 62.79 11.73 12.05 20.60 47.40 11.47 36.98 16.82 25.96 10.45 2.42 16.16 14.69 2.07 28.72 15.90 14.92 12.39 11.74 13.61 32.31 22.58 87.95 41 IG43_SR2 SilentIntergenicRegion 0 10.88 10.82 2.28 4.63 13.59 1.58 8.66 6.84 3.26 2.52 0.00 4.59 9.00 0.00 6.67 9.63 10.23 2.25 0.00 2.81 27.41 9.21 42.29 42 IG43_AR1 ActiveIntergenicRegion 0 26.54 3.79 7.09 9.83 16.20 2.97 11.70 10.74 14.82 3.44 0.00 5.85 8.24 0.00 15.76 10.20 4.82 3.60 0.00 10.01 19.60 13.40 38.89 43 IG43_SR1 SilentIntergenicRegion 0 64.89 10.18 7.65 12.75 36.08 8.41 22.91 14.36 16.76 8.60 1.96 7.15 5.35 1.97 18.11 8.30 8.00 7.04 10.68 7.91 19.37 18.75 63.65