Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 SNX27 Gene 0 58.91 115.92 83.25 92.48 83.26 106.69 95.10 100.61 103.16 104.77 35.75 35.56 63.35 37.64 62.37 45.44 41.15 92.02 93.14 90.91 57.27 63.42 84.46 2 368841 Transcript 0 0.00 0.00 0.00 0.00 0.00 1.45 1.02 1.13 0.82 2.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.09 0.00 0.00 2.18 3 458013 Transcript 0 6.82 36.90 30.69 22.14 38.96 22.09 35.42 52.82 74.97 79.73 23.27 42.46 65.90 41.14 15.20 11.96 15.71 78.06 71.53 89.10 43.06 68.40 54.38 4 368843 Transcript 0 1.63 1.56 1.79 2.62 2.26 1.69 2.34 7.58 3.90 1.15 0.15 0.67 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.65 0.00 1.12 0.00 5 368838 Transcript 0 0.06 1.79 0.37 0.74 0.32 0.44 1.56 2.15 5.17 4.41 3.16 0.39 4.41 0.94 1.49 2.43 0.70 2.18 3.76 2.32 3.81 0.63 2.31 6 482791 Transcript 0 5.13 5.85 3.69 8.86 0.93 1.71 12.93 5.90 4.21 6.09 0.00 2.88 5.00 0.46 1.91 3.78 1.13 1.99 2.94 6.13 0.00 1.20 1.02 7 ER1a ExonRegion 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 1.42 0.00 0.00 0.00 8 ER1b ExonRegion 0 0.36 1.39 3.17 1.70 2.66 8.48 3.83 2.19 5.20 5.21 7.81 2.97 1.46 6.68 11.58 4.47 9.78 9.31 10.80 15.73 14.36 1.99 11.01 9 E1_Da KnownBoundary 0 0.00 0.00 12.24 13.95 3.40 2.78 5.92 12.12 16.98 19.23 8.95 5.85 6.82 19.95 18.67 19.05 22.81 59.94 47.34 54.90 46.77 5.51 31.76 10 E1a_E2b KnownJunction 0 0.00 0.00 0.00 0.00 0.00 2.90 2.03 2.26 1.65 5.35 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 8.76 0.00 0.00 4.35 11 ER1c ExonRegion 0 1.00 6.15 8.42 10.64 2.04 6.65 11.59 11.94 24.59 22.07 10.65 6.74 5.98 26.43 27.35 16.24 20.03 45.59 31.20 39.45 32.15 12.28 25.65 12 E1b_E2b KnownJunction 0 3.04 9.27 16.44 10.19 20.80 18.74 18.64 13.92 39.38 30.43 19.22 12.00 0.00 29.55 51.55 35.80 35.62 49.21 39.34 64.81 44.42 22.35 27.40 13 I1_SR2 SilentIntronRegion 0 5.13 5.93 5.43 7.82 8.05 4.42 17.41 5.57 5.36 5.46 2.53 7.92 15.21 0.49 3.16 3.47 4.97 3.21 4.23 9.57 2.86 0.88 4.15 14 I1_AR3 ActiveIntronRegion 0 3.96 4.63 4.86 11.40 4.77 1.99 11.71 6.41 3.56 3.08 1.02 11.42 22.46 1.39 4.94 3.40 6.07 0.71 2.97 6.34 1.74 0.18 5.42 15 I1_AR7 ActiveIntronRegion 0 6.03 10.79 5.79 11.22 12.78 5.54 20.40 6.14 3.07 2.27 1.39 4.57 12.41 0.62 2.93 1.91 7.23 2.78 0.74 7.77 1.97 1.36 2.15 16 ER2a ExonRegion 0 0.06 1.79 0.37 0.74 0.32 0.44 1.56 2.15 5.17 4.41 3.16 0.39 4.41 0.94 1.49 2.43 0.70 2.18 3.76 2.32 3.81 0.63 2.31 17 E2_Ab KnownBoundary 0 0.00 3.29 0.00 2.06 3.65 0.00 2.25 2.46 8.33 5.69 5.37 0.00 6.82 0.00 0.00 3.85 0.00 4.23 4.80 0.00 3.15 2.82 3.93 18 ER2b ExonRegion 0 7.08 29.07 24.11 20.54 18.24 26.29 34.96 34.50 66.01 59.43 29.04 21.29 38.37 35.44 38.31 35.27 40.68 86.22 58.96 88.62 60.23 29.48 59.17 19 E2a_E3a KnownJunction 0 9.56 15.59 35.04 24.51 31.07 27.14 40.54 42.59 79.77 77.07 37.69 12.60 62.17 26.78 20.40 35.12 44.32 111.47 53.93 108.47 65.92 38.27 66.24 20 ER3a ExonRegion 0 13.38 42.46 28.90 29.74 34.15 40.36 61.80 47.29 87.92 79.60 28.44 34.43 62.53 47.10 33.66 37.24 58.10 98.60 56.94 95.72 69.58 36.06 98.25 21 E3a_E4a KnownJunction 