Order SeqName SeqType IsAE NBL01_MYCN NBL05_MYCN NBL09_MYCN NBL10_MYCN NBL02 NBL03 NBL04 NBL06 NBL07 NBL08 NBL11_Rel2 NBL11_Rem1 NBL11_Rel1 NBL12_Rel_Left NBL12_Rel_Right NBL13_Rel_Left NBL13_Rel_Right NBL14_MYCN_Met NBL14_MYCN_Pri NBL15_MYCN_Rel1 SKP01 SKP02 SKP03 1 ZNF687 Gene 0 24.16 25.00 70.27 39.05 29.03 47.41 28.12 52.62 41.15 66.41 89.98 37.72 39.28 110.08 113.63 106.80 93.96 100.78 78.23 67.66 58.70 35.94 42.69 2 443959 Transcript 0 1.97 2.28 3.31 0.11 0.00 2.13 2.51 3.72 0.41 4.89 9.28 0.59 0.43 2.74 4.21 5.13 5.04 9.03 15.13 5.59 1.89 0.69 1.63 3 336715 Transcript 0 0.05 0.55 0.00 0.00 1.03 2.25 1.96 0.00 0.00 0.00 0.44 0.00 3.52 6.50 3.69 1.49 4.05 1.39 7.53 2.37 0.60 1.89 2.34 4 449313 Transcript 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5 324048 Transcript 0 7.45 8.75 14.73 11.21 23.40 9.50 14.66 10.22 8.45 20.42 6.85 10.74 12.21 11.02 18.58 16.37 12.78 21.68 28.65 34.62 4.14 2.79 7.53 6 368879 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 7 426871 Transcript 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 8 459919 Transcript 0 2.61 3.63 3.18 1.72 1.90 6.17 3.09 5.49 5.29 3.42 13.80 11.41 1.10 18.50 13.72 15.39 20.48 6.75 10.36 4.30 6.03 0.66 9.69 9 436614 Transcript 0 0.91 0.63 3.88 2.01 0.51 0.87 0.47 1.60 1.15 2.51 0.92 0.31 0.34 5.22 3.18 5.80 2.75 2.82 1.14 2.58 1.57 0.79 4.96 10 ER1a ExonRegion 0 0.39 1.21 3.86 0.22 0.00 4.25 3.03 3.57 0.82 4.99 4.30 1.18 0.85 5.48 3.97 2.82 5.59 8.44 9.27 7.92 0.69 1.38 3.26 11 E1a_E4a KnownJunction 0 3.56 3.35 2.75 0.00 0.00 0.00 1.99 3.86 0.00 4.78 14.27 0.00 0.00 0.00 4.45 7.43 4.49 9.62 20.99 3.26 3.09 0.00 0.00 12 E2_Ab NovelBoundary 0 2.82 0.00 3.34 1.96 0.00 9.60 5.92 0.00 1.22 3.14 7.95 0.00 12.99 39.26 14.83 8.12 19.54 6.84 54.78 12.02 2.35 0.00 7.26 13 ER2a ExonRegion 0 0.10 1.11 0.00 0.00 2.07 2.67 3.91 0.00 0.00 0.00 0.88 0.00 7.04 9.74 7.39 0.00 4.80 2.77 15.06 4.74 1.20 3.79 1.74 14 E2_Ac KnownBoundary 0 0.00 12.89 0.00 0.00 8.57 10.90 8.35 0.00 1.79 2.63 7.32 0.00 0.00 2.41 13.72 3.33 0.00 0.00 4.52 11.31 2.41 12.00 3.93 15 E2_Ad KnownBoundary 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.30 1.59 1.53 0.00 0.00 0.00 2.94 0.00 0.00 0.00 0.00 0.00 0.00 0.00 5.51 6.83 16 ER2b ExonRegion 0 2.12 4.07 0.00 0.00 5.35 7.49 9.27 0.00 0.00 0.00 1.93 0.00 9.38 17.80 23.21 0.00 6.74 3.70 19.11 8.51 2.20 11.37 2.94 17 ER2c ExonRegion 0 2.12 4.07 0.41 0.00 6.24 9.17 11.03 0.00 0.00 0.00 1.93 0.00 4.69 16.24 28.05 0.00 9.90 3.70 19.11 8.51 2.20 13.20 2.94 18 ER2d ExonRegion 0 3.76 6.53 3.05 0.99 7.83 9.01 5.73 