0 17.86 42.16 24.60 41.49 43.04 51.56 97.73 57.42 105.47 92.16 43.85 75.77 118.01 60.27 31.65 41.53 61.43 102.76 83.01 152.76 51.28 53.52 138.54 22 ER4a ExonRegion 1 16.96 41.49 31.12 38.45 28.20 49.20 75.22 61.21 100.73 91.28 30.96 81.99 98.06 46.87 29.73 60.36 72.52 86.59 61.06 117.35 60.25 49.78 134.72 23 E4a_E5a KnownJunction 1 22.67 45.58 46.10 47.15 35.14 34.13 64.96 75.12 96.70 82.63 32.75 120.94 89.93 34.79 44.38 51.44 59.47 63.38 42.92 91.02 82.47 30.80 126.08 24 ER5a ExonRegion 0 16.85 50.40 36.51 38.92 42.64 55.71 68.34 61.55 103.12 80.02 33.13 60.39 107.40 47.57 41.17 42.21 62.42 80.55 68.14 106.73 56.24 45.39 92.56 25 E5a_E6a KnownJunction 1 24.15 92.94 26.58 42.12 55.69 53.55 102.19 74.55 100.72 108.50 51.86 107.89 136.03 73.99 23.86 49.99 52.08 72.34 73.98 157.88 86.55 65.58 147.93 26 ER5b ExonRegion 0 19.46 70.16 23.61 39.31 45.59 42.74 83.26 65.08 97.19 95.19 49.36 82.76 126.63 59.97 30.13 45.61 55.35 72.92 85.39 143.29 74.25 60.66 140.51 27 ER6a ExonRegion 1 21.27 67.31 29.22 38.23 55.55 45.71 95.22 73.47 100.36 102.97 43.82 85.55 124.61 54.71 36.76 67.95 53.11 61.05 80.48 133.37 63.21 56.28 113.15 28 E6a_E7a KnownJunction 1 9.71 64.99 31.13 42.29 57.81 56.05 79.85 81.37 127.08 98.91 46.96 112.09 85.87 43.73 52.66 48.11 51.05 44.40 86.40 86.99 45.65 64.30 87.41 29 E7_Aa NovelBoundary 0 28.52 17.50 12.00 20.61 11.71 2.61 7.82 13.64 5.70 10.26 0.00 6.30 6.98 0.00 4.45 4.36 0.00 7.09 0.00 14.25 0.00 0.00 4.27 30 ER7a ExonRegion 1 29.54 65.82 38.47 47.49 58.56 77.75 93.60 88.55 121.70 105.11 42.90 82.74 124.23 52.56 45.80 57.21 64.11 80.51 96.55 141.42 54.31 65.63 96.35 31 E7a_E8a KnownJunction 0 0.00 0.00 2.96 2.06 0.00 0.00 13.25 2.55 0.00 2.50 0.00 0.00 0.00 0.00 0.00 6.66 0.00 0.00 0.00 0.00 0.00 0.00 0.00 32 E7a_E9a KnownJunction 0 10.82 40.78 59.16 39.89 42.19 55.42 91.11 99.44 123.73 106.94 38.96 58.97 96.91 35.91 77.76 38.79 60.50 75.82 93.65 117.42 59.18 67.91 76.06 33 ER8a ExonRegion 0 10.26 11.70 4.42 15.65 1.85 3.42 12.62 9.25 8.43 9.69 0.00 5.76 10.00 0.93 3.82 0.90 2.26 3.99 5.88 12.27 0.00 2.40 2.03 34 E8_Da NovelBoundary 1 17.41 31.44 0.00 21.14 4.24 11.41 55.20 9.36 9.90 13.48 0.00 0.00 41.56 0.00 0.00 0.00 0.00 6.59 3.86 26.59 0.00 6.25 0.00 35 ER9a ExonRegion 0 22.93 67.85 39.06 52.88 59.61 69.75 91.41 96.04 106.80 103.81 56.74 47.48 92.65 52.22 37.14 51.98 68.44 88.16 89.01 137.19 58.15 53.75 78.90 36 E9a_E10a KnownJunction 0 30.15 99.46 32.85 64.43 75.38 92.28 133.24 98.58 117.13 108.63 55.33 37.81 118.82 37.67 26.21 64.85 72.09 84.77 61.18 120.74 84.08 59.09 91.85 37 ER10a ExonRegion 0 21.31 69.33 35.72 48.85 51.75 80.36 87.28 99.75 111.52 96.44 35.77 53.25 115.06 49.57 39.24 58.04 53.39 130.60 82.10 126.82 87.30 52.71 82.28 38 E10a_E11a KnownJunction 1 16.00 90.97 18.30 39.16 27.33 92.79 88.46 103.84 97.22 81.77 20.37 68.12 67.37 58.98 43.76 68.27 40.58 119.84 73.70 100.54 91.18 46.66 95.52 39 ER11a ExonRegion 0 14.67 68.27 27.99 34.47 42.25 74.60 84.22 70.28 107.36 89.86 37.59 45.71 89.22 53.97 25.84 72.16 42.09 144.90 