2.31 4.94 2.77 13.26 2.76 4.40 9.44 16.79 16.76 17.91 5.91 23.69 3.14 8.13 8.62 3.30 19 E2a_E3a KnownJunction 0 0.00 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 2.47 0.00 0.00 0.00 2.24 9.60 0.00 0.00 0.00 0.00 20 E2a_E4a KnownJunction 0 3.78 15.85 4.49 2.06 0.00 5.68 1.85 6.94 8.01 2.50 10.00 6.00 14.28 4.83 4.45 25.81 3.83 14.63 22.12 2.49 13.34 8.02 7.26 21 E3_Aa NovelBoundary 0 10.15 15.72 13.75 8.19 4.24 31.23 24.02 14.75 10.50 12.25 16.95 36.16 34.09 9.30 26.95 16.41 13.18 10.78 13.46 17.51 2.84 5.51 12.98 22 ER3a ExonRegion 0 16.19 17.11 19.31 12.53 19.08 17.36 29.99 17.31 12.13 24.74 13.08 20.67 23.00 23.18 32.76 30.06 25.80 34.77 38.41 52.27 12.41 8.36 22.58 23 E3_Da NovelBoundary 0 7.26 3.35 8.37 5.09 8.66 2.90 12.94 11.25 1.48 20.87 2.58 6.30 12.99 4.94 4.45 4.19 12.90 0.00 0.00 5.62 11.43 0.00 12.29 24 E3a_E4a KnownJunction 0 6.15 9.14 24.90 19.28 51.10 11.13 14.00 13.35 13.22 36.53 7.48 11.55 13.64 7.42 22.99 19.05 12.53 28.02 37.93 51.58 0.00 0.00 0.00 25 E4_Aa NovelBoundary 0 13.63 8.68 16.74 7.76 4.33 17.83 10.25 18.57 7.99 10.80 4.90 0.00 13.15 7.42 0.00 19.23 4.77 9.58 8.75 11.44 2.97 2.82 11.61 26 ER4a ExonRegion 0 14.10 27.12 67.04 36.70 27.16 51.57 32.16 49.01 52.86 84.89 114.62 35.62 39.41 116.84 94.08 123.90 113.23 122.97 106.57 94.59 64.22 50.86 51.09 27 E4_Da KnownBoundary 1 22.45 12.23 88.47 45.45 22.58 46.22 26.41 53.81 54.98 128.40 155.93 38.26 25.97 181.65 99.39 120.99 144.37 179.33 110.87 95.24 87.04 43.72 41.49 28 ER4b ExonRegion 0 18.20 22.73 67.10 40.69 33.07 55.55 30.72 58.73 51.43 76.80 119.04 49.08 39.15 149.39 130.63 146.43 131.95 137.91 113.77 86.43 89.67 45.70 59.48 29 E4_Ab KnownBoundary 0 38.90 47.56 84.77 77.28 61.12 58.66 30.34 53.48 56.89 108.44 118.61 72.32 46.91 130.03 157.36 161.15 170.27 142.19 75.01 113.01 104.84 60.44 46.52 30 ER4c ExonRegion 0 27.79 24.95 76.83 39.38 31.40 54.25 28.69 55.48 59.62 90.68 133.89 50.26 48.96 152.31 171.73 133.22 141.00 150.97 86.46 99.08 90.25 50.18 49.10 31 E4_Ac KnownBoundary 0 55.34 26.38 84.98 58.77 24.19 75.47 24.33 72.08 71.61 103.04 91.55 42.76 96.42 135.03 184.44 177.90 103.60 125.98 94.59 91.40 63.88 42.37 78.36 32 ER4d ExonRegion 0 32.33 22.94 77.45 36.20 28.76 57.66 31.33 55.75 46.46 88.82 103.88 49.17 87.39 162.13 218.40 141.75 140.99 126.91 86.88 95.19 83.51 47.79 62.83 33 E4b_E5a KnownJunction 1 86.24 50.65 78.26 45.28 60.44 124.59 73.40 54.55 51.76 83.70 166.99 83.58 216.87 236.80 279.25 207.55 155.40 188.74 129.51 124.83 117.13 66.99 72.05 34 E5_Aa NovelBoundary 0 13.93 5.85 1.57 1.43 0.00 0.00 1.72 2.26 3.21 10.15 2.00 0.00 0.00 2.24 0.00 7.69 9.54 3.23 0.00 2.68 8.59 2.39 4.18 35 ER5a ExonRegion 0 32.87 38.26 123.15 53.66 41.06 79.53 37.33 88.12 63.32 105.08 165.12 95.64 128.31 214.49 230.33 210.24 161.41 176.80 128.07 102.12 94.72 53.18 73.84 36 E5a_E6a KnownJunction 1 19.71 33.02 121.37 60.07 43.63 91.59 58.82 82.07 76.65 120.13 183.68 44.11 152.91 147.92 163.30 142.18 154.00 190.40 136.29 81.49 118.67 51.56 76.83 37 E5a_E6b NovelJunction 0 13.85 3.09 3.61 4.36 4.07 2.16 0.00 2.22 6.28 11.28 11.37 5.85 0.00 2.12 0.00 4.36 8.23 15.84 0.00 8.95 11.12 0.00 0.00 38 E5a_E7a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 39 ER6a ExonRegion 0 37.06 28.91 149.57 74.90 43.48 71.45 42.02 114.09 65.87 129.30 193.64 108.19 144.23 238.22 223.58 224.74 185.63 221.96 187.50 104.90 116.71 63.62 69.93 40 E6_Da KnownBoundary 0 3.63 0.00 4.49 1.53 12.73 16.13 3.75 1.93 3.21 2.77 7.32 12.60 0.00 34.26 4.45 0.00 7.39 4.44 8.66 2.88 2.35 0.00 4.35 41 E6a_E6b KnownJunction 1 38.45 22.56 164.13 108.44 56.54 81.71 43.24 104.00 51.48 96.27 149.77 50.27 129.05 129.20 143.40 148.76 146.61 163.41 142.97 114.73 111.08 40.78 60.95 42 ER6b ExonRegion 0 2.61 3.63 3.18 1.72 1.90 6.17 3.09 5.49 5.29 3.42 13.80 11.41 1.10 18.50 13.72 15.39 20.48 6.75 10.36 4.30 6.03 0.66 9.69 43 E6_Ab KnownBoundary 0 13.11 5.72 4.82 1.90 3.74 7.78 8.17 13.10 5.38 6.50 8.90 32.26 0.00 26.08 18.54 11.71 30.11 13.31 13.84 6.52 2.47 0.00 0.00 44 ER6c ExonRegion 0 36.05 36.09 121.43 73.86 53.33 110.86 41.35 86.11 61.22 101.99 167.74 95.01 89.78 199.58 178.80 186.10 168.37 163.06 146.92 101.31 113.94 60.97 58.37 45 E6c_E7a KnownJunction 0 27.34 49.40 132.43 72.55 46.60 123.11 62.62 67.73 59.20 113.55 167.25 86.73 79.05 196.13 168.12 163.12 161.01 100.07 138.73 95.62 112.99 18.61 61.72 46 ER6d ExonRegion 0 42.33 52.87 123.76 70.87 50.84 150.37 59.58 72.60 69.17 111.25 179.76 108.24 70.35 193.27 188.58 169.41 178.25 140.43 156.08 93.62 130.02 37.50 76.35 47 ER7a ExonRegion 0 20.01 31.93 81.17 45.62 35.76 59.80 30.40 58.77 42.67 75.90 108.79 48.95 38.80 146.07 136.82 131.98 107.10 107.69 94.37 61.38 69.28 34.36 43.74 48 E7a_E8a KnownJunction 0 42.16 50.25 135.48 90.10 80.05 89.61 56.44 94.02 62.96 112.04 124.77 18.91 46.59 120.14 134.62 176.71 113.98 171.04 101.56 96.13 66.41 50.95 55.66 49 ER8a ExonRegion 0 33.83 42.02 119.72 77.25 30.48 76.16 34.25 78.45 55.89 104.87 129.80 37.39 33.74 153.99 159.95 189.01 125.49 172.15 118.08 87.99 67.20 45.30 64.89 50 E8_Da NovelBoundary 0 3.63 0.00 6.18 3.63 22.24 0.00 2.12 2.55 2.75 0.00 9.37 0.00 