98.92 91.93 79.40 51.46 106.17 40 E11a_E12a KnownJunction 0 6.52 78.21 26.88 35.56 44.65 92.56 93.14 80.30 110.68 96.86 38.01 56.42 106.16 57.80 40.18 73.66 63.39 119.01 82.07 101.63 98.72 49.05 101.41 41 ER12a ExonRegion 0 8.57 71.68 30.57 33.66 51.60 80.56 94.86 69.57 99.98 104.60 48.35 39.33 70.35 53.16 43.86 64.79 37.25 131.04 110.21 114.61 66.52 67.44 109.83 42 E12_Da NovelBoundary 0 12.45 38.74 15.20 34.46 21.31 39.81 44.43 22.92 22.77 20.98 10.37 13.20 0.00 7.36 4.45 15.64 4.77 21.68 0.00 15.21 10.93 11.02 18.52 43 E12a_E13a KnownJunction 0 3.78 21.44 8.37 15.92 16.47 37.42 27.47 17.37 32.35 33.34 4.74 18.31 6.33 12.89 13.35 4.02 17.20 51.53 42.07 43.59 15.01 32.82 22.88 44 E12a_E13b KnownJunction 0 6.82 36.90 30.69 22.14 38.96 22.09 35.42 52.82 74.97 79.73 23.27 42.46 65.90 41.14 15.20 11.96 15.71 78.06 71.53 89.10 43.06 68.40 54.38 45 I12 Intron 0 4.95 11.42 5.98 9.50 16.28 14.59 19.82 3.62 7.75 6.40 3.62 3.34 3.61 5.77 4.23 5.56 3.09 10.75 10.43 4.98 2.06 6.82 12.37 46 I12_AR1 ActiveIntronRegion 0 3.31 12.05 7.01 9.78 20.24 16.27 16.29 3.01 6.37 5.73 1.54 6.88 0.00 6.37 2.38 2.82 0.00 11.28 9.15 3.11 0.23 7.16 9.34 47 I12_AR2 ActiveIntronRegion 0 6.00 11.20 5.52 9.54 14.22 13.85 22.25 4.05 8.72 6.93 4.93 1.29 5.88 5.50 5.41 7.28 5.03 10.67 11.36 6.16 3.19 6.75 14.33 48 E13_Aa NovelBoundary 0 13.85 27.69 9.22 17.08 28.27 30.27 26.32 11.25 27.72 17.30 15.06 6.30 0.00 0.00 0.00 3.59 4.77 19.03 4.42 16.87 2.66 8.02 24.07 49 ER13a ExonRegion 0 4.47 26.66 7.08 17.72 19.62 29.54 30.16 23.62 32.94 35.68 10.09 12.99 13.03 16.42 9.03 5.61 25.67 51.53 53.09 43.74 18.85 41.67 24.15 50 ER13b ExonRegion 0 19.30 51.39 22.42 35.93 38.88 56.37 68.48 55.66 50.44 57.26 20.16 14.92 35.03 18.25 17.19 18.23 21.13 36.62 41.14 55.50 28.21 31.81 38.89 51 E13_Ab KnownBoundary 1 3.78 29.60 13.96 36.39 72.33 30.72 71.23 55.24 49.25 56.38 9.90 28.81 93.83 21.07 15.20 7.09 26.18 27.32 35.48 70.31 26.63 24.86 40.21 52 ER13c ExonRegion 0 85.25 160.02 119.39 129.85 114.20 143.92 118.69 131.57 127.71 131.87 42.66 39.58 70.54 42.58 84.50 54.50 46.01 111.36 118.32 102.15 66.54 81.86 101.31 53 ER13d ExonRegion 0 21.69 19.83 6.43 20.44 20.07 19.71 16.88 27.66 13.28 11.47 1.93 8.66 2.35 0.81 10.88 0.00 3.30 1.85 0.00 3.72 0.00 10.94 0.73 54 ER13e ExonRegion 0 1.63 1.56 1.79 2.62 2.26 1.69 2.34 7.58 3.90 1.15 0.15 0.67 0.00 0.00 1.12 0.00 0.00 0.00 0.00 0.65 0.00 1.12 0.00 55 IG25 Intergenic 0 12.97 64.10 57.72 67.17 108.08 141.89 50.51 101.04 123.12 38.55 0.23 0.74 0.92 0.70 0.88 0.53 0.79 15.60 26.27 47.10 0.72 0.06 1.93 56 IG25_AR1 ActiveIntergenicRegion 0 2.06 12.99 6.47 9.06 13.99 11.40 7.07 20.39 27.94 9.50 0.35 0.39 1.05 0.66 1.49 0.42 2.10 7.74 8.21 11.48 1.80 0.00 1.59 57 IG25_SR1 SilentIntergenicRegion 0 4.91 3.23 4.69 5.22 8.70 10.86 4.76 15.41 14.12 4.98 0.00 0.00 0.00 0.00 0.90 0.59 0.00 2.74 7.83 9.72 1.94 0.00 3.75 58 IG25_AR2 ActiveIntergenicRegion 0 19.85 98.97 91.78 105.99 170.84 228.16 79.47 154.89 187.57 58.26 0.19 1.01 0.96 0.80 0.54 0.59 0.16 21.37 38.24 70.84 0.00 0.10 1.91