0.00 7.18 4.45 16.15 4.77 7.96 8.38 3.07 13.04 0.00 8.37 51 E8a_E9a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 52 E8a_E9b KnownJunction 0 58.75 47.36 123.56 108.34 59.68 96.65 51.18 87.61 54.08 101.54 103.97 53.87 33.11 186.53 172.45 250.19 110.33 174.27 134.22 85.71 99.21 54.74 81.69 53 ER9a ExonRegion 0 3.76 0.95 4.49 1.52 2.68 2.69 1.11 1.20 1.95 3.96 3.15 0.49 0.30 8.12 5.66 4.03 3.78 7.09 3.29 3.19 13.65 0.74 2.98 54 E9_Ab KnownBoundary 0 3.78 0.00 1.33 0.00 0.00 4.88 2.08 0.00 1.48 4.65 2.26 0.00 0.00 0.00 4.45 0.00 3.83 5.14 4.80 0.00 11.98 0.00 4.01 55 E9_Ac KnownBoundary 0 42.08 56.90 97.36 78.94 50.00 60.14 24.82 52.57 41.03 69.28 73.12 24.01 13.15 109.07 108.04 169.96 115.66 101.39 92.33 52.16 65.36 45.93 35.51 56 ER9b ExonRegion 0 48.35 43.67 114.99 94.33 44.78 80.88 39.86 74.96 54.02 95.43 116.69 36.91 21.48 163.78 165.52 206.02 123.18 166.10 126.58 73.46 95.46 54.94 68.62 57 ER9c ExonRegion 0 32.51 28.87 91.05 55.92 32.50 50.47 26.25 69.24 48.22 77.70 88.58 20.44 19.68 125.55 133.03 133.26 95.48 122.75 72.90 70.67 76.93 41.60 41.76 58 E9a_E10a KnownJunction 0 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 0.00 59 E9a_E10b KnownJunction 0 33.86 30.39 92.52 66.79 29.71 49.29 26.94 69.37 48.38 80.56 46.85 18.61 6.82 98.59 123.86 188.24 88.36 123.53 60.61 81.05 70.24 29.94 58.90 60 E10_Ab NovelBoundary 0 3.41 3.16 4.85 5.86 0.00 0.00 0.00 4.97 5.18 4.24 0.00 0.00 0.00 7.42 0.00 4.36 0.00 2.45 9.22 6.20 0.00 0.00 16.30 61 ER10a ExonRegion 0 1.81 1.26 7.76 4.02 1.02 1.75 0.95 3.21 2.29 5.02 1.84 0.62 0.67 10.44 6.36 11.61 5.50 5.63 2.28 5.17 3.15 1.59 9.93 62 ER10b ExonRegion 0 49.05 46.63 141.65 76.43 43.07 76.97 36.09 102.09 69.92 98.77 127.93 31.81 26.55 151.16 175.25 153.25 121.91 129.31 86.17 75.24 78.46 57.33 62.23 63 E10_Da KnownBoundary 0 25.34 88.60 332.96 194.38 150.42 195.34 114.82 213.71 103.85 213.04 258.01 61.67 68.99 209.08 225.35 179.53 191.21 139.99 91.58 126.04 92.11 98.16 50.45 64 ER10c ExonRegion 0 36.88 30.24 80.93 49.91 39.51 42.87 28.90 58.04 34.45 55.84 66.30 25.77 31.26 74.46 78.27 67.36 56.33 55.17 53.24 38.86 30.96 30.44 31.80 65 ER10d ExonRegion 0 3.44 0.00 0.00 1.36 12.38 12.38 3.64 1.30 0.00 2.15 4.83 0.00 0.00 7.51 8.70 15.60 6.19 0.00 5.97 0.00 2.75 3.13 8.44 66 ER10e ExonRegion 0 0.00 0.00 0.00 0.00 2.68 3.67 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.25 0.00 2.97 3.30 0.00 0.00 0.00 0.00 2.08 2.94 67 ER10f ExonRegion 0 0.00 0.00 0.00 0.00 0.00 1.83 0.00 0.00 0.00 0.00 0.00 0.00 0.00 3.25 0.00 2.97 3.30 0.00 0.00 0.00 0.00 0.00 2.94